data_1UHO # _model_server_result.job_id oR5vKKNHWNpsSwkIifq-wg _model_server_result.datetime_utc '2024-11-26 06:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 1UHO # _exptl.entry_id 1UHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.603 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UHO _cell.length_a 60.523 _cell.length_b 156.721 _cell.length_c 89.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 617 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A NE2 HIS 117 A HIS 653 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 A OD2 ASP 118 A ASP 654 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 A OD1 ASP 118 A ASP 654 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc5 A OD2 ASP 228 A ASP 764 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 C MG MG . A MG 1002 1_555 E O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc7 C MG MG . A MG 1002 1_555 E O HOH . A HOH 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? # _chem_comp.formula 'C23 H32 N6 O4 S' _chem_comp.formula_weight 488.603 _chem_comp.id VDN _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VARDENAFIL, LEVITRA' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 VDN sing 376 n n C1 H11 VDN sing 377 n n C1 H12 VDN sing 378 n n C1 H13 VDN sing 379 n n C2 O3 VDN sing 380 n n C2 H21 VDN sing 381 n n C2 H22 VDN sing 382 n n O3 C4 VDN sing 383 n n C4 C5 VDN doub 384 n y C4 C9 VDN sing 385 n y C5 C6 VDN sing 386 n y C5 H5 VDN sing 387 n n C6 C7 VDN doub 388 n y C6 H6 VDN sing 389 n n C7 C8 VDN sing 390 n y C7 S10 VDN sing 391 n n C8 C9 VDN doub 392 n y C8 H8 VDN sing 393 n n C9 C21 VDN sing 394 n y S10 O11 VDN doub 395 n n S10 O12 VDN doub 396 n n S10 N14 VDN sing 397 n n C13 C20 VDN sing 398 n n C13 H131 VDN sing 399 n n C13 H132 VDN sing 400 n n C13 H133 VDN sing 401 n n N14 C15 VDN sing 402 n n N14 C19 VDN sing 403 n n C15 C16 VDN sing 404 n n C15 H151 VDN sing 405 n n C15 H152 VDN sing 406 n n C16 N17 VDN sing 407 n n C16 H161 VDN sing 408 n n C16 H162 VDN sing 409 n n N17 C18 VDN sing 410 n n N17 C20 VDN sing 411 n n C18 C19 VDN sing 412 n n C18 H181 VDN sing 413 n n C18 H182 VDN sing 414 n n C19 H191 VDN sing 415 n n C19 H192 VDN sing 416 n n C20 H201 VDN sing 417 n n C20 H202 VDN sing 418 n n C21 N22 VDN doub 419 n y C21 N26 VDN sing 420 n y N22 C23 VDN sing 421 n y C23 C24 VDN sing 422 n y C23 O27 VDN doub 423 n n C24 N25 VDN sing 424 n y C24 C28 VDN doub 425 n y N25 N26 VDN sing 426 n y N25 C30 VDN sing 427 n y N26 H26 VDN sing 428 n n C28 N29 VDN sing 429 n y C28 C31 VDN sing 430 n n N29 C30 VDN doub 431 n y C30 C32 VDN sing 432 n n C31 H311 VDN sing 433 n n C31 H312 VDN sing 434 n n C31 H313 VDN sing 435 n n C32 C33 VDN sing 436 n n C32 H321 VDN sing 437 n n C32 H322 VDN sing 438 n n C33 C34 VDN sing 439 n n C33 H331 VDN sing 440 n n C33 H332 VDN sing 441 n n C34 H341 VDN sing 442 n n C34 H342 VDN sing 443 n n C34 H343 VDN sing 444 n n # _atom_sites.entry_id 1UHO _atom_sites.fract_transf_matrix[1][1] 0.016523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1001 ZN ZN2 . C 3 MG A 1 1002 1002 MG MG2 . D 4 VDN A 1 1000 1000 VDN VAR . E 5 HOH A 1 2001 2001 HOH WAT . E 5 HOH A 2 2002 2002 HOH WAT . E 5 HOH A 3 2003 2003 HOH WAT . E 5 HOH A 4 2004 2004 HOH WAT . E 5 HOH A 5 2005 2005 HOH WAT . E 5 HOH A 6 2006 2006 HOH WAT . E 5 HOH A 7 2007 2007 HOH WAT . E 5 HOH A 8 2008 2008 HOH WAT . E 5 HOH A 9 2009 2009 HOH WAT . E 5 HOH A 10 2010 2010 HOH WAT . E 5 HOH A 11 2011 2011 HOH WAT . E 5 HOH A 12 2012 2012 HOH WAT . E 5 HOH A 13 2013 2013 HOH WAT . E 5 HOH A 14 2014 2014 HOH WAT . E 5 HOH A 15 2015 2015 HOH WAT . E 5 HOH A 16 2016 2016 HOH WAT . E 5 HOH A 17 2017 2017 HOH WAT . E 5 HOH A 18 2018 2018 HOH WAT . E 5 HOH A 19 2019 2019 HOH WAT . E 5 HOH A 20 2020 2020 HOH WAT . E 5 HOH A 21 2021 2021 HOH WAT . E 5 HOH A 22 2022 2022 HOH WAT . E 5 HOH A 23 2024 2024 HOH WAT . E 5 HOH A 24 2025 2025 HOH WAT . E 5 HOH A 25 2026 2026 HOH WAT . E 5 HOH A 26 2027 2027 HOH WAT . E 5 HOH A 27 2028 2028 HOH WAT . E 5 HOH A 28 2029 2029 HOH WAT . E 5 HOH A 29 2030 2030 HOH WAT . E 5 HOH A 30 2031 2031 HOH WAT . E 5 HOH A 31 2032 2032 HOH WAT . E 5 HOH A 32 2033 2033 HOH WAT . E 5 HOH A 33 2034 2034 HOH WAT . E 5 HOH A 34 2035 2035 HOH WAT . E 5 HOH A 35 2036 2036 HOH WAT . E 5 HOH A 36 2037 2037 HOH WAT . E 5 HOH A 37 2039 2039 HOH WAT . E 5 HOH A 38 2040 2040 HOH WAT . E 5 HOH A 39 2041 2041 HOH WAT . E 5 HOH A 40 2042 2042 HOH WAT . E 5 HOH A 41 2043 2043 HOH WAT . E 5 HOH A 42 2044 2044 HOH WAT . E 5 HOH A 43 2045 2045 HOH WAT . E 5 HOH A 44 2046 2046 HOH WAT . E 5 HOH A 45 2047 2047 HOH WAT . E 5 HOH A 46 2048 2048 HOH WAT . E 5 HOH A 47 2049 2049 HOH WAT . E 5 HOH A 48 2050 2050 HOH WAT . E 5 HOH A 49 2051 2051 HOH WAT . E 5 HOH A 50 2053 2053 HOH WAT . E 5 HOH A 51 2054 2054 HOH WAT . E 5 HOH A 52 2055 2055 HOH WAT . E 5 HOH A 53 2056 2056 HOH WAT . E 5 HOH A 54 2057 2057 HOH WAT . E 5 HOH A 55 2058 2058 HOH WAT . E 5 HOH A 56 2059 2059 HOH WAT . E 5 HOH A 57 2060 2060 HOH WAT . E 5 HOH A 58 2061 2061 HOH WAT . E 5 HOH A 59 2062 2062 HOH WAT . E 5 HOH A 60 2063 2063 HOH WAT . E 5 HOH A 61 2064 2064 HOH WAT . E 5 HOH A 62 2066 2066 HOH WAT . E 5 HOH A 63 2067 2067 HOH WAT . E 5 HOH A 64 2068 2068 HOH WAT . E 5 HOH A 65 2069 2069 HOH WAT . E 5 HOH A 66 2070 2070 HOH WAT . E 5 HOH A 67 2071 2071 HOH WAT . E 5 HOH A 68 2072 2072 HOH WAT . E 5 HOH A 69 2073 2073 HOH WAT . E 5 HOH A 70 2074 2074 HOH WAT . E 5 HOH A 71 2075 2075 HOH WAT . E 5 HOH A 72 2076 2076 HOH WAT . E 5 HOH A 73 2077 2077 HOH WAT . E 5 HOH A 74 2078 2078 HOH WAT . E 5 HOH A 75 2079 2079 HOH WAT . E 5 HOH A 76 2080 2080 HOH WAT . E 5 HOH A 77 2081 2081 HOH WAT . E 5 HOH A 78 2082 2082 HOH WAT . E 5 HOH A 79 2083 2083 HOH WAT . E 5 HOH A 80 2084 2084 HOH WAT . E 5 HOH A 81 2085 2085 HOH WAT . E 5 HOH A 82 2086 2086 HOH WAT . E 5 HOH A 83 2087 2087 HOH WAT . E 5 HOH A 84 2088 2088 HOH WAT . E 5 HOH A 85 2089 2089 HOH WAT . E 5 HOH A 86 2090 2090 HOH WAT . E 5 HOH A 87 2091 2091 HOH WAT . E 5 HOH A 88 2092 2092 HOH WAT . E 5 HOH A 89 2093 2093 HOH WAT . E 5 HOH A 90 2094 2094 HOH WAT . E 5 HOH A 91 2095 2095 HOH WAT . E 5 HOH A 92 2096 2096 HOH WAT . E 5 HOH A 93 2097 2097 HOH WAT . E 5 HOH A 94 2098 2098 HOH WAT . E 5 HOH A 95 2099 2099 HOH WAT . E 5 HOH A 96 2100 2100 HOH WAT . E 5 HOH A 97 2101 2101 HOH WAT . E 5 HOH A 98 2102 2102 HOH WAT . E 5 HOH A 99 2103 2103 HOH WAT . E 5 HOH A 100 2104 2104 HOH WAT . E 5 HOH A 101 2105 2105 HOH WAT . E 5 HOH A 102 2106 2106 HOH WAT . E 5 HOH A 103 2107 2107 HOH WAT . E 5 HOH A 104 2108 2108 HOH WAT . E 5 HOH A 105 2109 2109 HOH WAT . E 5 HOH A 106 2110 2110 HOH WAT . E 5 HOH A 107 2111 2111 HOH WAT . E 5 HOH A 108 2112 2112 HOH WAT . E 5 HOH A 109 2113 2113 HOH WAT . E 5 HOH A 110 2114 2114 HOH WAT . E 5 HOH A 111 2115 2115 HOH WAT . E 5 HOH A 112 2117 2117 HOH WAT . E 5 HOH A 113 2119 2119 HOH WAT . E 5 HOH A 114 2120 2120 HOH WAT . E 5 HOH A 115 2121 2121 HOH WAT . E 5 HOH A 116 2122 2122 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VDN . . . D 4 5.649 65.412 87.021 1 24.51 ? C1 VDN 1000 A 1 HETATM 2 C C2 VDN . . . D 4 5.743 66.607 86.066 1 28.7 ? C2 VDN 1000 A 1 HETATM 3 O O3 VDN . . . D 4 4.448 66.652 85.451 1 30.41 ? O3 VDN 1000 A 1 HETATM 4 C C4 VDN . . . D 4 4.008 67.563 84.512 1 31.03 ? C4 VDN 1000 A 1 HETATM 5 C C5 VDN . . . D 4 4.736 68.613 83.976 1 33.24 ? C5 VDN 1000 A 1 HETATM 6 C C6 VDN . . . D 4 4.148 69.523 82.977 1 33.63 ? C6 VDN 1000 A 1 HETATM 7 C C7 VDN . . . D 4 2.847 69.329 82.555 1 35.04 ? C7 VDN 1000 A 1 HETATM 8 C C8 VDN . . . D 4 2.044 68.207 83.113 1 32.18 ? C8 VDN 1000 A 1 HETATM 9 C C9 VDN . . . D 4 2.548 67.357 84.027 1 31.73 ? C9 VDN 1000 A 1 HETATM 10 S S10 VDN . . . D 4 2.096 70.361 81.367 1 37.5 ? S10 VDN 1000 A 1 HETATM 11 O O11 VDN . . . D 4 2.7 70.039 80.092 1 36.87 ? O11 VDN 1000 A 1 HETATM 12 O O12 VDN . . . D 4 0.674 70.087 81.44 1 39.34 ? O12 VDN 1000 A 1 HETATM 13 C C13 VDN . . . D 4 2.476 77.196 80.332 1 40.68 ? C13 VDN 1000 A 1 HETATM 14 N N14 VDN . . . D 4 2.396 71.942 81.781 1 36.71 ? N14 VDN 1000 A 1 HETATM 15 C C15 VDN . . . D 4 1.175 72.726 82.109 1 37.76 ? C15 VDN 1000 A 1 HETATM 16 C C16 VDN . . . D 4 1.482 74.208 82.424 1 38.58 ? C16 VDN 1000 A 1 HETATM 17 N N17 VDN . . . D 4 2.19 74.844 81.289 1 39.66 ? N17 VDN 1000 A 1 HETATM 18 C C18 VDN . . . D 4 3.439 74.092 81.01 1 39.29 ? C18 VDN 1000 A 1 HETATM 19 C C19 VDN . . . D 4 3.172 72.602 80.707 1 37.02 ? C19 VDN 1000 A 1 HETATM 20 C C20 VDN . . . D 4 2.446 76.265 81.569 1 41.96 ? C20 VDN 1000 A 1 HETATM 21 C C21 VDN . . . D 4 1.702 66.271 84.553 1 32 ? C21 VDN 1000 A 1 HETATM 22 N N22 VDN . . . D 4 1.597 66.025 85.891 1 32.07 ? N22 VDN 1000 A 1 HETATM 23 C C23 VDN . . . D 4 0.815 65.023 86.515 1 31.67 ? C23 VDN 1000 A 1 HETATM 24 C C24 VDN . . . D 4 0.057 64.195 85.542 1 32.56 ? C24 VDN 1000 A 1 HETATM 25 N N25 VDN . . . D 4 0.217 64.508 84.151 1 32.25 ? N25 VDN 1000 A 1 HETATM 26 N N26 VDN . . . D 4 0.997 65.498 83.691 1 30.62 ? N26 VDN 1000 A 1 HETATM 27 O O27 VDN . . . D 4 0.789 64.885 87.721 1 33.32 ? O27 VDN 1000 A 1 HETATM 28 C C28 VDN . . . D 4 -0.835 63.129 85.464 1 33.26 ? C28 VDN 1000 A 1 HETATM 29 N N29 VDN . . . D 4 -1.203 62.803 84.11 1 34.15 ? N29 VDN 1000 A 1 HETATM 30 C C30 VDN . . . D 4 -0.545 63.662 83.402 1 33.65 ? C30 VDN 1000 A 1 HETATM 31 C C31 VDN . . . D 4 -1.383 62.372 86.669 1 30.7 ? C31 VDN 1000 A 1 HETATM 32 C C32 VDN . . . D 4 -0.544 63.806 81.886 1 34.68 ? C32 VDN 1000 A 1 HETATM 33 C C33 VDN . . . D 4 0.581 63.056 81.129 1 34.54 ? C33 VDN 1000 A 1 HETATM 34 C C34 VDN . . . D 4 0.2 61.591 80.911 1 35.95 ? C34 VDN 1000 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 34 #