data_1UJW # _model_server_result.job_id JKm0X002vqvlxl7tBOCxPA _model_server_result.datetime_utc '2024-11-13 21:30:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ujw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":704}' # _entry.id 1UJW # _exptl.entry_id 1UJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UJW _cell.length_a 76.933 _cell.length_b 80.098 _cell.length_c 233.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3 GP1 . A GP1 801 1_555 M C2 AAE . A AAE 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale2 C N2 GP1 . A GP1 801 1_555 N C1J LIM . A LIM 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale3 D N2 GP1 . A GP1 811 1_555 E C1J LIM . A LIM 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 128 n n C1 C2 GOL sing 129 n n C1 H11 GOL sing 130 n n C1 H12 GOL sing 131 n n O1 HO1 GOL sing 132 n n C2 O2 GOL sing 133 n n C2 C3 GOL sing 134 n n C2 H2 GOL sing 135 n n O2 HO2 GOL sing 136 n n C3 O3 GOL sing 137 n n C3 H31 GOL sing 138 n n C3 H32 GOL sing 139 n n O3 HO3 GOL sing 140 n n # _atom_sites.entry_id 1UJW _atom_sites.fract_transf_matrix[1][1] 0.012998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GP1 A 1 801 801 GP1 GP1 . D 3 GP1 A 1 811 811 GP1 GP1 . E 4 LIM A 1 812 812 LIM LIM . F 5 LDA A 1 601 601 LDA LDA . G 5 LDA A 1 602 602 LDA LDA . H 5 LDA A 1 603 603 LDA LDA . I 5 LDA A 1 604 604 LDA LDA . J 5 LDA A 1 605 605 LDA LDA . K 5 LDA A 1 606 606 LDA LDA . L 5 LDA A 1 607 607 LDA LDA . M 6 AAE A 1 802 802 AAE LIN . N 4 LIM A 1 803 803 LIM LIM . O 7 GOL A 1 701 701 GOL GOL . P 7 GOL A 1 702 702 GOL GOL . Q 7 GOL A 1 703 703 GOL GOL . R 7 GOL A 1 704 704 GOL GOL . S 7 GOL A 1 705 705 GOL GOL . T 7 GOL A 1 706 706 GOL GOL . U 7 GOL A 1 707 707 GOL GOL . V 7 GOL A 1 708 708 GOL GOL . W 8 HOH A 1 901 901 HOH HOH . W 8 HOH A 2 902 902 HOH HOH . W 8 HOH A 3 903 903 HOH HOH . W 8 HOH A 4 904 904 HOH HOH . W 8 HOH A 5 905 905 HOH HOH . W 8 HOH A 6 906 906 HOH HOH . W 8 HOH A 7 907 907 HOH HOH . W 8 HOH A 8 908 908 HOH HOH . W 8 HOH A 9 910 910 HOH HOH . X 8 HOH B 1 909 909 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . R 7 25.149 19.47 130.599 1 55.03 ? C1 GOL 704 A 1 HETATM 2 O O1 GOL . . . R 7 24.961 20.277 131.738 1 59.01 ? O1 GOL 704 A 1 HETATM 3 C C2 GOL . . . R 7 23.764 19.034 130.293 1 54.34 ? C2 GOL 704 A 1 HETATM 4 O O2 GOL . . . R 7 22.961 19.893 131.03 1 51.2 ? O2 GOL 704 A 1 HETATM 5 C C3 GOL . . . R 7 23.496 17.616 130.763 1 57.43 ? C3 GOL 704 A 1 HETATM 6 O O3 GOL . . . R 7 24.671 16.859 130.996 1 62 ? O3 GOL 704 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #