data_1UKM # _model_server_result.job_id HpqvwoXF95vA98tkjy0n9g _model_server_result.datetime_utc '2024-11-05 01:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ukm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1301}' # _entry.id 1UKM # _exptl.entry_id 1UKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UKM _cell.length_a 46.57 _cell.length_b 59.933 _cell.length_c 115.743 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 15 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 32 A CYS 32 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 81 A CYS 81 1_555 B SG CYS 74 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 104 A CYS 104 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 1 B CYS 1 1_555 B SG CYS 12 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 29 B CYS 29 1_555 B SG CYS 120 B CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 95 B CYS 95 1_555 B SG CYS 112 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 B ND2 ASN 21 B ASN 21 1_555 G C1 NAG . B NAG 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1UKM _atom_sites.fract_transf_matrix[1][1] 0.021473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 1304 1304 CL CL . D 4 GOL A 1 1300 1300 GOL CRY . E 4 GOL A 1 1301 1301 GOL CRY . F 4 GOL A 1 1302 1302 GOL CRY . G 5 NAG B 1 1022 1022 NAG NAG . H 4 GOL B 1 1303 1303 GOL CRY . I 6 HOH A 1 1305 1 HOH HOH . I 6 HOH A 2 1306 2 HOH HOH . I 6 HOH A 3 1307 3 HOH HOH . I 6 HOH A 4 1308 4 HOH HOH . I 6 HOH A 5 1309 7 HOH HOH . I 6 HOH A 6 1310 8 HOH HOH . I 6 HOH A 7 1311 9 HOH HOH . I 6 HOH A 8 1312 10 HOH HOH . I 6 HOH A 9 1313 11 HOH HOH . I 6 HOH A 10 1314 12 HOH HOH . I 6 HOH A 11 1315 13 HOH HOH . I 6 HOH A 12 1316 14 HOH HOH . I 6 HOH A 13 1317 15 HOH HOH . I 6 HOH A 14 1318 17 HOH HOH . I 6 HOH A 15 1319 19 HOH HOH . I 6 HOH A 16 1320 22 HOH HOH . I 6 HOH A 17 1321 24 HOH HOH . I 6 HOH A 18 1322 28 HOH HOH . I 6 HOH A 19 1323 29 HOH HOH . I 6 HOH A 20 1324 31 HOH HOH . I 6 HOH A 21 1325 32 HOH HOH . I 6 HOH A 22 1326 33 HOH HOH . I 6 HOH A 23 1327 34 HOH HOH . I 6 HOH A 24 1328 37 HOH HOH . I 6 HOH A 25 1329 42 HOH HOH . I 6 HOH A 26 1330 45 HOH HOH . I 6 HOH A 27 1331 46 HOH HOH . I 6 HOH A 28 1332 47 HOH HOH . I 6 HOH A 29 1333 48 HOH HOH . I 6 HOH A 30 1334 49 HOH HOH . I 6 HOH A 31 1335 50 HOH HOH . I 6 HOH A 32 1336 51 HOH HOH . I 6 HOH A 33 1337 52 HOH HOH . I 6 HOH A 34 1338 53 HOH HOH . I 6 HOH A 35 1339 54 HOH HOH . I 6 HOH A 36 1340 55 HOH HOH . I 6 HOH A 37 1341 56 HOH HOH . I 6 HOH A 38 1342 57 HOH HOH . I 6 HOH A 39 1343 58 HOH HOH . I 6 HOH A 40 1344 60 HOH HOH . I 6 HOH A 41 1345 63 HOH HOH . I 6 HOH A 42 1346 65 HOH HOH . I 6 HOH A 43 1347 68 HOH HOH . I 6 HOH A 44 1348 69 HOH HOH . I 6 HOH A 45 1349 75 HOH HOH . I 6 HOH A 46 1350 77 HOH HOH . I 6 HOH A 47 1351 80 HOH HOH . I 6 HOH A 48 1352 83 HOH HOH . I 6 HOH A 49 1353 87 HOH HOH . I 6 HOH A 50 1354 88 HOH HOH . I 6 HOH A 51 1355 89 HOH HOH . I 6 HOH A 52 1356 90 HOH HOH . I 6 HOH A 53 1357 91 HOH HOH . I 6 HOH A 54 1358 92 HOH HOH . I 6 HOH A 55 1359 93 HOH HOH . I 6 HOH A 56 1360 94 HOH HOH . I 6 HOH A 57 1361 96 HOH HOH . I 6 HOH A 58 1362 97 HOH HOH . I 6 HOH A 59 1363 99 HOH HOH . I 6 HOH A 60 1364 101 HOH HOH . I 6 HOH A 61 1365 103 HOH HOH . I 6 HOH A 62 1366 105 HOH HOH . I 6 HOH A 63 1367 106 HOH HOH . I 6 HOH A 64 1368 107 HOH HOH . I 6 HOH A 65 1369 109 HOH HOH . I 6 HOH A 66 1370 110 HOH HOH . I 6 HOH A 67 1371 111 HOH HOH . I 6 HOH A 68 1372 112 HOH HOH . I 6 HOH A 69 1373 113 HOH HOH . I 6 HOH A 70 1374 114 HOH HOH . I 6 HOH A 71 1375 117 HOH HOH . I 6 HOH A 72 1376 121 HOH HOH . I 6 HOH A 73 1377 125 HOH HOH . I 6 HOH A 74 1378 126 HOH HOH . I 6 HOH A 75 1379 127 HOH HOH . I 6 HOH A 76 1380 129 HOH HOH . I 6 HOH A 77 1381 131 HOH HOH . I 6 HOH A 78 1382 132 HOH HOH . I 6 HOH A 79 1383 133 HOH HOH . I 6 HOH A 80 1384 134 HOH HOH . I 6 HOH A 81 1385 137 HOH HOH . I 6 HOH A 82 1386 139 HOH HOH . I 6 HOH A 83 1387 140 HOH HOH . I 6 HOH A 84 1388 144 HOH HOH . I 6 HOH A 85 1389 145 HOH HOH . I 6 HOH A 86 1390 147 HOH HOH . I 6 HOH A 87 1391 148 HOH HOH . I 6 HOH A 88 1392 149 HOH HOH . I 6 HOH A 89 1393 152 HOH HOH . I 6 HOH A 90 1394 153 HOH HOH . I 6 HOH A 91 1395 154 HOH HOH . I 6 HOH A 92 1396 155 HOH HOH . I 6 HOH A 93 1397 156 HOH HOH . I 6 HOH A 94 1398 159 HOH HOH . I 6 HOH A 95 1399 161 HOH HOH . I 6 HOH A 96 1400 162 HOH HOH . I 6 HOH A 97 1401 164 HOH HOH . I 6 HOH A 98 1402 166 HOH HOH . I 6 HOH A 99 1403 167 HOH HOH . I 6 HOH A 100 1404 168 HOH HOH . I 6 HOH A 101 1405 169 HOH HOH . I 6 HOH A 102 1406 171 HOH HOH . I 6 HOH A 103 1407 172 HOH HOH . I 6 HOH A 104 1408 173 HOH HOH . I 6 HOH A 105 1409 174 HOH HOH . I 6 HOH A 106 1410 176 HOH HOH . I 6 HOH A 107 1411 184 HOH HOH . I 6 HOH A 108 1412 185 HOH HOH . I 6 HOH A 109 1413 187 HOH HOH . I 6 HOH A 110 1414 188 HOH HOH . I 6 HOH A 111 1415 189 HOH HOH . I 6 HOH A 112 1416 190 HOH HOH . I 6 HOH A 113 1417 191 HOH HOH . I 6 HOH A 114 1418 192 HOH HOH . I 6 HOH A 115 1419 196 HOH HOH . I 6 HOH A 116 1420 198 HOH HOH . I 6 HOH A 117 1421 202 HOH HOH . I 6 HOH A 118 1422 206 HOH HOH . I 6 HOH A 119 1423 207 HOH HOH . I 6 HOH A 120 1424 208 HOH HOH . I 6 HOH A 121 1425 212 HOH HOH . I 6 HOH A 122 1426 214 HOH HOH . I 6 HOH A 123 1427 215 HOH HOH . I 6 HOH A 124 1428 220 HOH HOH . I 6 HOH A 125 1429 222 HOH HOH . I 6 HOH A 126 1430 224 HOH HOH . I 6 HOH A 127 1431 227 HOH HOH . I 6 HOH A 128 1432 229 HOH HOH . I 6 HOH A 129 1433 230 HOH HOH . I 6 HOH A 130 1434 231 HOH HOH . I 6 HOH A 131 1435 232 HOH HOH . I 6 HOH A 132 1436 235 HOH HOH . I 6 HOH A 133 1437 236 HOH HOH . I 6 HOH A 134 1438 238 HOH HOH . I 6 HOH A 135 1439 240 HOH HOH . I 6 HOH A 136 1440 241 HOH HOH . I 6 HOH A 137 1441 242 HOH HOH . I 6 HOH A 138 1442 243 HOH HOH . I 6 HOH A 139 1443 246 HOH HOH . I 6 HOH A 140 1444 248 HOH HOH . I 6 HOH A 141 1445 249 HOH HOH . J 6 HOH B 1 1304 5 HOH HOH . J 6 HOH B 2 1305 6 HOH HOH . J 6 HOH B 3 1306 16 HOH HOH . J 6 HOH B 4 1307 18 HOH HOH . J 6 HOH B 5 1308 20 HOH HOH . J 6 HOH B 6 1309 21 HOH HOH . J 6 HOH B 7 1310 23 HOH HOH . J 6 HOH B 8 1311 25 HOH HOH . J 6 HOH B 9 1312 26 HOH HOH . J 6 HOH B 10 1313 27 HOH HOH . J 6 HOH B 11 1314 30 HOH HOH . J 6 HOH B 12 1315 35 HOH HOH . J 6 HOH B 13 1316 36 HOH HOH . J 6 HOH B 14 1317 38 HOH HOH . J 6 HOH B 15 1318 39 HOH HOH . J 6 HOH B 16 1319 40 HOH HOH . J 6 HOH B 17 1320 41 HOH HOH . J 6 HOH B 18 1321 43 HOH HOH . J 6 HOH B 19 1322 44 HOH HOH . J 6 HOH B 20 1323 59 HOH HOH . J 6 HOH B 21 1324 61 HOH HOH . J 6 HOH B 22 1325 62 HOH HOH . J 6 HOH B 23 1326 64 HOH HOH . J 6 HOH B 24 1327 66 HOH HOH . J 6 HOH B 25 1328 67 HOH HOH . J 6 HOH B 26 1329 70 HOH HOH . J 6 HOH B 27 1330 71 HOH HOH . J 6 HOH B 28 1331 72 HOH HOH . J 6 HOH B 29 1332 73 HOH HOH . J 6 HOH B 30 1333 74 HOH HOH . J 6 HOH B 31 1334 76 HOH HOH . J 6 HOH B 32 1335 78 HOH HOH . J 6 HOH B 33 1336 79 HOH HOH . J 6 HOH B 34 1337 81 HOH HOH . J 6 HOH B 35 1338 82 HOH HOH . J 6 HOH B 36 1339 84 HOH HOH . J 6 HOH B 37 1340 85 HOH HOH . J 6 HOH B 38 1341 86 HOH HOH . J 6 HOH B 39 1342 95 HOH HOH . J 6 HOH B 40 1343 98 HOH HOH . J 6 HOH B 41 1344 100 HOH HOH . J 6 HOH B 42 1345 102 HOH HOH . J 6 HOH B 43 1346 104 HOH HOH . J 6 HOH B 44 1347 108 HOH HOH . J 6 HOH B 45 1348 115 HOH HOH . J 6 HOH B 46 1349 116 HOH HOH . J 6 HOH B 47 1350 118 HOH HOH . J 6 HOH B 48 1351 119 HOH HOH . J 6 HOH B 49 1352 120 HOH HOH . J 6 HOH B 50 1353 122 HOH HOH . J 6 HOH B 51 1354 123 HOH HOH . J 6 HOH B 52 1355 124 HOH HOH . J 6 HOH B 53 1356 128 HOH HOH . J 6 HOH B 54 1357 130 HOH HOH . J 6 HOH B 55 1358 135 HOH HOH . J 6 HOH B 56 1359 136 HOH HOH . J 6 HOH B 57 1360 138 HOH HOH . J 6 HOH B 58 1361 141 HOH HOH . J 6 HOH B 59 1362 142 HOH HOH . J 6 HOH B 60 1363 143 HOH HOH . J 6 HOH B 61 1364 146 HOH HOH . J 6 HOH B 62 1365 150 HOH HOH . J 6 HOH B 63 1366 151 HOH HOH . J 6 HOH B 64 1367 157 HOH HOH . J 6 HOH B 65 1368 158 HOH HOH . J 6 HOH B 66 1369 160 HOH HOH . J 6 HOH B 67 1370 163 HOH HOH . J 6 HOH B 68 1371 165 HOH HOH . J 6 HOH B 69 1372 170 HOH HOH . J 6 HOH B 70 1373 175 HOH HOH . J 6 HOH B 71 1374 177 HOH HOH . J 6 HOH B 72 1375 178 HOH HOH . J 6 HOH B 73 1376 179 HOH HOH . J 6 HOH B 74 1377 180 HOH HOH . J 6 HOH B 75 1378 181 HOH HOH . J 6 HOH B 76 1379 182 HOH HOH . J 6 HOH B 77 1380 183 HOH HOH . J 6 HOH B 78 1381 186 HOH HOH . J 6 HOH B 79 1382 193 HOH HOH . J 6 HOH B 80 1383 194 HOH HOH . J 6 HOH B 81 1384 195 HOH HOH . J 6 HOH B 82 1385 197 HOH HOH . J 6 HOH B 83 1386 199 HOH HOH . J 6 HOH B 84 1387 200 HOH HOH . J 6 HOH B 85 1388 201 HOH HOH . J 6 HOH B 86 1389 203 HOH HOH . J 6 HOH B 87 1390 204 HOH HOH . J 6 HOH B 88 1391 205 HOH HOH . J 6 HOH B 89 1392 209 HOH HOH . J 6 HOH B 90 1393 210 HOH HOH . J 6 HOH B 91 1394 211 HOH HOH . J 6 HOH B 92 1395 213 HOH HOH . J 6 HOH B 93 1396 216 HOH HOH . J 6 HOH B 94 1397 217 HOH HOH . J 6 HOH B 95 1398 218 HOH HOH . J 6 HOH B 96 1399 219 HOH HOH . J 6 HOH B 97 1400 221 HOH HOH . J 6 HOH B 98 1401 223 HOH HOH . J 6 HOH B 99 1402 225 HOH HOH . J 6 HOH B 100 1403 226 HOH HOH . J 6 HOH B 101 1404 228 HOH HOH . J 6 HOH B 102 1405 233 HOH HOH . J 6 HOH B 103 1406 234 HOH HOH . J 6 HOH B 104 1407 237 HOH HOH . J 6 HOH B 105 1408 239 HOH HOH . J 6 HOH B 106 1409 244 HOH HOH . J 6 HOH B 107 1410 245 HOH HOH . J 6 HOH B 108 1411 247 HOH HOH . J 6 HOH B 109 1412 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 14.728 8.709 54.674 1 39.77 ? C1 GOL 1301 A 1 HETATM 2 O O1 GOL . . . E 4 14.583 10.098 54.456 1 29.99 ? O1 GOL 1301 A 1 HETATM 3 C C2 GOL . . . E 4 15.287 8.419 56.065 1 53.03 ? C2 GOL 1301 A 1 HETATM 4 O O2 GOL . . . E 4 16.709 8.464 56.045 1 49.28 ? O2 GOL 1301 A 1 HETATM 5 C C3 GOL . . . E 4 14.768 7.068 56.543 1 53.72 ? C3 GOL 1301 A 1 HETATM 6 O O3 GOL . . . E 4 15.197 6.756 57.866 1 61.38 ? O3 GOL 1301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #