data_1UJW # _model_server_result.job_id ed3TiBlIRVS1b3zqi8gmpQ _model_server_result.datetime_utc '2024-11-13 21:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ujw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":811}' # _entry.id 1UJW # _exptl.entry_id 1UJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.151 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UJW _cell.length_a 76.933 _cell.length_b 80.098 _cell.length_c 233.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3 GP1 . A GP1 801 1_555 M C2 AAE . A AAE 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale2 C N2 GP1 . A GP1 801 1_555 N C1J LIM . A LIM 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale3 D N2 GP1 . A GP1 811 1_555 E C1J LIM . A LIM 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? # _chem_comp.formula 'C6 H14 N O8 P' _chem_comp.formula_weight 259.151 _chem_comp.id GP1 _chem_comp.mon_nstd_flag n _chem_comp.name 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'GLUCOSAMINE 1-PHOSPHATE;1-O-phosphono-alpha-D-glucosamine;2-amino-2-deoxy-1-O-phosphono-alpha-D-glucose;2-amino-2-deoxy-1-O-phosphono-D-glucose;2-amino-2-deoxy-1-O-phosphono-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GP1 sing 141 n n C1 O1 GP1 sing 142 n n C1 O5 GP1 sing 143 n n C1 H1 GP1 sing 144 n n C2 C3 GP1 sing 145 n n C2 N2 GP1 sing 146 n n C2 H2 GP1 sing 147 n n C3 C4 GP1 sing 148 n n C3 O3 GP1 sing 149 n n C3 H3 GP1 sing 150 n n C4 C5 GP1 sing 151 n n C4 O4 GP1 sing 152 n n C4 H4 GP1 sing 153 n n C5 C6 GP1 sing 154 n n C5 O5 GP1 sing 155 n n C5 H5 GP1 sing 156 n n C6 O6 GP1 sing 157 n n C6 H61 GP1 sing 158 n n C6 H62 GP1 sing 159 n n N2 HN21 GP1 sing 160 n n N2 HN22 GP1 sing 161 n n O1 P4B GP1 sing 162 n n O3 HO3 GP1 sing 163 n n O4 HO4 GP1 sing 164 n n O6 HO6 GP1 sing 165 n n O7B P4B GP1 sing 166 n n O7B HOP1 GP1 sing 167 n n P4B O8B GP1 doub 168 n n P4B O9B GP1 sing 169 n n O9B HOP2 GP1 sing 170 n n # _pdbx_chem_comp_identifier.comp_id GP1 _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3N _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1UJW _atom_sites.fract_transf_matrix[1][1] 0.012998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GP1 A 1 801 801 GP1 GP1 . D 3 GP1 A 1 811 811 GP1 GP1 . E 4 LIM A 1 812 812 LIM LIM . F 5 LDA A 1 601 601 LDA LDA . G 5 LDA A 1 602 602 LDA LDA . H 5 LDA A 1 603 603 LDA LDA . I 5 LDA A 1 604 604 LDA LDA . J 5 LDA A 1 605 605 LDA LDA . K 5 LDA A 1 606 606 LDA LDA . L 5 LDA A 1 607 607 LDA LDA . M 6 AAE A 1 802 802 AAE LIN . N 4 LIM A 1 803 803 LIM LIM . O 7 GOL A 1 701 701 GOL GOL . P 7 GOL A 1 702 702 GOL GOL . Q 7 GOL A 1 703 703 GOL GOL . R 7 GOL A 1 704 704 GOL GOL . S 7 GOL A 1 705 705 GOL GOL . T 7 GOL A 1 706 706 GOL GOL . U 7 GOL A 1 707 707 GOL GOL . V 7 GOL A 1 708 708 GOL GOL . W 8 HOH A 1 901 901 HOH HOH . W 8 HOH A 2 902 902 HOH HOH . W 8 HOH A 3 903 903 HOH HOH . W 8 HOH A 4 904 904 HOH HOH . W 8 HOH A 5 905 905 HOH HOH . W 8 HOH A 6 906 906 HOH HOH . W 8 HOH A 7 907 907 HOH HOH . W 8 HOH A 8 908 908 HOH HOH . W 8 HOH A 9 910 910 HOH HOH . X 8 HOH B 1 909 909 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GP1 . . . D 3 -17.266 48.93 99.623 1 87.91 ? C1 GP1 811 A 1 HETATM 2 C C2 GP1 . . . D 3 -17.197 47.641 100.473 1 86.75 ? C2 GP1 811 A 1 HETATM 3 C C3 GP1 . . . D 3 -16.871 46.34 99.693 1 87.59 ? C3 GP1 811 A 1 HETATM 4 C C4 GP1 . . . D 3 -16.802 46.375 98.122 1 87.47 ? C4 GP1 811 A 1 HETATM 5 C C5 GP1 . . . D 3 -16.844 47.736 97.371 1 86.49 ? C5 GP1 811 A 1 HETATM 6 C C6 GP1 . . . D 3 -17.644 47.688 96.053 1 85.72 ? C6 GP1 811 A 1 HETATM 7 N N2 GP1 . . . D 3 -16.317 47.791 101.661 1 84.87 ? N2 GP1 811 A 1 HETATM 8 O O1 GP1 . . . D 3 -16.136 49.701 100.027 1 90.04 ? O1 GP1 811 A 1 HETATM 9 O O3 GP1 . . . D 3 -17.75 45.288 100.155 1 88.79 ? O3 GP1 811 A 1 HETATM 10 O O4 GP1 . . . D 3 -15.68 45.604 97.625 1 87.68 ? O4 GP1 811 A 1 HETATM 11 O O6 GP1 . . . D 3 -18.621 48.723 95.958 1 85.07 ? O6 GP1 811 A 1 HETATM 12 O O5 GP1 . . . D 3 -17.177 48.892 98.171 1 88.07 ? O5 GP1 811 A 1 HETATM 13 O O7B GP1 . . . D 3 -14.59 50.074 97.99 1 95.18 ? O7B GP1 811 A 1 HETATM 14 P P4B GP1 . . . D 3 -14.665 49.407 99.378 1 95.19 ? P4B GP1 811 A 1 HETATM 15 O O8B GP1 . . . D 3 -13.814 50.036 100.492 1 92.83 ? O8B GP1 811 A 1 HETATM 16 O O9B GP1 . . . D 3 -14.586 47.899 99.199 1 92.7 ? O9B GP1 811 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #