data_1UIN # _model_server_result.job_id dgJH6h-Vcx9CNJUGSBnjdg _model_server_result.datetime_utc '2024-12-12 04:36:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":513}' # _entry.id 1UIN # _exptl.entry_id 1UIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UIN _cell.length_a 113.207 _cell.length_b 113.207 _cell.length_c 150.346 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,C,D,E,H 2 1,2 B,F,G,I 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_654 -y+1,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 113.207 0 -50.115333 4 'crystal symmetry operation' 5_565 x-y,-y+1,-z+1/3 1 0 0 0 -1 0 0 0 -1 -56.6035 98.040138 50.115333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 61 A LYS 61 1_555 E C4A PLP . A PLP 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 B NZ LYS 61 B LYS 61 1_555 G C4A PLP . B PLP 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1UIN _atom_sites.fract_transf_matrix[1][1] 0.008833 _atom_sites.fract_transf_matrix[1][2] 0.0051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1002 2 SO4 SO4 . D 2 SO4 A 1 1003 3 SO4 SO4 . E 3 PLP A 1 513 513 PLP PLP . F 2 SO4 B 1 1001 1 SO4 SO4 . G 3 PLP B 1 1513 1513 PLP PLP . H 4 HOH A 1 1004 1 HOH HOH . H 4 HOH A 2 1005 3 HOH HOH . H 4 HOH A 3 1006 4 HOH HOH . H 4 HOH A 4 1007 5 HOH HOH . H 4 HOH A 5 1008 6 HOH HOH . H 4 HOH A 6 1009 7 HOH HOH . H 4 HOH A 7 1010 8 HOH HOH . H 4 HOH A 8 1011 11 HOH HOH . H 4 HOH A 9 1012 12 HOH HOH . H 4 HOH A 10 1013 14 HOH HOH . H 4 HOH A 11 1014 20 HOH HOH . H 4 HOH A 12 1015 21 HOH HOH . H 4 HOH A 13 1016 23 HOH HOH . H 4 HOH A 14 1017 25 HOH HOH . H 4 HOH A 15 1018 27 HOH HOH . H 4 HOH A 16 1019 28 HOH HOH . H 4 HOH A 17 1020 29 HOH HOH . H 4 HOH A 18 1021 30 HOH HOH . H 4 HOH A 19 1022 31 HOH HOH . H 4 HOH A 20 1023 34 HOH HOH . H 4 HOH A 21 1024 35 HOH HOH . H 4 HOH A 22 1025 36 HOH HOH . H 4 HOH A 23 1026 37 HOH HOH . H 4 HOH A 24 1027 38 HOH HOH . H 4 HOH A 25 1028 39 HOH HOH . H 4 HOH A 26 1029 40 HOH HOH . H 4 HOH A 27 1030 41 HOH HOH . H 4 HOH A 28 1031 42 HOH HOH . H 4 HOH A 29 1032 43 HOH HOH . H 4 HOH A 30 1033 44 HOH HOH . H 4 HOH A 31 1034 46 HOH HOH . H 4 HOH A 32 1035 48 HOH HOH . H 4 HOH A 33 1036 53 HOH HOH . H 4 HOH A 34 1037 54 HOH HOH . H 4 HOH A 35 1038 55 HOH HOH . H 4 HOH A 36 1039 56 HOH HOH . H 4 HOH A 37 1040 57 HOH HOH . H 4 HOH A 38 1041 61 HOH HOH . H 4 HOH A 39 1042 62 HOH HOH . H 4 HOH A 40 1043 63 HOH HOH . H 4 HOH A 41 1044 64 HOH HOH . H 4 HOH A 42 1045 65 HOH HOH . H 4 HOH A 43 1046 66 HOH HOH . H 4 HOH A 44 1047 68 HOH HOH . H 4 HOH A 45 1048 71 HOH HOH . H 4 HOH A 46 1049 72 HOH HOH . H 4 HOH A 47 1050 73 HOH HOH . H 4 HOH A 48 1051 74 HOH HOH . H 4 HOH A 49 1052 77 HOH HOH . H 4 HOH A 50 1053 78 HOH HOH . H 4 HOH A 51 1054 80 HOH HOH . H 4 HOH A 52 1055 83 HOH HOH . H 4 HOH A 53 1056 84 HOH HOH . H 4 HOH A 54 1057 86 HOH HOH . H 4 HOH A 55 1058 88 HOH HOH . H 4 HOH A 56 1059 91 HOH HOH . H 4 HOH A 57 1060 92 HOH HOH . H 4 HOH A 58 1061 94 HOH HOH . H 4 HOH A 59 1062 96 HOH HOH . H 4 HOH A 60 1063 97 HOH HOH . H 4 HOH A 61 1064 99 HOH HOH . H 4 HOH A 62 1065 100 HOH HOH . H 4 HOH A 63 1066 104 HOH HOH . H 4 HOH A 64 1067 107 HOH HOH . H 4 HOH A 65 1068 108 HOH HOH . H 4 HOH A 66 1069 110 HOH HOH . H 4 HOH A 67 1070 113 HOH HOH . H 4 HOH A 68 1071 114 HOH HOH . H 4 HOH A 69 1072 118 HOH HOH . H 4 HOH A 70 1073 120 HOH HOH . H 4 HOH A 71 1074 122 HOH HOH . H 4 HOH A 72 1075 124 HOH HOH . H 4 HOH A 73 1076 125 HOH HOH . H 4 HOH A 74 1077 127 HOH HOH . H 4 HOH A 75 1078 132 HOH HOH . H 4 HOH A 76 1079 135 HOH HOH . H 4 HOH A 77 1080 136 HOH HOH . H 4 HOH A 78 1081 137 HOH HOH . H 4 HOH A 79 1082 138 HOH HOH . H 4 HOH A 80 1083 143 HOH HOH . H 4 HOH A 81 1084 144 HOH HOH . H 4 HOH A 82 1085 146 HOH HOH . H 4 HOH A 83 1086 147 HOH HOH . H 4 HOH A 84 1087 149 HOH HOH . H 4 HOH A 85 1088 150 HOH HOH . H 4 HOH A 86 1089 155 HOH HOH . H 4 HOH A 87 1090 156 HOH HOH . H 4 HOH A 88 1091 158 HOH HOH . H 4 HOH A 89 1092 159 HOH HOH . H 4 HOH A 90 1093 160 HOH HOH . H 4 HOH A 91 1094 161 HOH HOH . H 4 HOH A 92 1095 166 HOH HOH . H 4 HOH A 93 1096 168 HOH HOH . H 4 HOH A 94 1097 169 HOH HOH . H 4 HOH A 95 1098 170 HOH HOH . H 4 HOH A 96 1099 172 HOH HOH . H 4 HOH A 97 1100 173 HOH HOH . H 4 HOH A 98 1101 176 HOH HOH . H 4 HOH A 99 1102 179 HOH HOH . H 4 HOH A 100 1103 180 HOH HOH . H 4 HOH A 101 1104 181 HOH HOH . H 4 HOH A 102 1105 182 HOH HOH . H 4 HOH A 103 1106 187 HOH HOH . H 4 HOH A 104 1107 189 HOH HOH . H 4 HOH A 105 1108 191 HOH HOH . H 4 HOH A 106 1109 192 HOH HOH . H 4 HOH A 107 1110 193 HOH HOH . H 4 HOH A 108 1111 195 HOH HOH . H 4 HOH A 109 1112 196 HOH HOH . H 4 HOH A 110 1113 197 HOH HOH . H 4 HOH A 111 1114 201 HOH HOH . H 4 HOH A 112 1115 205 HOH HOH . H 4 HOH A 113 1116 207 HOH HOH . I 4 HOH B 1 1514 2 HOH HOH . I 4 HOH B 2 1515 9 HOH HOH . I 4 HOH B 3 1516 10 HOH HOH . I 4 HOH B 4 1517 13 HOH HOH . I 4 HOH B 5 1518 15 HOH HOH . I 4 HOH B 6 1519 16 HOH HOH . I 4 HOH B 7 1520 17 HOH HOH . I 4 HOH B 8 1521 18 HOH HOH . I 4 HOH B 9 1522 19 HOH HOH . I 4 HOH B 10 1523 22 HOH HOH . I 4 HOH B 11 1524 24 HOH HOH . I 4 HOH B 12 1525 26 HOH HOH . I 4 HOH B 13 1526 32 HOH HOH . I 4 HOH B 14 1527 33 HOH HOH . I 4 HOH B 15 1528 45 HOH HOH . I 4 HOH B 16 1529 47 HOH HOH . I 4 HOH B 17 1530 49 HOH HOH . I 4 HOH B 18 1531 50 HOH HOH . I 4 HOH B 19 1532 51 HOH HOH . I 4 HOH B 20 1533 52 HOH HOH . I 4 HOH B 21 1534 58 HOH HOH . I 4 HOH B 22 1535 59 HOH HOH . I 4 HOH B 23 1536 60 HOH HOH . I 4 HOH B 24 1537 67 HOH HOH . I 4 HOH B 25 1538 69 HOH HOH . I 4 HOH B 26 1539 70 HOH HOH . I 4 HOH B 27 1540 75 HOH HOH . I 4 HOH B 28 1541 76 HOH HOH . I 4 HOH B 29 1542 79 HOH HOH . I 4 HOH B 30 1543 81 HOH HOH . I 4 HOH B 31 1544 82 HOH HOH . I 4 HOH B 32 1545 85 HOH HOH . I 4 HOH B 33 1546 87 HOH HOH . I 4 HOH B 34 1547 89 HOH HOH . I 4 HOH B 35 1548 90 HOH HOH . I 4 HOH B 36 1549 93 HOH HOH . I 4 HOH B 37 1550 95 HOH HOH . I 4 HOH B 38 1551 98 HOH HOH . I 4 HOH B 39 1552 101 HOH HOH . I 4 HOH B 40 1553 102 HOH HOH . I 4 HOH B 41 1554 103 HOH HOH . I 4 HOH B 42 1555 105 HOH HOH . I 4 HOH B 43 1556 106 HOH HOH . I 4 HOH B 44 1557 109 HOH HOH . I 4 HOH B 45 1558 111 HOH HOH . I 4 HOH B 46 1559 112 HOH HOH . I 4 HOH B 47 1560 115 HOH HOH . I 4 HOH B 48 1561 116 HOH HOH . I 4 HOH B 49 1562 117 HOH HOH . I 4 HOH B 50 1563 119 HOH HOH . I 4 HOH B 51 1564 121 HOH HOH . I 4 HOH B 52 1565 123 HOH HOH . I 4 HOH B 53 1566 126 HOH HOH . I 4 HOH B 54 1567 128 HOH HOH . I 4 HOH B 55 1568 129 HOH HOH . I 4 HOH B 56 1569 130 HOH HOH . I 4 HOH B 57 1570 131 HOH HOH . I 4 HOH B 58 1571 133 HOH HOH . I 4 HOH B 59 1572 134 HOH HOH . I 4 HOH B 60 1573 139 HOH HOH . I 4 HOH B 61 1574 140 HOH HOH . I 4 HOH B 62 1575 141 HOH HOH . I 4 HOH B 63 1576 142 HOH HOH . I 4 HOH B 64 1577 145 HOH HOH . I 4 HOH B 65 1578 148 HOH HOH . I 4 HOH B 66 1579 151 HOH HOH . I 4 HOH B 67 1580 152 HOH HOH . I 4 HOH B 68 1581 153 HOH HOH . I 4 HOH B 69 1582 154 HOH HOH . I 4 HOH B 70 1583 157 HOH HOH . I 4 HOH B 71 1584 162 HOH HOH . I 4 HOH B 72 1585 163 HOH HOH . I 4 HOH B 73 1586 164 HOH HOH . I 4 HOH B 74 1587 165 HOH HOH . I 4 HOH B 75 1588 167 HOH HOH . I 4 HOH B 76 1589 171 HOH HOH . I 4 HOH B 77 1590 174 HOH HOH . I 4 HOH B 78 1591 175 HOH HOH . I 4 HOH B 79 1592 177 HOH HOH . I 4 HOH B 80 1593 178 HOH HOH . I 4 HOH B 81 1594 183 HOH HOH . I 4 HOH B 82 1595 184 HOH HOH . I 4 HOH B 83 1596 185 HOH HOH . I 4 HOH B 84 1597 186 HOH HOH . I 4 HOH B 85 1598 188 HOH HOH . I 4 HOH B 86 1599 190 HOH HOH . I 4 HOH B 87 1600 194 HOH HOH . I 4 HOH B 88 1601 198 HOH HOH . I 4 HOH B 89 1602 199 HOH HOH . I 4 HOH B 90 1603 200 HOH HOH . I 4 HOH B 91 1604 202 HOH HOH . I 4 HOH B 92 1605 203 HOH HOH . I 4 HOH B 93 1606 204 HOH HOH . I 4 HOH B 94 1607 206 HOH HOH . I 4 HOH B 95 1608 208 HOH HOH . I 4 HOH B 96 1609 209 HOH HOH . I 4 HOH B 97 1610 210 HOH HOH . I 4 HOH B 98 1611 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 3 47.312 47.094 11.033 1 16.36 ? N1 PLP 513 A 1 HETATM 2 C C2 PLP . . . E 3 47.088 45.869 11.602 1 18.4 ? C2 PLP 513 A 1 HETATM 3 C C2A PLP . . . E 3 48.285 45.053 12.105 1 15.99 ? C2A PLP 513 A 1 HETATM 4 C C3 PLP . . . E 3 45.789 45.377 11.704 1 18.64 ? C3 PLP 513 A 1 HETATM 5 O O3 PLP . . . E 3 45.565 44.152 12.288 1 19.45 ? O3 PLP 513 A 1 HETATM 6 C C4 PLP . . . E 3 44.718 46.124 11.23 1 19.15 ? C4 PLP 513 A 1 HETATM 7 C C4A PLP . . . E 3 43.302 45.543 11.369 1 17.62 ? C4A PLP 513 A 1 HETATM 8 C C5 PLP . . . E 3 44.986 47.381 10.647 1 18.99 ? C5 PLP 513 A 1 HETATM 9 C C6 PLP . . . E 3 46.282 47.839 10.563 1 17.73 ? C6 PLP 513 A 1 HETATM 10 C C5A PLP . . . E 3 43.91 48.285 10.088 1 19.78 ? C5A PLP 513 A 1 HETATM 11 O O4P PLP . . . E 3 43.14 48.916 11.121 1 20.16 ? O4P PLP 513 A 1 HETATM 12 P P PLP . . . E 3 41.658 49.505 10.83 1 16.47 ? P PLP 513 A 1 HETATM 13 O O1P PLP . . . E 3 41.022 48.61 9.85 1 17.67 ? O1P PLP 513 A 1 HETATM 14 O O2P PLP . . . E 3 42.003 50.887 10.185 1 15.42 ? O2P PLP 513 A 1 HETATM 15 O O3P PLP . . . E 3 41.024 49.747 12.136 1 15.15 ? O3P PLP 513 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #