data_1UMJ
#
_model_server_result.job_id            oGOfs1SBqiYo5EmSl74kjg 
_model_server_result.datetime_utc      '2025-07-05 09:16:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1umj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    1UMJ 
#
_exptl.entry_id    1UMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.07 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANIDINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1UMJ 
_cell.length_a            53.21 
_cell.length_b            53.21 
_cell.length_c            59.665 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS trimeric 3 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PQS trimeric 3 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2,3 
B,E,F,H 2 1 
B,E,F,H 3 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 53.21 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 26.605 46.081212 0 
4 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 106.42 0 0 
5 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 53.21 92.162423 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C H5 N3' 
_chem_comp.formula_weight    59.07 
_chem_comp.id                GAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N1 GAI doub 83 n n 
C N2 GAI sing 84 n n 
C N3 GAI sing 85 n n 
N1 HN1 GAI sing 86 n n 
N2 HN21 GAI sing 87 n n 
N2 HN22 GAI sing 88 n n 
N3 HN31 GAI sing 89 n n 
N3 HN32 GAI sing 90 n n 
#
_atom_sites.entry_id                     1UMJ 
_atom_sites.fract_transf_matrix[1][1]    0.018793 
_atom_sites.fract_transf_matrix[1][2]    0.01085 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021701 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GAI A 1 1001 1001 GAI GAI . 
D 2 GAI A 1 1002 1002 GAI GAI . 
E 2 GAI B 1 1003 1003 GAI GAI . 
F 2 GAI B 1 1004 1004 GAI GAI . 
G 3 HOH A 1 201 201 HOH HOH . 
G 3 HOH A 2 203 203 HOH HOH . 
G 3 HOH A 3 205 205 HOH HOH . 
G 3 HOH A 4 206 206 HOH HOH . 
G 3 HOH A 5 209 209 HOH HOH . 
G 3 HOH A 6 212 212 HOH HOH . 
G 3 HOH A 7 214 214 HOH HOH . 
G 3 HOH A 8 215 215 HOH HOH . 
G 3 HOH A 9 216 216 HOH HOH . 
G 3 HOH A 10 218 218 HOH HOH . 
G 3 HOH A 11 219 219 HOH HOH . 
G 3 HOH A 12 223 223 HOH HOH . 
G 3 HOH A 13 224 224 HOH HOH . 
G 3 HOH A 14 226 226 HOH HOH . 
G 3 HOH A 15 228 228 HOH HOH . 
G 3 HOH A 16 231 231 HOH HOH . 
G 3 HOH A 17 233 233 HOH HOH . 
G 3 HOH A 18 234 234 HOH HOH . 
G 3 HOH A 19 237 237 HOH HOH . 
G 3 HOH A 20 239 239 HOH HOH . 
G 3 HOH A 21 240 240 HOH HOH . 
G 3 HOH A 22 244 244 HOH HOH . 
G 3 HOH A 23 246 246 HOH HOH . 
G 3 HOH A 24 248 248 HOH HOH . 
G 3 HOH A 25 250 250 HOH HOH . 
G 3 HOH A 26 251 251 HOH HOH . 
G 3 HOH A 27 254 254 HOH HOH . 
G 3 HOH A 28 257 257 HOH HOH . 
G 3 HOH A 29 262 262 HOH HOH . 
G 3 HOH A 30 267 267 HOH HOH . 
G 3 HOH A 31 268 268 HOH HOH . 
G 3 HOH A 32 269 269 HOH HOH . 
G 3 HOH A 33 270 270 HOH HOH . 
G 3 HOH A 34 273 273 HOH HOH . 
G 3 HOH A 35 277 277 HOH HOH . 
G 3 HOH A 36 278 278 HOH HOH . 
G 3 HOH A 37 279 279 HOH HOH . 
G 3 HOH A 38 280 280 HOH HOH . 
G 3 HOH A 39 281 281 HOH HOH . 
G 3 HOH A 40 283 283 HOH HOH . 
G 3 HOH A 41 285 285 HOH HOH . 
G 3 HOH A 42 286 286 HOH HOH . 
G 3 HOH A 43 287 287 HOH HOH . 
G 3 HOH A 44 289 289 HOH HOH . 
G 3 HOH A 45 290 290 HOH HOH . 
G 3 HOH A 46 291 291 HOH HOH . 
G 3 HOH A 47 292 292 HOH HOH . 
G 3 HOH A 48 293 293 HOH HOH . 
G 3 HOH A 49 294 294 HOH HOH . 
G 3 HOH A 50 295 295 HOH HOH . 
G 3 HOH A 51 297 297 HOH HOH . 
G 3 HOH A 52 298 298 HOH HOH . 
G 3 HOH A 53 299 299 HOH HOH . 
G 3 HOH A 54 304 304 HOH HOH . 
G 3 HOH A 55 305 305 HOH HOH . 
G 3 HOH A 56 306 306 HOH HOH . 
G 3 HOH A 57 307 307 HOH HOH . 
G 3 HOH A 58 310 310 HOH HOH . 
G 3 HOH A 59 311 311 HOH HOH . 
G 3 HOH A 60 312 312 HOH HOH . 
G 3 HOH A 61 313 313 HOH HOH . 
G 3 HOH A 62 314 314 HOH HOH . 
G 3 HOH A 63 315 315 HOH HOH . 
G 3 HOH A 64 316 316 HOH HOH . 
G 3 HOH A 65 318 318 HOH HOH . 
G 3 HOH A 66 319 319 HOH HOH . 
G 3 HOH A 67 322 322 HOH HOH . 
G 3 HOH A 68 323 323 HOH HOH . 
G 3 HOH A 69 324 324 HOH HOH . 
G 3 HOH A 70 325 325 HOH HOH . 
H 3 HOH B 1 202 202 HOH HOH . 
H 3 HOH B 2 204 204 HOH HOH . 
H 3 HOH B 3 207 207 HOH HOH . 
H 3 HOH B 4 208 208 HOH HOH . 
H 3 HOH B 5 210 210 HOH HOH . 
H 3 HOH B 6 211 211 HOH HOH . 
H 3 HOH B 7 213 213 HOH HOH . 
H 3 HOH B 8 217 217 HOH HOH . 
H 3 HOH B 9 220 220 HOH HOH . 
H 3 HOH B 10 221 221 HOH HOH . 
H 3 HOH B 11 222 222 HOH HOH . 
H 3 HOH B 12 225 225 HOH HOH . 
H 3 HOH B 13 227 227 HOH HOH . 
H 3 HOH B 14 229 229 HOH HOH . 
H 3 HOH B 15 230 230 HOH HOH . 
H 3 HOH B 16 232 232 HOH HOH . 
H 3 HOH B 17 235 235 HOH HOH . 
H 3 HOH B 18 236 236 HOH HOH . 
H 3 HOH B 19 238 238 HOH HOH . 
H 3 HOH B 20 241 241 HOH HOH . 
H 3 HOH B 21 242 242 HOH HOH . 
H 3 HOH B 22 243 243 HOH HOH . 
H 3 HOH B 23 245 245 HOH HOH . 
H 3 HOH B 24 247 247 HOH HOH . 
H 3 HOH B 25 249 249 HOH HOH . 
H 3 HOH B 26 252 252 HOH HOH . 
H 3 HOH B 27 253 253 HOH HOH . 
H 3 HOH B 28 255 255 HOH HOH . 
H 3 HOH B 29 256 256 HOH HOH . 
H 3 HOH B 30 258 258 HOH HOH . 
H 3 HOH B 31 259 259 HOH HOH . 
H 3 HOH B 32 260 260 HOH HOH . 
H 3 HOH B 33 261 261 HOH HOH . 
H 3 HOH B 34 263 263 HOH HOH . 
H 3 HOH B 35 264 264 HOH HOH . 
H 3 HOH B 36 265 265 HOH HOH . 
H 3 HOH B 37 266 266 HOH HOH . 
H 3 HOH B 38 271 271 HOH HOH . 
H 3 HOH B 39 272 272 HOH HOH . 
H 3 HOH B 40 274 274 HOH HOH . 
H 3 HOH B 41 275 275 HOH HOH . 
H 3 HOH B 42 276 276 HOH HOH . 
H 3 HOH B 43 282 282 HOH HOH . 
H 3 HOH B 44 284 284 HOH HOH . 
H 3 HOH B 45 288 288 HOH HOH . 
H 3 HOH B 46 296 296 HOH HOH . 
H 3 HOH B 47 300 300 HOH HOH . 
H 3 HOH B 48 301 301 HOH HOH . 
H 3 HOH B 49 302 302 HOH HOH . 
H 3 HOH B 50 303 303 HOH HOH . 
H 3 HOH B 51 308 308 HOH HOH . 
H 3 HOH B 52 309 309 HOH HOH . 
H 3 HOH B 53 317 317 HOH HOH . 
H 3 HOH B 54 320 320 HOH HOH . 
H 3 HOH B 55 321 321 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C GAI . . . D 2 26.634 15.321 -11.43 0.33 29.01 ? C GAI 1002 A 1 
HETATM 2 N N1 GAI . . . D 2 26.21 16.577 -11.43 0.33 32.52 ? N1 GAI 1002 A 1 
HETATM 3 N N2 GAI . . . D 2 27.935 15.056 -11.43 0.33 32.87 ? N2 GAI 1002 A 1 
HETATM 4 N N3 GAI . . . D 2 25.751 14.332 -11.43 0.33 33.27 ? N3 GAI 1002 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#