data_1UH5 # _model_server_result.job_id v-AsAAyowQzxoJz2-OY57Q _model_server_result.datetime_utc '2024-12-28 12:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1UH5 # _exptl.entry_id 1UH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UH5 _cell.length_a 133.016 _cell.length_b 133.016 _cell.length_c 83.659 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.016 133.016 41.8295 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1UH5 _atom_sites.fract_transf_matrix[1][1] 0.007518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TCL A 1 502 502 TCL TCL . D 3 NAD A 1 501 501 NAD NAD . E 2 TCL B 1 602 602 TCL TCL . F 3 NAD B 1 601 601 NAD NAD . G 4 HOH A 1 503 2 HOH HOH . G 4 HOH A 2 504 4 HOH HOH . G 4 HOH A 3 505 8 HOH HOH . G 4 HOH A 4 506 9 HOH HOH . G 4 HOH A 5 507 11 HOH HOH . G 4 HOH A 6 508 12 HOH HOH . G 4 HOH A 7 509 13 HOH HOH . G 4 HOH A 8 510 14 HOH HOH . G 4 HOH A 9 511 16 HOH HOH . G 4 HOH A 10 512 18 HOH HOH . G 4 HOH A 11 513 19 HOH HOH . G 4 HOH A 12 514 20 HOH HOH . G 4 HOH A 13 515 21 HOH HOH . G 4 HOH A 14 516 22 HOH HOH . G 4 HOH A 15 517 26 HOH HOH . G 4 HOH A 16 518 31 HOH HOH . G 4 HOH A 17 519 34 HOH HOH . G 4 HOH A 18 520 37 HOH HOH . G 4 HOH A 19 521 38 HOH HOH . G 4 HOH A 20 522 39 HOH HOH . G 4 HOH A 21 523 43 HOH HOH . G 4 HOH A 22 524 44 HOH HOH . G 4 HOH A 23 525 46 HOH HOH . G 4 HOH A 24 526 47 HOH HOH . G 4 HOH A 25 527 49 HOH HOH . G 4 HOH A 26 528 51 HOH HOH . G 4 HOH A 27 529 52 HOH HOH . G 4 HOH A 28 530 55 HOH HOH . G 4 HOH A 29 531 61 HOH HOH . G 4 HOH A 30 532 63 HOH HOH . G 4 HOH A 31 533 65 HOH HOH . G 4 HOH A 32 534 66 HOH HOH . G 4 HOH A 33 535 69 HOH HOH . G 4 HOH A 34 536 71 HOH HOH . G 4 HOH A 35 537 74 HOH HOH . G 4 HOH A 36 538 76 HOH HOH . G 4 HOH A 37 539 77 HOH HOH . G 4 HOH A 38 540 78 HOH HOH . G 4 HOH A 39 541 80 HOH HOH . G 4 HOH A 40 542 81 HOH HOH . G 4 HOH A 41 543 83 HOH HOH . G 4 HOH A 42 544 92 HOH HOH . G 4 HOH A 43 545 93 HOH HOH . G 4 HOH A 44 546 94 HOH HOH . G 4 HOH A 45 547 96 HOH HOH . G 4 HOH A 46 548 97 HOH HOH . G 4 HOH A 47 549 99 HOH HOH . G 4 HOH A 48 550 100 HOH HOH . G 4 HOH A 49 551 102 HOH HOH . G 4 HOH A 50 552 105 HOH HOH . G 4 HOH A 51 553 106 HOH HOH . G 4 HOH A 52 554 107 HOH HOH . G 4 HOH A 53 555 108 HOH HOH . G 4 HOH A 54 556 110 HOH HOH . G 4 HOH A 55 557 111 HOH HOH . G 4 HOH A 56 558 115 HOH HOH . G 4 HOH A 57 559 119 HOH HOH . G 4 HOH A 58 560 123 HOH HOH . G 4 HOH A 59 561 124 HOH HOH . G 4 HOH A 60 562 125 HOH HOH . G 4 HOH A 61 563 126 HOH HOH . G 4 HOH A 62 564 127 HOH HOH . G 4 HOH A 63 565 128 HOH HOH . G 4 HOH A 64 566 129 HOH HOH . G 4 HOH A 65 567 131 HOH HOH . G 4 HOH A 66 568 132 HOH HOH . G 4 HOH A 67 569 138 HOH HOH . G 4 HOH A 68 570 141 HOH HOH . G 4 HOH A 69 571 142 HOH HOH . G 4 HOH A 70 572 143 HOH HOH . G 4 HOH A 71 573 144 HOH HOH . G 4 HOH A 72 574 148 HOH HOH . G 4 HOH A 73 575 152 HOH HOH . G 4 HOH A 74 576 153 HOH HOH . G 4 HOH A 75 577 154 HOH HOH . G 4 HOH A 76 578 155 HOH HOH . G 4 HOH A 77 579 157 HOH HOH . H 4 HOH B 1 603 1 HOH HOH . H 4 HOH B 2 604 3 HOH HOH . H 4 HOH B 3 605 5 HOH HOH . H 4 HOH B 4 606 6 HOH HOH . H 4 HOH B 5 607 7 HOH HOH . H 4 HOH B 6 608 10 HOH HOH . H 4 HOH B 7 609 15 HOH HOH . H 4 HOH B 8 610 17 HOH HOH . H 4 HOH B 9 611 23 HOH HOH . H 4 HOH B 10 612 24 HOH HOH . H 4 HOH B 11 613 25 HOH HOH . H 4 HOH B 12 614 27 HOH HOH . H 4 HOH B 13 615 28 HOH HOH . H 4 HOH B 14 616 29 HOH HOH . H 4 HOH B 15 617 30 HOH HOH . H 4 HOH B 16 618 32 HOH HOH . H 4 HOH B 17 619 33 HOH HOH . H 4 HOH B 18 620 35 HOH HOH . H 4 HOH B 19 621 36 HOH HOH . H 4 HOH B 20 622 40 HOH HOH . H 4 HOH B 21 623 41 HOH HOH . H 4 HOH B 22 624 42 HOH HOH . H 4 HOH B 23 625 45 HOH HOH . H 4 HOH B 24 626 48 HOH HOH . H 4 HOH B 25 627 50 HOH HOH . H 4 HOH B 26 628 53 HOH HOH . H 4 HOH B 27 629 54 HOH HOH . H 4 HOH B 28 630 56 HOH HOH . H 4 HOH B 29 631 57 HOH HOH . H 4 HOH B 30 632 58 HOH HOH . H 4 HOH B 31 633 59 HOH HOH . H 4 HOH B 32 634 60 HOH HOH . H 4 HOH B 33 635 62 HOH HOH . H 4 HOH B 34 636 64 HOH HOH . H 4 HOH B 35 637 67 HOH HOH . H 4 HOH B 36 638 68 HOH HOH . H 4 HOH B 37 639 70 HOH HOH . H 4 HOH B 38 640 72 HOH HOH . H 4 HOH B 39 641 73 HOH HOH . H 4 HOH B 40 642 75 HOH HOH . H 4 HOH B 41 643 79 HOH HOH . H 4 HOH B 42 644 82 HOH HOH . H 4 HOH B 43 645 84 HOH HOH . H 4 HOH B 44 646 85 HOH HOH . H 4 HOH B 45 647 86 HOH HOH . H 4 HOH B 46 648 87 HOH HOH . H 4 HOH B 47 649 88 HOH HOH . H 4 HOH B 48 650 89 HOH HOH . H 4 HOH B 49 651 90 HOH HOH . H 4 HOH B 50 652 91 HOH HOH . H 4 HOH B 51 653 95 HOH HOH . H 4 HOH B 52 654 98 HOH HOH . H 4 HOH B 53 655 101 HOH HOH . H 4 HOH B 54 656 103 HOH HOH . H 4 HOH B 55 657 109 HOH HOH . H 4 HOH B 56 658 112 HOH HOH . H 4 HOH B 57 659 113 HOH HOH . H 4 HOH B 58 660 114 HOH HOH . H 4 HOH B 59 661 117 HOH HOH . H 4 HOH B 60 662 118 HOH HOH . H 4 HOH B 61 663 120 HOH HOH . H 4 HOH B 62 664 121 HOH HOH . H 4 HOH B 63 665 130 HOH HOH . H 4 HOH B 64 666 133 HOH HOH . H 4 HOH B 65 667 134 HOH HOH . H 4 HOH B 66 668 136 HOH HOH . H 4 HOH B 67 669 137 HOH HOH . H 4 HOH B 68 670 139 HOH HOH . H 4 HOH B 69 671 140 HOH HOH . H 4 HOH B 70 672 145 HOH HOH . H 4 HOH B 71 673 146 HOH HOH . H 4 HOH B 72 674 147 HOH HOH . H 4 HOH B 73 675 149 HOH HOH . H 4 HOH B 74 676 150 HOH HOH . H 4 HOH B 75 677 151 HOH HOH . H 4 HOH B 76 678 156 HOH HOH . H 4 HOH B 77 679 158 HOH HOH . H 4 HOH B 78 680 159 HOH HOH . H 4 HOH B 79 681 160 HOH HOH . H 4 HOH B 80 682 161 HOH HOH . H 4 HOH B 81 683 162 HOH HOH . H 4 HOH B 82 684 163 HOH HOH . H 4 HOH B 83 685 164 HOH HOH . H 4 HOH B 84 686 165 HOH HOH . H 4 HOH B 85 687 166 HOH HOH . H 4 HOH B 86 688 167 HOH HOH . H 4 HOH B 87 689 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 51.701 89.22 40.78 1 53.53 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . D 3 52.874 89.363 39.89 1 60.42 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . D 3 51.078 90.164 41.747 1 62.56 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . D 3 50.694 88.11 40.199 1 61.34 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . D 3 51.021 87.236 39.056 1 53.98 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . D 3 51.301 85.871 39.617 1 54.21 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . D 3 51.603 84.981 38.471 1 49.8 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . D 3 52.573 85.736 40.542 1 53.44 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . D 3 52.177 85.318 41.886 1 60.13 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . D 3 53.482 84.743 39.831 1 52.76 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . D 3 54.324 83.968 40.612 1 47.43 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . D 3 52.435 83.977 39.006 1 50.2 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . D 3 53.014 83.254 37.881 1 49.04 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . D 3 53.947 83.591 36.895 1 50.32 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . D 3 54.194 82.603 36.038 1 49.64 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . D 3 53.435 81.554 36.411 1 43.51 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . D 3 53.263 80.188 35.875 1 41.37 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . D 3 53.919 79.755 34.814 1 38.5 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . D 3 52.356 79.394 36.576 1 39.53 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . D 3 51.658 79.773 37.663 1 39 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . D 3 51.782 81.058 38.216 1 44.96 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . D 3 52.684 81.923 37.559 1 44.44 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . D 3 50.969 90.172 39.694 1 54.92 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . D 3 49.638 91.156 39.641 1 44.09 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . D 3 50.111 92.509 39.342 1 51.81 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . D 3 48.832 90.891 40.883 1 44.34 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . D 3 48.889 90.623 38.328 1 51.6 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . D 3 48.262 89.307 38.303 1 43.94 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . D 3 47.286 89.285 37.187 1 45.46 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . D 3 46.487 90.546 37.215 1 42.51 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . D 3 47.92 89.287 35.763 1 41.76 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . D 3 47.062 88.565 34.854 1 36.3 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . D 3 47.993 90.789 35.402 1 39.81 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . D 3 48.198 90.969 34.029 1 37.89 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . D 3 46.6 91.256 35.952 1 43.68 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . D 3 46.344 92.707 36.292 1 48.25 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . D 3 47.315 93.477 37.066 1 47.62 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . D 3 47.537 94.808 36.916 1 46.16 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . D 3 48.55 95.561 37.801 1 47.27 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . D 3 48.492 96.813 37.833 1 46.07 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . D 3 49.468 94.885 38.515 1 47.01 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . D 3 46.805 95.646 35.863 1 39.23 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . D 3 45.851 94.842 35.011 1 38.11 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . D 3 45.663 93.447 35.242 1 42.01 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #