data_1UMA # _model_server_result.job_id q759I1_6FciF_qL-SgEzTQ _model_server_result.datetime_utc '2024-12-18 01:44:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1UMA # _exptl.entry_id 1UMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.254 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-DIMETHYLCARBAMOYL-ALPHA-AZALYSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.49 _cell.angle_gamma 90 _cell.entry_id 1UMA _cell.length_a 71.15 _cell.length_b 71.9 _cell.length_c 72.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale2 B OG SER 205 H SER 195 1_555 F C12 IN2 . H IN2 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale3 C C GLU 8 I GLU 62 1_555 C N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TYS 9 I TYS 63 1_555 C N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? # _chem_comp.formula 'C8 H18 N4 O3' _chem_comp.formula_weight 218.254 _chem_comp.id IN2 _chem_comp.mon_nstd_flag . _chem_comp.name N,N-DIMETHYLCARBAMOYL-ALPHA-AZALYSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IN2 sing 173 n n N1 HN11 IN2 sing 174 n n N1 HN12 IN2 sing 175 n n C2 C3 IN2 sing 176 n n C2 H21 IN2 sing 177 n n C2 H22 IN2 sing 178 n n C3 C4 IN2 sing 179 n n C3 H31 IN2 sing 180 n n C3 H32 IN2 sing 181 n n C4 C5 IN2 sing 182 n n C4 H41 IN2 sing 183 n n C4 H42 IN2 sing 184 n n C5 N6 IN2 sing 185 n n C5 H51 IN2 sing 186 n n C5 H52 IN2 sing 187 n n N6 N7 IN2 sing 188 n n N6 C12 IN2 sing 189 n n N7 C8 IN2 sing 190 n n N7 HN7 IN2 sing 191 n n C8 O8 IN2 doub 192 n n C8 N9 IN2 sing 193 n n N9 C10 IN2 sing 194 n n N9 C11 IN2 sing 195 n n C10 H101 IN2 sing 196 n n C10 H102 IN2 sing 197 n n C10 H103 IN2 sing 198 n n C11 H111 IN2 sing 199 n n C11 H112 IN2 sing 200 n n C11 H113 IN2 sing 201 n n C12 O1 IN2 doub 202 n n C12 O2 IN2 sing 203 n n O2 HO2 IN2 sing 204 n n # _atom_sites.entry_id 1UMA _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002602 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 IN2 H 1 500 500 IN2 IN2 . F 5 IN2 H 1 600 600 IN2 IN2 . G 6 HOH L 1 432 432 HOH HOH . G 6 HOH L 2 439 439 HOH HOH . G 6 HOH L 3 440 440 HOH HOH . G 6 HOH L 4 449 449 HOH HOH . G 6 HOH L 5 452 452 HOH HOH . G 6 HOH L 6 465 465 HOH HOH . G 6 HOH L 7 468 468 HOH HOH . G 6 HOH L 8 470 470 HOH HOH . G 6 HOH L 9 474 474 HOH HOH . G 6 HOH L 10 485 485 HOH HOH . G 6 HOH L 11 511 511 HOH HOH . G 6 HOH L 12 514 514 HOH HOH . G 6 HOH L 13 517 517 HOH HOH . G 6 HOH L 14 534 534 HOH HOH . G 6 HOH L 15 540 540 HOH HOH . G 6 HOH L 16 557 557 HOH HOH . G 6 HOH L 17 573 573 HOH HOH . G 6 HOH L 18 590 590 HOH HOH . G 6 HOH L 19 599 599 HOH HOH . G 6 HOH L 20 602 602 HOH HOH . G 6 HOH L 21 625 625 HOH HOH . H 6 HOH H 1 601 401 HOH HOH . H 6 HOH H 2 602 402 HOH HOH . H 6 HOH H 3 603 403 HOH HOH . H 6 HOH H 4 604 404 HOH HOH . H 6 HOH H 5 605 405 HOH HOH . H 6 HOH H 6 606 406 HOH HOH . H 6 HOH H 7 607 407 HOH HOH . H 6 HOH H 8 608 408 HOH HOH . H 6 HOH H 9 609 409 HOH HOH . H 6 HOH H 10 610 410 HOH HOH . H 6 HOH H 11 611 411 HOH HOH . H 6 HOH H 12 612 412 HOH HOH . H 6 HOH H 13 613 413 HOH HOH . H 6 HOH H 14 614 414 HOH HOH . H 6 HOH H 15 615 415 HOH HOH . H 6 HOH H 16 616 416 HOH HOH . H 6 HOH H 17 617 417 HOH HOH . H 6 HOH H 18 618 418 HOH HOH . H 6 HOH H 19 619 419 HOH HOH . H 6 HOH H 20 620 420 HOH HOH . H 6 HOH H 21 621 421 HOH HOH . H 6 HOH H 22 622 422 HOH HOH . H 6 HOH H 23 623 423 HOH HOH . H 6 HOH H 24 624 424 HOH HOH . H 6 HOH H 25 625 425 HOH HOH . H 6 HOH H 26 626 426 HOH HOH . H 6 HOH H 27 627 427 HOH HOH . H 6 HOH H 28 628 428 HOH HOH . H 6 HOH H 29 629 429 HOH HOH . H 6 HOH H 30 630 430 HOH HOH . H 6 HOH H 31 631 431 HOH HOH . H 6 HOH H 32 632 433 HOH HOH . H 6 HOH H 33 633 435 HOH HOH . H 6 HOH H 34 634 436 HOH HOH . H 6 HOH H 35 635 437 HOH HOH . H 6 HOH H 36 636 438 HOH HOH . H 6 HOH H 37 637 441 HOH HOH . H 6 HOH H 38 638 442 HOH HOH . H 6 HOH H 39 639 443 HOH HOH . H 6 HOH H 40 640 444 HOH HOH . H 6 HOH H 41 641 445 HOH HOH . H 6 HOH H 42 642 446 HOH HOH . H 6 HOH H 43 643 447 HOH HOH . H 6 HOH H 44 644 450 HOH HOH . H 6 HOH H 45 645 451 HOH HOH . H 6 HOH H 46 646 454 HOH HOH . H 6 HOH H 47 647 455 HOH HOH . H 6 HOH H 48 648 456 HOH HOH . H 6 HOH H 49 649 457 HOH HOH . H 6 HOH H 50 650 458 HOH HOH . H 6 HOH H 51 651 459 HOH HOH . H 6 HOH H 52 652 460 HOH HOH . H 6 HOH H 53 653 461 HOH HOH . H 6 HOH H 54 654 462 HOH HOH . H 6 HOH H 55 655 466 HOH HOH . H 6 HOH H 56 656 467 HOH HOH . H 6 HOH H 57 657 469 HOH HOH . H 6 HOH H 58 658 471 HOH HOH . H 6 HOH H 59 659 472 HOH HOH . H 6 HOH H 60 660 473 HOH HOH . H 6 HOH H 61 661 475 HOH HOH . H 6 HOH H 62 662 476 HOH HOH . H 6 HOH H 63 663 479 HOH HOH . H 6 HOH H 64 664 480 HOH HOH . H 6 HOH H 65 665 481 HOH HOH . H 6 HOH H 66 666 483 HOH HOH . H 6 HOH H 67 667 484 HOH HOH . H 6 HOH H 68 668 486 HOH HOH . H 6 HOH H 69 669 487 HOH HOH . H 6 HOH H 70 670 488 HOH HOH . H 6 HOH H 71 671 489 HOH HOH . H 6 HOH H 72 672 490 HOH HOH . H 6 HOH H 73 673 491 HOH HOH . H 6 HOH H 74 674 492 HOH HOH . H 6 HOH H 75 675 493 HOH HOH . H 6 HOH H 76 676 494 HOH HOH . H 6 HOH H 77 677 495 HOH HOH . H 6 HOH H 78 678 496 HOH HOH . H 6 HOH H 79 679 497 HOH HOH . H 6 HOH H 80 680 498 HOH HOH . H 6 HOH H 81 681 500 HOH HOH . H 6 HOH H 82 682 501 HOH HOH . H 6 HOH H 83 683 502 HOH HOH . H 6 HOH H 84 684 503 HOH HOH . H 6 HOH H 85 685 504 HOH HOH . H 6 HOH H 86 686 505 HOH HOH . H 6 HOH H 87 687 507 HOH HOH . H 6 HOH H 88 688 508 HOH HOH . H 6 HOH H 89 689 509 HOH HOH . H 6 HOH H 90 690 512 HOH HOH . H 6 HOH H 91 691 515 HOH HOH . H 6 HOH H 92 692 516 HOH HOH . H 6 HOH H 93 693 520 HOH HOH . H 6 HOH H 94 694 521 HOH HOH . H 6 HOH H 95 695 522 HOH HOH . H 6 HOH H 96 696 523 HOH HOH . H 6 HOH H 97 697 525 HOH HOH . H 6 HOH H 98 698 526 HOH HOH . H 6 HOH H 99 699 527 HOH HOH . H 6 HOH H 100 700 528 HOH HOH . H 6 HOH H 101 701 529 HOH HOH . H 6 HOH H 102 702 530 HOH HOH . H 6 HOH H 103 703 531 HOH HOH . H 6 HOH H 104 704 532 HOH HOH . H 6 HOH H 105 705 536 HOH HOH . H 6 HOH H 106 706 538 HOH HOH . H 6 HOH H 107 707 539 HOH HOH . H 6 HOH H 108 708 541 HOH HOH . H 6 HOH H 109 709 542 HOH HOH . H 6 HOH H 110 710 544 HOH HOH . H 6 HOH H 111 711 545 HOH HOH . H 6 HOH H 112 712 546 HOH HOH . H 6 HOH H 113 713 547 HOH HOH . H 6 HOH H 114 714 548 HOH HOH . H 6 HOH H 115 715 549 HOH HOH . H 6 HOH H 116 716 550 HOH HOH . H 6 HOH H 117 717 551 HOH HOH . H 6 HOH H 118 718 553 HOH HOH . H 6 HOH H 119 719 554 HOH HOH . H 6 HOH H 120 720 558 HOH HOH . H 6 HOH H 121 721 559 HOH HOH . H 6 HOH H 122 722 562 HOH HOH . H 6 HOH H 123 723 564 HOH HOH . H 6 HOH H 124 724 568 HOH HOH . H 6 HOH H 125 725 572 HOH HOH . H 6 HOH H 126 726 574 HOH HOH . H 6 HOH H 127 727 577 HOH HOH . H 6 HOH H 128 728 578 HOH HOH . H 6 HOH H 129 729 579 HOH HOH . H 6 HOH H 130 730 580 HOH HOH . H 6 HOH H 131 731 584 HOH HOH . H 6 HOH H 132 732 586 HOH HOH . H 6 HOH H 133 733 587 HOH HOH . H 6 HOH H 134 734 589 HOH HOH . H 6 HOH H 135 735 593 HOH HOH . H 6 HOH H 136 736 596 HOH HOH . H 6 HOH H 137 737 597 HOH HOH . H 6 HOH H 138 738 598 HOH HOH . H 6 HOH H 139 739 601 HOH HOH . H 6 HOH H 140 740 603 HOH HOH . H 6 HOH H 141 741 609 HOH HOH . H 6 HOH H 142 742 611 HOH HOH . H 6 HOH H 143 743 612 HOH HOH . H 6 HOH H 144 744 613 HOH HOH . H 6 HOH H 145 745 614 HOH HOH . H 6 HOH H 146 746 615 HOH HOH . H 6 HOH H 147 747 616 HOH HOH . H 6 HOH H 148 748 617 HOH HOH . H 6 HOH H 149 749 618 HOH HOH . H 6 HOH H 150 750 619 HOH HOH . H 6 HOH H 151 751 620 HOH HOH . H 6 HOH H 152 752 621 HOH HOH . H 6 HOH H 153 753 622 HOH HOH . H 6 HOH H 154 754 623 HOH HOH . H 6 HOH H 155 755 624 HOH HOH . H 6 HOH H 156 756 626 HOH HOH . H 6 HOH H 157 757 627 HOH HOH . I 6 HOH I 1 499 499 HOH HOH . I 6 HOH I 2 535 535 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IN2 . . . F 5 10.438 -12.733 23.656 1 23.29 ? N1 IN2 600 H 1 HETATM 2 C C2 IN2 . . . F 5 11.561 -12.781 22.714 1 20.75 ? C2 IN2 600 H 1 HETATM 3 C C3 IN2 . . . F 5 11.929 -11.438 22.136 1 33.23 ? C3 IN2 600 H 1 HETATM 4 C C4 IN2 . . . F 5 13.283 -11.432 21.468 1 26.01 ? C4 IN2 600 H 1 HETATM 5 C C5 IN2 . . . F 5 13.25 -11.502 19.949 1 31.41 ? C5 IN2 600 H 1 HETATM 6 N N6 IN2 . . . F 5 14.593 -11.621 19.419 1 38.45 ? N6 IN2 600 H 1 HETATM 7 N N7 IN2 . . . F 5 15.157 -12.908 19.312 1 36.69 ? N7 IN2 600 H 1 HETATM 8 C C8 IN2 . . . F 5 15.171 -13.496 18.122 1 80 ? C8 IN2 600 H 1 HETATM 9 O O8 IN2 . . . F 5 14.357 -13.186 17.264 1 49.36 ? O8 IN2 600 H 1 HETATM 10 N N9 IN2 . . . F 5 16.04 -14.473 17.961 1 61.12 ? N9 IN2 600 H 1 HETATM 11 C C10 IN2 . . . F 5 16.958 -14.774 19.028 1 55.02 ? C10 IN2 600 H 1 HETATM 12 C C11 IN2 . . . F 5 16 -15.261 16.745 1 36.37 ? C11 IN2 600 H 1 HETATM 13 C C12 IN2 . . . F 5 15.18 -10.557 18.869 1 51.69 ? C12 IN2 600 H 1 HETATM 14 O O1 IN2 . . . F 5 16.205 -10.685 18.241 1 31.66 ? O1 IN2 600 H 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #