data_1UMO
#
_model_server_result.job_id            h6KnNRyOn8K1XAlVwzKXIg 
_model_server_result.datetime_utc      '2024-12-26 22:57:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1umo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1172}' 
#
_entry.id    1UMO 
#
_exptl.entry_id    1UMO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1UMO 
_cell.length_a            46.617 
_cell.length_b            72.001 
_cell.length_c            98.334 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 81 A HIS 81 1_555 C FE HEM . A HEM 1172 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc2 A NE2 HIS 113 A HIS 113 1_555 C FE HEM . A HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc3 B NE2 HIS 81 B HIS 81 1_555 D FE HEM . B HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc4 B NE2 HIS 113 B HIS 113 1_555 D FE HEM . B HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1UMO 
_atom_sites.fract_transf_matrix[1][1]    0.021451 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1172 1172 HEM HEM . 
D 2 HEM B 1 1172 1172 HEM HEM . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 -6.821 4.676 53.405 1 33.4 ? CHA HEM 1172 A 1 
HETATM 2 C CHB HEM . . . C 2 -2.412 5.534 51.62 1 31.45 ? CHB HEM 1172 A 1 
HETATM 3 C CHC HEM . . . C 2 -3.195 2.369 48.023 1 29.99 ? CHC HEM 1172 A 1 
HETATM 4 C CHD HEM . . . C 2 -7.666 1.521 49.705 1 31.55 ? CHD HEM 1172 A 1 
HETATM 5 C C1A HEM . . . C 2 -5.524 5.138 53.307 1 33.74 ? C1A HEM 1172 A 1 
HETATM 6 C C2A HEM . . . C 2 -4.781 5.94 54.261 1 35.9 ? C2A HEM 1172 A 1 
HETATM 7 C C3A HEM . . . C 2 -3.568 6.182 53.738 1 34.06 ? C3A HEM 1172 A 1 
HETATM 8 C C4A HEM . . . C 2 -3.501 5.531 52.457 1 32.33 ? C4A HEM 1172 A 1 
HETATM 9 C CMA HEM . . . C 2 -2.407 7 54.364 1 31.85 ? CMA HEM 1172 A 1 
HETATM 10 C CAA HEM . . . C 2 -5.283 6.479 55.635 1 38.63 ? CAA HEM 1172 A 1 
HETATM 11 C CBA HEM . . . C 2 -4.693 5.673 56.798 1 41.17 ? CBA HEM 1172 A 1 
HETATM 12 C CGA HEM . . . C 2 -5.222 4.264 56.734 1 43.02 ? CGA HEM 1172 A 1 
HETATM 13 O O1A HEM . . . C 2 -6.451 4.139 56.583 1 44.94 ? O1A HEM 1172 A 1 
HETATM 14 O O2A HEM . . . C 2 -4.445 3.276 56.828 1 44.92 ? O2A HEM 1172 A 1 
HETATM 15 C C1B HEM . . . C 2 -2.224 4.751 50.518 1 28.96 ? C1B HEM 1172 A 1 
HETATM 16 C C2B HEM . . . C 2 -1.034 4.689 49.737 1 27.34 ? C2B HEM 1172 A 1 
HETATM 17 C C3B HEM . . . C 2 -1.223 3.805 48.742 1 29.16 ? C3B HEM 1172 A 1 
HETATM 18 C C4B HEM . . . C 2 -2.573 3.289 48.862 1 30.83 ? C4B HEM 1172 A 1 
HETATM 19 C CMB HEM . . . C 2 0.226 5.508 50.077 1 26.55 ? CMB HEM 1172 A 1 
HETATM 20 C CAB HEM . . . C 2 -0.226 3.379 47.63 1 31.08 ? CAB HEM 1172 A 1 
HETATM 21 C CBB HEM . . . C 2 0.67 4.241 47.119 1 32.01 ? CBB HEM 1172 A 1 
HETATM 22 C C1C HEM . . . C 2 -4.488 1.895 48.124 1 30.55 ? C1C HEM 1172 A 1 
HETATM 23 C C2C HEM . . . C 2 -5.184 1.005 47.206 1 30.96 ? C2C HEM 1172 A 1 
HETATM 24 C C3C HEM . . . C 2 -6.417 0.791 47.662 1 30.85 ? C3C HEM 1172 A 1 
HETATM 25 C C4C HEM . . . C 2 -6.547 1.508 48.901 1 31.75 ? C4C HEM 1172 A 1 
HETATM 26 C CMC HEM . . . C 2 -4.604 0.412 45.907 1 29.75 ? CMC HEM 1172 A 1 
HETATM 27 C CAC HEM . . . C 2 -7.5 -0.108 47.014 1 29.57 ? CAC HEM 1172 A 1 
HETATM 28 C CBC HEM . . . C 2 -8.553 0.436 46.443 1 28.62 ? CBC HEM 1172 A 1 
HETATM 29 C C1D HEM . . . C 2 -7.848 2.269 50.851 1 32.13 ? C1D HEM 1172 A 1 
HETATM 30 C C2D HEM . . . C 2 -9.055 2.266 51.644 1 32.26 ? C2D HEM 1172 A 1 
HETATM 31 C C3D HEM . . . C 2 -8.81 3.248 52.766 1 33.31 ? C3D HEM 1172 A 1 
HETATM 32 C C4D HEM . . . C 2 -7.457 3.761 52.582 1 33.76 ? C4D HEM 1172 A 1 
HETATM 33 C CMD HEM . . . C 2 -10.349 1.474 51.419 1 33.14 ? CMD HEM 1172 A 1 
HETATM 34 C CAD HEM . . . C 2 -9.831 3.575 53.855 1 33.51 ? CAD HEM 1172 A 1 
HETATM 35 C CBD HEM . . . C 2 -10.428 4.951 53.587 1 33.24 ? CBD HEM 1172 A 1 
HETATM 36 C CGD HEM . . . C 2 -11.284 5.349 54.749 1 33.77 ? CGD HEM 1172 A 1 
HETATM 37 O O1D HEM . . . C 2 -11.816 6.492 54.804 1 35.93 ? O1D HEM 1172 A 1 
HETATM 38 O O2D HEM . . . C 2 -11.449 4.491 55.645 1 37 ? O2D HEM 1172 A 1 
HETATM 39 N NA HEM . . . C 2 -4.701 4.931 52.231 1 32.84 ? NA HEM 1172 A 1 
HETATM 40 N NB HEM . . . C 2 -3.136 3.901 49.964 1 30.85 ? NB HEM 1172 A 1 
HETATM 41 N NC HEM . . . C 2 -5.352 2.158 49.142 1 31.89 ? NC HEM 1172 A 1 
HETATM 42 N ND HEM . . . C 2 -6.932 3.145 51.438 1 32.81 ? ND HEM 1172 A 1 
HETATM 43 FE FE HEM . . . C 2 -4.951 3.559 50.76 1 35.3 ? FE HEM 1172 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#