data_1UMA # _model_server_result.job_id u70lcVsljPjaFQCyKiZ2gw _model_server_result.datetime_utc '2024-12-18 01:56:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1UMA # _exptl.entry_id 1UMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.49 _cell.angle_gamma 90 _cell.entry_id 1UMA _cell.length_a 71.15 _cell.length_b 71.9 _cell.length_c 72.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 B OG SER 205 H SER 195 1_555 F C12 IN2 . H IN2 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale3 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 269 n n C1 O1 NAG sing 270 n n C1 O5 NAG sing 271 n n C1 H1 NAG sing 272 n n C2 C3 NAG sing 273 n n C2 N2 NAG sing 274 n n C2 H2 NAG sing 275 n n C3 C4 NAG sing 276 n n C3 O3 NAG sing 277 n n C3 H3 NAG sing 278 n n C4 C5 NAG sing 279 n n C4 O4 NAG sing 280 n n C4 H4 NAG sing 281 n n C5 C6 NAG sing 282 n n C5 O5 NAG sing 283 n n C5 H5 NAG sing 284 n n C6 O6 NAG sing 285 n n C6 H61 NAG sing 286 n n C6 H62 NAG sing 287 n n C7 C8 NAG sing 288 n n C7 N2 NAG sing 289 n n C7 O7 NAG doub 290 n n C8 H81 NAG sing 291 n n C8 H82 NAG sing 292 n n C8 H83 NAG sing 293 n n N2 HN2 NAG sing 294 n n O1 HO1 NAG sing 295 n n O3 HO3 NAG sing 296 n n O4 HO4 NAG sing 297 n n O6 HO6 NAG sing 298 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1UMA _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002602 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 IN2 H 1 500 500 IN2 IN2 . F 5 IN2 H 1 600 600 IN2 IN2 . G 6 HOH L 1 432 432 HOH HOH . G 6 HOH L 2 439 439 HOH HOH . G 6 HOH L 3 440 440 HOH HOH . G 6 HOH L 4 449 449 HOH HOH . G 6 HOH L 5 452 452 HOH HOH . G 6 HOH L 6 465 465 HOH HOH . G 6 HOH L 7 468 468 HOH HOH . G 6 HOH L 8 470 470 HOH HOH . G 6 HOH L 9 474 474 HOH HOH . G 6 HOH L 10 485 485 HOH HOH . G 6 HOH L 11 511 511 HOH HOH . G 6 HOH L 12 514 514 HOH HOH . G 6 HOH L 13 517 517 HOH HOH . G 6 HOH L 14 534 534 HOH HOH . G 6 HOH L 15 540 540 HOH HOH . G 6 HOH L 16 557 557 HOH HOH . G 6 HOH L 17 573 573 HOH HOH . G 6 HOH L 18 590 590 HOH HOH . G 6 HOH L 19 599 599 HOH HOH . G 6 HOH L 20 602 602 HOH HOH . G 6 HOH L 21 625 625 HOH HOH . H 6 HOH H 1 601 401 HOH HOH . H 6 HOH H 2 602 402 HOH HOH . H 6 HOH H 3 603 403 HOH HOH . H 6 HOH H 4 604 404 HOH HOH . H 6 HOH H 5 605 405 HOH HOH . H 6 HOH H 6 606 406 HOH HOH . H 6 HOH H 7 607 407 HOH HOH . H 6 HOH H 8 608 408 HOH HOH . H 6 HOH H 9 609 409 HOH HOH . H 6 HOH H 10 610 410 HOH HOH . H 6 HOH H 11 611 411 HOH HOH . H 6 HOH H 12 612 412 HOH HOH . H 6 HOH H 13 613 413 HOH HOH . H 6 HOH H 14 614 414 HOH HOH . H 6 HOH H 15 615 415 HOH HOH . H 6 HOH H 16 616 416 HOH HOH . H 6 HOH H 17 617 417 HOH HOH . H 6 HOH H 18 618 418 HOH HOH . H 6 HOH H 19 619 419 HOH HOH . H 6 HOH H 20 620 420 HOH HOH . H 6 HOH H 21 621 421 HOH HOH . H 6 HOH H 22 622 422 HOH HOH . H 6 HOH H 23 623 423 HOH HOH . H 6 HOH H 24 624 424 HOH HOH . H 6 HOH H 25 625 425 HOH HOH . H 6 HOH H 26 626 426 HOH HOH . H 6 HOH H 27 627 427 HOH HOH . H 6 HOH H 28 628 428 HOH HOH . H 6 HOH H 29 629 429 HOH HOH . H 6 HOH H 30 630 430 HOH HOH . H 6 HOH H 31 631 431 HOH HOH . H 6 HOH H 32 632 433 HOH HOH . H 6 HOH H 33 633 435 HOH HOH . H 6 HOH H 34 634 436 HOH HOH . H 6 HOH H 35 635 437 HOH HOH . H 6 HOH H 36 636 438 HOH HOH . H 6 HOH H 37 637 441 HOH HOH . H 6 HOH H 38 638 442 HOH HOH . H 6 HOH H 39 639 443 HOH HOH . H 6 HOH H 40 640 444 HOH HOH . H 6 HOH H 41 641 445 HOH HOH . H 6 HOH H 42 642 446 HOH HOH . H 6 HOH H 43 643 447 HOH HOH . H 6 HOH H 44 644 450 HOH HOH . H 6 HOH H 45 645 451 HOH HOH . H 6 HOH H 46 646 454 HOH HOH . H 6 HOH H 47 647 455 HOH HOH . H 6 HOH H 48 648 456 HOH HOH . H 6 HOH H 49 649 457 HOH HOH . H 6 HOH H 50 650 458 HOH HOH . H 6 HOH H 51 651 459 HOH HOH . H 6 HOH H 52 652 460 HOH HOH . H 6 HOH H 53 653 461 HOH HOH . H 6 HOH H 54 654 462 HOH HOH . H 6 HOH H 55 655 466 HOH HOH . H 6 HOH H 56 656 467 HOH HOH . H 6 HOH H 57 657 469 HOH HOH . H 6 HOH H 58 658 471 HOH HOH . H 6 HOH H 59 659 472 HOH HOH . H 6 HOH H 60 660 473 HOH HOH . H 6 HOH H 61 661 475 HOH HOH . H 6 HOH H 62 662 476 HOH HOH . H 6 HOH H 63 663 479 HOH HOH . H 6 HOH H 64 664 480 HOH HOH . H 6 HOH H 65 665 481 HOH HOH . H 6 HOH H 66 666 483 HOH HOH . H 6 HOH H 67 667 484 HOH HOH . H 6 HOH H 68 668 486 HOH HOH . H 6 HOH H 69 669 487 HOH HOH . H 6 HOH H 70 670 488 HOH HOH . H 6 HOH H 71 671 489 HOH HOH . H 6 HOH H 72 672 490 HOH HOH . H 6 HOH H 73 673 491 HOH HOH . H 6 HOH H 74 674 492 HOH HOH . H 6 HOH H 75 675 493 HOH HOH . H 6 HOH H 76 676 494 HOH HOH . H 6 HOH H 77 677 495 HOH HOH . H 6 HOH H 78 678 496 HOH HOH . H 6 HOH H 79 679 497 HOH HOH . H 6 HOH H 80 680 498 HOH HOH . H 6 HOH H 81 681 500 HOH HOH . H 6 HOH H 82 682 501 HOH HOH . H 6 HOH H 83 683 502 HOH HOH . H 6 HOH H 84 684 503 HOH HOH . H 6 HOH H 85 685 504 HOH HOH . H 6 HOH H 86 686 505 HOH HOH . H 6 HOH H 87 687 507 HOH HOH . H 6 HOH H 88 688 508 HOH HOH . H 6 HOH H 89 689 509 HOH HOH . H 6 HOH H 90 690 512 HOH HOH . H 6 HOH H 91 691 515 HOH HOH . H 6 HOH H 92 692 516 HOH HOH . H 6 HOH H 93 693 520 HOH HOH . H 6 HOH H 94 694 521 HOH HOH . H 6 HOH H 95 695 522 HOH HOH . H 6 HOH H 96 696 523 HOH HOH . H 6 HOH H 97 697 525 HOH HOH . H 6 HOH H 98 698 526 HOH HOH . H 6 HOH H 99 699 527 HOH HOH . H 6 HOH H 100 700 528 HOH HOH . H 6 HOH H 101 701 529 HOH HOH . H 6 HOH H 102 702 530 HOH HOH . H 6 HOH H 103 703 531 HOH HOH . H 6 HOH H 104 704 532 HOH HOH . H 6 HOH H 105 705 536 HOH HOH . H 6 HOH H 106 706 538 HOH HOH . H 6 HOH H 107 707 539 HOH HOH . H 6 HOH H 108 708 541 HOH HOH . H 6 HOH H 109 709 542 HOH HOH . H 6 HOH H 110 710 544 HOH HOH . H 6 HOH H 111 711 545 HOH HOH . H 6 HOH H 112 712 546 HOH HOH . H 6 HOH H 113 713 547 HOH HOH . H 6 HOH H 114 714 548 HOH HOH . H 6 HOH H 115 715 549 HOH HOH . H 6 HOH H 116 716 550 HOH HOH . H 6 HOH H 117 717 551 HOH HOH . H 6 HOH H 118 718 553 HOH HOH . H 6 HOH H 119 719 554 HOH HOH . H 6 HOH H 120 720 558 HOH HOH . H 6 HOH H 121 721 559 HOH HOH . H 6 HOH H 122 722 562 HOH HOH . H 6 HOH H 123 723 564 HOH HOH . H 6 HOH H 124 724 568 HOH HOH . H 6 HOH H 125 725 572 HOH HOH . H 6 HOH H 126 726 574 HOH HOH . H 6 HOH H 127 727 577 HOH HOH . H 6 HOH H 128 728 578 HOH HOH . H 6 HOH H 129 729 579 HOH HOH . H 6 HOH H 130 730 580 HOH HOH . H 6 HOH H 131 731 584 HOH HOH . H 6 HOH H 132 732 586 HOH HOH . H 6 HOH H 133 733 587 HOH HOH . H 6 HOH H 134 734 589 HOH HOH . H 6 HOH H 135 735 593 HOH HOH . H 6 HOH H 136 736 596 HOH HOH . H 6 HOH H 137 737 597 HOH HOH . H 6 HOH H 138 738 598 HOH HOH . H 6 HOH H 139 739 601 HOH HOH . H 6 HOH H 140 740 603 HOH HOH . H 6 HOH H 141 741 609 HOH HOH . H 6 HOH H 142 742 611 HOH HOH . H 6 HOH H 143 743 612 HOH HOH . H 6 HOH H 144 744 613 HOH HOH . H 6 HOH H 145 745 614 HOH HOH . H 6 HOH H 146 746 615 HOH HOH . H 6 HOH H 147 747 616 HOH HOH . H 6 HOH H 148 748 617 HOH HOH . H 6 HOH H 149 749 618 HOH HOH . H 6 HOH H 150 750 619 HOH HOH . H 6 HOH H 151 751 620 HOH HOH . H 6 HOH H 152 752 621 HOH HOH . H 6 HOH H 153 753 622 HOH HOH . H 6 HOH H 154 754 623 HOH HOH . H 6 HOH H 155 755 624 HOH HOH . H 6 HOH H 156 756 626 HOH HOH . H 6 HOH H 157 757 627 HOH HOH . I 6 HOH I 1 499 499 HOH HOH . I 6 HOH I 2 535 535 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 32.074 -8.453 10.861 1 63.34 ? C1 NAG 400 H 1 HETATM 2 C C2 NAG . . . D 4 33.245 -9.056 11.643 1 56.58 ? C2 NAG 400 H 1 HETATM 3 C C3 NAG . . . D 4 34.375 -8.046 11.66 1 72.52 ? C3 NAG 400 H 1 HETATM 4 C C4 NAG . . . D 4 34.766 -7.688 10.256 1 56.68 ? C4 NAG 400 H 1 HETATM 5 C C5 NAG . . . D 4 33.544 -7.161 9.483 1 80 ? C5 NAG 400 H 1 HETATM 6 C C6 NAG . . . D 4 33.921 -6.917 8.016 1 80 ? C6 NAG 400 H 1 HETATM 7 C C7 NAG . . . D 4 33.444 -10.486 13.548 1 61.69 ? C7 NAG 400 H 1 HETATM 8 C C8 NAG . . . D 4 33.794 -11.506 12.492 1 76.84 ? C8 NAG 400 H 1 HETATM 9 N N2 NAG . . . D 4 32.93 -9.332 13.047 1 80 ? N2 NAG 400 H 1 HETATM 10 O O3 NAG . . . D 4 35.621 -8.667 12.052 1 80 ? O3 NAG 400 H 1 HETATM 11 O O4 NAG . . . D 4 35.792 -6.641 10.365 1 80 ? O4 NAG 400 H 1 HETATM 12 O O5 NAG . . . D 4 32.504 -8.178 9.508 1 48.16 ? O5 NAG 400 H 1 HETATM 13 O O6 NAG . . . D 4 32.852 -6.344 7.318 1 76.69 ? O6 NAG 400 H 1 HETATM 14 O O7 NAG . . . D 4 33.367 -10.695 14.76 1 69.95 ? O7 NAG 400 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #