data_1UIY # _model_server_result.job_id PkrYLg_HvP2cc_lEOP2tyg _model_server_result.datetime_utc '2024-11-25 20:26:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1UIY # _exptl.entry_id 1UIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UIY _cell.length_a 131.233 _cell.length_b 131.233 _cell.length_c 110.608 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 131.233 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 65.6165 113.651112 0 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 65.6165 -37.883704 73.738667 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 75.767408 73.738667 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 131.233 75.767408 73.738667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C GLU 26 A GLU 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 27 A MSE 27 1_555 A N ALA 28 A ALA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C LEU 83 A LEU 83 1_555 A N MSE 84 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C MSE 84 A MSE 84 1_555 A N ARG 85 A ARG 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C VAL 120 A VAL 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 121 A MSE 121 1_555 A N ASP 122 A ASP 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLY 215 A GLY 215 1_555 A N MSE 216 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C MSE 216 A MSE 216 1_555 A N GLY 217 A GLY 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 1UIY _atom_sites.fract_transf_matrix[1][1] 0.00762 _atom_sites.fract_transf_matrix[1][2] 0.0044 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DIO A 1 500 500 DIO DOX . C 3 GOL A 1 300 300 GOL GOL . D 3 GOL A 1 400 400 GOL GOL . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 6 HOH HOH . E 4 HOH A 6 506 7 HOH HOH . E 4 HOH A 7 507 8 HOH HOH . E 4 HOH A 8 508 9 HOH HOH . E 4 HOH A 9 509 10 HOH HOH . E 4 HOH A 10 510 11 HOH HOH . E 4 HOH A 11 511 12 HOH HOH . E 4 HOH A 12 512 13 HOH HOH . E 4 HOH A 13 513 14 HOH HOH . E 4 HOH A 14 514 15 HOH HOH . E 4 HOH A 15 515 16 HOH HOH . E 4 HOH A 16 516 17 HOH HOH . E 4 HOH A 17 517 18 HOH HOH . E 4 HOH A 18 518 19 HOH HOH . E 4 HOH A 19 519 20 HOH HOH . E 4 HOH A 20 520 21 HOH HOH . E 4 HOH A 21 521 22 HOH HOH . E 4 HOH A 22 522 23 HOH HOH . E 4 HOH A 23 523 24 HOH HOH . E 4 HOH A 24 524 25 HOH HOH . E 4 HOH A 25 525 26 HOH HOH . E 4 HOH A 26 526 27 HOH HOH . E 4 HOH A 27 527 28 HOH HOH . E 4 HOH A 28 528 29 HOH HOH . E 4 HOH A 29 529 30 HOH HOH . E 4 HOH A 30 530 31 HOH HOH . E 4 HOH A 31 531 32 HOH HOH . E 4 HOH A 32 532 33 HOH HOH . E 4 HOH A 33 533 34 HOH HOH . E 4 HOH A 34 534 35 HOH HOH . E 4 HOH A 35 535 36 HOH HOH . E 4 HOH A 36 536 37 HOH HOH . E 4 HOH A 37 537 38 HOH HOH . E 4 HOH A 38 538 39 HOH HOH . E 4 HOH A 39 539 40 HOH HOH . E 4 HOH A 40 540 41 HOH HOH . E 4 HOH A 41 541 42 HOH HOH . E 4 HOH A 42 542 43 HOH HOH . E 4 HOH A 43 543 44 HOH HOH . E 4 HOH A 44 544 45 HOH HOH . E 4 HOH A 45 545 46 HOH HOH . E 4 HOH A 46 546 47 HOH HOH . E 4 HOH A 47 547 48 HOH HOH . E 4 HOH A 48 548 49 HOH HOH . E 4 HOH A 49 549 50 HOH HOH . E 4 HOH A 50 550 51 HOH HOH . E 4 HOH A 51 551 52 HOH HOH . E 4 HOH A 52 552 53 HOH HOH . E 4 HOH A 53 553 54 HOH HOH . E 4 HOH A 54 554 55 HOH HOH . E 4 HOH A 55 555 56 HOH HOH . E 4 HOH A 56 556 57 HOH HOH . E 4 HOH A 57 557 58 HOH HOH . E 4 HOH A 58 558 59 HOH HOH . E 4 HOH A 59 559 60 HOH HOH . E 4 HOH A 60 560 61 HOH HOH . E 4 HOH A 61 561 62 HOH HOH . E 4 HOH A 62 562 63 HOH HOH . E 4 HOH A 63 563 64 HOH HOH . E 4 HOH A 64 564 65 HOH HOH . E 4 HOH A 65 565 66 HOH HOH . E 4 HOH A 66 566 67 HOH HOH . E 4 HOH A 67 567 68 HOH HOH . E 4 HOH A 68 568 69 HOH HOH . E 4 HOH A 69 569 70 HOH HOH . E 4 HOH A 70 570 71 HOH HOH . E 4 HOH A 71 571 72 HOH HOH . E 4 HOH A 72 572 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 43.326 31.209 23.582 1 59.27 ? C1 GOL 400 A 1 HETATM 2 O O1 GOL . . . D 3 44.544 30.737 24.056 1 56.6 ? O1 GOL 400 A 1 HETATM 3 C C2 GOL . . . D 3 42.21 30.396 24.183 1 59.78 ? C2 GOL 400 A 1 HETATM 4 O O2 GOL . . . D 3 41.082 30.298 23.233 1 58.23 ? O2 GOL 400 A 1 HETATM 5 C C3 GOL . . . D 3 41.732 31.043 25.525 1 58.01 ? C3 GOL 400 A 1 HETATM 6 O O3 GOL . . . D 3 41.559 30.041 26.613 1 55.29 ? O3 GOL 400 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #