data_1UKE # _model_server_result.job_id -C4zc53RVK5O9v1i8lnGqw _model_server_result.datetime_utc '2025-07-31 23:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":195}' # _entry.id 1UKE # _exptl.entry_id 1UKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.327 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-(ADENOSINE-5'-P5-(URIDINE-5')PENTAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UKE _cell.length_a 78.5 _cell.length_b 78.5 _cell.length_c 101.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2B UP5 . A UP5 195 1_555 B MG MG . A MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 C O2G UP5 . A UP5 195 1_555 B MG MG . A MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 B MG MG . A MG 196 1_555 D O HOH . A HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 B MG MG . A MG 196 1_555 D O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B MG MG . A MG 196 1_555 D O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 B MG MG . A MG 196 1_555 D O HOH . A HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C19 H28 N7 O24 P5' _chem_comp.formula_weight 893.327 _chem_comp.id UP5 _chem_comp.mon_nstd_flag . _chem_comp.name "P1-(ADENOSINE-5'-P5-(URIDINE-5')PENTAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9A C8A UP5 sing 358 n y N9A C4A UP5 sing 359 n y N9A C1F UP5 sing 360 n n C8A N7A UP5 doub 361 n y C8A H8A UP5 sing 362 n n N7A C5A UP5 sing 363 n y C5A C6A UP5 sing 364 n y C5A C4A UP5 doub 365 n y C6A N6A UP5 sing 366 n n C6A N1A UP5 doub 367 n y N6A H61A UP5 sing 368 n n N6A H62A UP5 sing 369 n n N1A C2A UP5 sing 370 n y C2A N3A UP5 doub 371 n y C2A H2A UP5 sing 372 n n N3A C4A UP5 sing 373 n y O5F C5F UP5 sing 374 n n O5F PA UP5 sing 375 n n C5F C4F UP5 sing 376 n n C5F H51A UP5 sing 377 n n C5F H52A UP5 sing 378 n n C4F O4F UP5 sing 379 n n C4F C3F UP5 sing 380 n n C4F H4F UP5 sing 381 n n O4F C1F UP5 sing 382 n n C3F O3F UP5 sing 383 n n C3F C2F UP5 sing 384 n n C3F H3F UP5 sing 385 n n O3F HO3A UP5 sing 386 n n C2F O2F UP5 sing 387 n n C2F C1F UP5 sing 388 n n C2F H2F UP5 sing 389 n n O2F HO2A UP5 sing 390 n n C1F H1F UP5 sing 391 n n PA O1A UP5 doub 392 n n PA O2A UP5 sing 393 n n PA O3A UP5 sing 394 n n O2A HOA2 UP5 sing 395 n n O3A PB UP5 sing 396 n n PB O1B UP5 doub 397 n n PB O2B UP5 sing 398 n n PB O3B UP5 sing 399 n n O2B HOB2 UP5 sing 400 n n O3B PG UP5 sing 401 n n PG O1G UP5 doub 402 n n PG O2G UP5 sing 403 n n PG O3G UP5 sing 404 n n O2G HOG2 UP5 sing 405 n n O3G PD UP5 sing 406 n n PD O1D UP5 doub 407 n n PD O2D UP5 sing 408 n n PD O3D UP5 sing 409 n n O2D HOD2 UP5 sing 410 n n O3D PE UP5 sing 411 n n PE O1E UP5 doub 412 n n PE O2E UP5 sing 413 n n PE O5J UP5 sing 414 n n O2E HOE2 UP5 sing 415 n n O5J C5J UP5 sing 416 n n C5J C4J UP5 sing 417 n n C5J H51U UP5 sing 418 n n C5J H52U UP5 sing 419 n n C4J O4J UP5 sing 420 n n C4J C3J UP5 sing 421 n n C4J H4J UP5 sing 422 n n O4J C1J UP5 sing 423 n n C3J O3J UP5 sing 424 n n C3J C2J UP5 sing 425 n n C3J H3J UP5 sing 426 n n O3J HO3' UP5 sing 427 n n C2J O2J UP5 sing 428 n n C2J C1J UP5 sing 429 n n C2J H2J UP5 sing 430 n n O2J HO2' UP5 sing 431 n n C1J N1U UP5 sing 432 n n C1J H1J UP5 sing 433 n n N1U C2U UP5 sing 434 n n N1U C6U UP5 sing 435 n n C2U O2X UP5 doub 436 n n C2U N3U UP5 sing 437 n n N3U C4U UP5 sing 438 n n N3U H3U UP5 sing 439 n n C4U O4U UP5 doub 440 n n C4U C5U UP5 sing 441 n n C5U C6U UP5 doub 442 n n C5U H5U UP5 sing 443 n n C6U H6U UP5 sing 444 n n # _atom_sites.entry_id 1UKE _atom_sites.fract_transf_matrix[1][1] 0.012739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 196 196 MG MG . C 3 UP5 A 1 195 195 UP5 UP5 . D 4 HOH A 1 197 197 HOH HOH . D 4 HOH A 2 198 198 HOH HOH . D 4 HOH A 3 199 199 HOH HOH . D 4 HOH A 4 200 200 HOH HOH . D 4 HOH A 5 201 201 HOH HOH . D 4 HOH A 6 202 202 HOH HOH . D 4 HOH A 7 203 203 HOH HOH . D 4 HOH A 8 204 204 HOH HOH . D 4 HOH A 9 205 205 HOH HOH . D 4 HOH A 10 206 206 HOH HOH . D 4 HOH A 11 207 207 HOH HOH . D 4 HOH A 12 208 208 HOH HOH . D 4 HOH A 13 209 209 HOH HOH . D 4 HOH A 14 210 210 HOH HOH . D 4 HOH A 15 211 211 HOH HOH . D 4 HOH A 16 212 212 HOH HOH . D 4 HOH A 17 213 213 HOH HOH . D 4 HOH A 18 214 214 HOH HOH . D 4 HOH A 19 215 215 HOH HOH . D 4 HOH A 20 216 216 HOH HOH . D 4 HOH A 21 217 217 HOH HOH . D 4 HOH A 22 218 218 HOH HOH . D 4 HOH A 23 219 219 HOH HOH . D 4 HOH A 24 220 220 HOH HOH . D 4 HOH A 25 221 221 HOH HOH . D 4 HOH A 26 222 222 HOH HOH . D 4 HOH A 27 223 223 HOH HOH . D 4 HOH A 28 224 224 HOH HOH . D 4 HOH A 29 225 225 HOH HOH . D 4 HOH A 30 226 226 HOH HOH . D 4 HOH A 31 227 227 HOH HOH . D 4 HOH A 32 228 228 HOH HOH . D 4 HOH A 33 229 229 HOH HOH . D 4 HOH A 34 230 230 HOH HOH . D 4 HOH A 35 231 231 HOH HOH . D 4 HOH A 36 232 232 HOH HOH . D 4 HOH A 37 233 233 HOH HOH . D 4 HOH A 38 234 234 HOH HOH . D 4 HOH A 39 235 235 HOH HOH . D 4 HOH A 40 236 236 HOH HOH . D 4 HOH A 41 237 237 HOH HOH . D 4 HOH A 42 238 238 HOH HOH . D 4 HOH A 43 239 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9A UP5 . . . C 3 35.001 60.668 -7.101 1 16.33 ? N9A UP5 195 A 1 HETATM 2 C C8A UP5 . . . C 3 36.34 60.685 -7.46 1 12.24 ? C8A UP5 195 A 1 HETATM 3 N N7A UP5 . . . C 3 36.833 59.534 -7.718 1 16.26 ? N7A UP5 195 A 1 HETATM 4 C C5A UP5 . . . C 3 35.75 58.688 -7.471 1 12.28 ? C5A UP5 195 A 1 HETATM 5 C C6A UP5 . . . C 3 35.624 57.297 -7.561 1 14.47 ? C6A UP5 195 A 1 HETATM 6 N N6A UP5 . . . C 3 36.629 56.481 -7.833 1 17.34 ? N6A UP5 195 A 1 HETATM 7 N N1A UP5 . . . C 3 34.383 56.77 -7.383 1 16.85 ? N1A UP5 195 A 1 HETATM 8 C C2A UP5 . . . C 3 33.375 57.6 -7.089 1 17.33 ? C2A UP5 195 A 1 HETATM 9 N N3A UP5 . . . C 3 33.448 58.9 -6.83 1 16.43 ? N3A UP5 195 A 1 HETATM 10 C C4A UP5 . . . C 3 34.67 59.381 -7.081 1 13.62 ? C4A UP5 195 A 1 HETATM 11 O O5F UP5 . . . C 3 35.871 64.068 -8.497 1 15.79 ? O5F UP5 195 A 1 HETATM 12 C C5F UP5 . . . C 3 34.528 64.37 -8.93 1 14.99 ? C5F UP5 195 A 1 HETATM 13 C C4F UP5 . . . C 3 33.581 63.723 -7.982 1 15.09 ? C4F UP5 195 A 1 HETATM 14 O O4F UP5 . . . C 3 33.827 62.329 -8.154 1 17.88 ? O4F UP5 195 A 1 HETATM 15 C C3F UP5 . . . C 3 33.866 64.087 -6.541 1 19.91 ? C3F UP5 195 A 1 HETATM 16 O O3F UP5 . . . C 3 32.681 64.267 -5.83 1 25.65 ? O3F UP5 195 A 1 HETATM 17 C C2F UP5 . . . C 3 34.639 62.897 -6.055 1 21.76 ? C2F UP5 195 A 1 HETATM 18 O O2F UP5 . . . C 3 34.438 62.659 -4.705 1 27.15 ? O2F UP5 195 A 1 HETATM 19 C C1F UP5 . . . C 3 34.072 61.77 -6.907 1 16.75 ? C1F UP5 195 A 1 HETATM 20 P PA UP5 . . . C 3 37.167 64.91 -8.789 1 14.43 ? PA UP5 195 A 1 HETATM 21 O O1A UP5 . . . C 3 38.276 64.2 -8.202 1 15.75 ? O1A UP5 195 A 1 HETATM 22 O O2A UP5 . . . C 3 36.988 66.257 -8.376 1 13.56 ? O2A UP5 195 A 1 HETATM 23 O O3A UP5 . . . C 3 37.352 64.868 -10.385 1 16.66 ? O3A UP5 195 A 1 HETATM 24 P PB UP5 . . . C 3 38.099 65.681 -11.536 1 14.62 ? PB UP5 195 A 1 HETATM 25 O O1B UP5 . . . C 3 38.557 64.783 -12.568 1 10.12 ? O1B UP5 195 A 1 HETATM 26 O O2B UP5 . . . C 3 39.13 66.525 -10.938 1 14.09 ? O2B UP5 195 A 1 HETATM 27 O O3B UP5 . . . C 3 36.986 66.614 -12.123 1 15.35 ? O3B UP5 195 A 1 HETATM 28 P PG UP5 . . . C 3 36.576 68.145 -12.094 1 15.04 ? PG UP5 195 A 1 HETATM 29 O O1G UP5 . . . C 3 35.332 68.285 -11.401 1 20.49 ? O1G UP5 195 A 1 HETATM 30 O O2G UP5 . . . C 3 37.687 68.95 -11.6 1 17.42 ? O2G UP5 195 A 1 HETATM 31 O O3G UP5 . . . C 3 36.342 68.49 -13.62 1 18.47 ? O3G UP5 195 A 1 HETATM 32 P PD UP5 . . . C 3 37.121 69.067 -14.824 1 17.99 ? PD UP5 195 A 1 HETATM 33 O O1D UP5 . . . C 3 38.304 68.232 -15.106 1 16.93 ? O1D UP5 195 A 1 HETATM 34 O O2D UP5 . . . C 3 36.163 69.245 -15.893 1 21.95 ? O2D UP5 195 A 1 HETATM 35 O O3D UP5 . . . C 3 37.568 70.531 -14.323 1 17.57 ? O3D UP5 195 A 1 HETATM 36 P PE UP5 . . . C 3 38.852 71.428 -14.15 1 16.8 ? PE UP5 195 A 1 HETATM 37 O O1E UP5 . . . C 3 38.801 72.079 -12.859 1 10.48 ? O1E UP5 195 A 1 HETATM 38 O O2E UP5 . . . C 3 40.031 70.645 -14.424 1 18.57 ? O2E UP5 195 A 1 HETATM 39 O O5J UP5 . . . C 3 38.693 72.563 -15.279 1 19.4 ? O5J UP5 195 A 1 HETATM 40 C C5J UP5 . . . C 3 37.484 73.342 -15.459 1 19.02 ? C5J UP5 195 A 1 HETATM 41 C C4J UP5 . . . C 3 37.603 74.18 -16.697 1 19.63 ? C4J UP5 195 A 1 HETATM 42 O O4J UP5 . . . C 3 38.804 74.88 -16.549 1 18.95 ? O4J UP5 195 A 1 HETATM 43 C C3J UP5 . . . C 3 37.75 73.399 -17.985 1 17.29 ? C3J UP5 195 A 1 HETATM 44 O O3J UP5 . . . C 3 36.537 72.892 -18.441 1 18.44 ? O3J UP5 195 A 1 HETATM 45 C C2J UP5 . . . C 3 38.298 74.481 -18.867 1 16.67 ? C2J UP5 195 A 1 HETATM 46 O O2J UP5 . . . C 3 37.308 75.346 -19.346 1 15.28 ? O2J UP5 195 A 1 HETATM 47 C C1J UP5 . . . C 3 39.247 75.199 -17.883 1 17.08 ? C1J UP5 195 A 1 HETATM 48 N N1U UP5 . . . C 3 40.607 74.782 -17.965 1 19.25 ? N1U UP5 195 A 1 HETATM 49 C C2U UP5 . . . C 3 41.419 75.367 -18.858 1 18.46 ? C2U UP5 195 A 1 HETATM 50 O O2X UP5 . . . C 3 40.865 76.278 -19.686 1 17.95 ? O2X UP5 195 A 1 HETATM 51 N N3U UP5 . . . C 3 42.704 75.093 -19.083 1 19.68 ? N3U UP5 195 A 1 HETATM 52 C C4U UP5 . . . C 3 43.36 74.22 -18.286 1 16.87 ? C4U UP5 195 A 1 HETATM 53 O O4U UP5 . . . C 3 44.652 73.943 -18.605 1 20.14 ? O4U UP5 195 A 1 HETATM 54 C C5U UP5 . . . C 3 42.619 73.655 -17.299 1 17.73 ? C5U UP5 195 A 1 HETATM 55 C C6U UP5 . . . C 3 41.301 73.861 -17.097 1 12.6 ? C6U UP5 195 A 1 HETATM 56 H H8A UP5 . . . C 3 36.924 61.604 -7.518 1 0 ? H8A UP5 195 A 1 HETATM 57 H H61A UP5 . . . C 3 37.415 56.42 -7.201 1 0 ? H61A UP5 195 A 1 HETATM 58 H H62A UP5 . . . C 3 36.61 55.919 -8.672 1 0 ? H62A UP5 195 A 1 HETATM 59 H H2A UP5 . . . C 3 32.379 57.157 -7.059 1 0 ? H2A UP5 195 A 1 HETATM 60 H H51A UP5 . . . C 3 34.367 63.984 -9.936 1 0 ? H51A UP5 195 A 1 HETATM 61 H H52A UP5 . . . C 3 34.372 65.449 -8.931 1 0 ? H52A UP5 195 A 1 HETATM 62 H H4F UP5 . . . C 3 32.548 63.969 -8.224 1 0 ? H4F UP5 195 A 1 HETATM 63 H H3F UP5 . . . C 3 34.45 65.003 -6.466 1 0 ? H3F UP5 195 A 1 HETATM 64 H HO3A UP5 . . . C 3 32.921 64.495 -4.929 1 0 ? HO3A UP5 195 A 1 HETATM 65 H H2F UP5 . . . C 3 35.71 62.992 -6.227 1 0 ? H2F UP5 195 A 1 HETATM 66 H HO2A UP5 . . . C 3 34.961 61.889 -4.47 1 0 ? HO2A UP5 195 A 1 HETATM 67 H H1F UP5 . . . C 3 33.145 61.402 -6.469 1 0 ? H1F UP5 195 A 1 HETATM 68 H H51U UP5 . . . C 3 36.63 72.671 -15.555 1 0 ? H51U UP5 195 A 1 HETATM 69 H H52U UP5 . . . C 3 37.336 73.989 -14.595 1 0 ? H52U UP5 195 A 1 HETATM 70 H H4J UP5 . . . C 3 36.765 74.87 -16.783 1 0 ? H4J UP5 195 A 1 HETATM 71 H H3J UP5 . . . C 3 38.436 72.559 -17.885 1 0 ? H3J UP5 195 A 1 HETATM 72 H HO3' UP5 . . . C 3 36.715 72.414 -19.254 1 0 ? HO3' UP5 195 A 1 HETATM 73 H H2J UP5 . . . C 3 38.861 74.105 -19.72 1 0 ? H2J UP5 195 A 1 HETATM 74 H HO2' UP5 . . . C 3 36.737 75.565 -18.606 1 0 ? HO2' UP5 195 A 1 HETATM 75 H H1J UP5 . . . C 3 39.171 76.27 -18.065 1 0 ? H1J UP5 195 A 1 HETATM 76 H H3U UP5 . . . C 3 43.187 75.537 -19.848 1 0 ? H3U UP5 195 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 967 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 76 #