data_1UMX # _model_server_result.job_id io552VLnmglOxEzPFkDoXw _model_server_result.datetime_utc '2025-03-06 02:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1umx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1305}' # _entry.id 1UMX # _exptl.entry_id 1UMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UMX _cell.length_a 141.638 _cell.length_b 141.638 _cell.length_c 187.394 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 153 L HIS 153 1_555 F MG BCL . L BCL 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc2 B NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B NE2 HIS 190 L HIS 190 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc4 B NE2 HIS 230 L HIS 230 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 C NE2 HIS 182 M HIS 182 1_555 H MG BCL . M BCL 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 C NE2 HIS 202 M HIS 202 1_555 I MG BCL . M BCL 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 C NE2 HIS 219 M HIS 219 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 C OE1 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 C NE2 HIS 266 M HIS 266 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 465 n n N1 CM1 LDA sing 466 n n N1 CM2 LDA sing 467 n n N1 C1 LDA sing 468 n n CM1 HM11 LDA sing 469 n n CM1 HM12 LDA sing 470 n n CM1 HM13 LDA sing 471 n n CM2 HM21 LDA sing 472 n n CM2 HM22 LDA sing 473 n n CM2 HM23 LDA sing 474 n n C1 C2 LDA sing 475 n n C1 H11 LDA sing 476 n n C1 H12 LDA sing 477 n n C2 C3 LDA sing 478 n n C2 H21 LDA sing 479 n n C2 H22 LDA sing 480 n n C3 C4 LDA sing 481 n n C3 H31 LDA sing 482 n n C3 H32 LDA sing 483 n n C4 C5 LDA sing 484 n n C4 H41 LDA sing 485 n n C4 H42 LDA sing 486 n n C5 C6 LDA sing 487 n n C5 H51 LDA sing 488 n n C5 H52 LDA sing 489 n n C6 C7 LDA sing 490 n n C6 H61 LDA sing 491 n n C6 H62 LDA sing 492 n n C7 C8 LDA sing 493 n n C7 H71 LDA sing 494 n n C7 H72 LDA sing 495 n n C8 C9 LDA sing 496 n n C8 H81 LDA sing 497 n n C8 H82 LDA sing 498 n n C9 C10 LDA sing 499 n n C9 H91 LDA sing 500 n n C9 H92 LDA sing 501 n n C10 C11 LDA sing 502 n n C10 H101 LDA sing 503 n n C10 H102 LDA sing 504 n n C11 C12 LDA sing 505 n n C11 H111 LDA sing 506 n n C11 H112 LDA sing 507 n n C12 H121 LDA sing 508 n n C12 H122 LDA sing 509 n n C12 H123 LDA sing 510 n n # _atom_sites.entry_id 1UMX _atom_sites.fract_transf_matrix[1][1] 0.00706 _atom_sites.fract_transf_matrix[1][2] 0.004076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 1251 1251 LDA LDA . E 5 BCL L 1 1282 1282 BCL BCL . F 5 BCL L 1 1283 1283 BCL BCL . G 6 BPB L 1 1284 1284 BPB BPB . H 5 BCL M 1 1303 1303 BCL BCL . I 5 BCL M 1 1304 1304 BCL BCL . J 4 LDA M 1 1305 1305 LDA LDA . K 7 FE M 1 1306 1306 FE FE . L 6 BPB M 1 1307 1307 BPB BPB . M 8 SPN M 1 1308 1308 SPN SPN . N 9 U10 M 1 1309 1309 U10 U10 . O 10 PO4 M 1 1310 1310 PO4 PO4 . P 11 HOH H 1 2001 2001 HOH HOH . P 11 HOH H 2 2002 2002 HOH HOH . P 11 HOH H 3 2003 2003 HOH HOH . P 11 HOH H 4 2004 2004 HOH HOH . P 11 HOH H 5 2005 2005 HOH HOH . P 11 HOH H 6 2006 2006 HOH HOH . Q 11 HOH L 1 2001 2001 HOH HOH . Q 11 HOH L 2 2002 2002 HOH HOH . Q 11 HOH L 3 2003 2003 HOH HOH . Q 11 HOH L 4 2004 2004 HOH HOH . Q 11 HOH L 5 2005 2005 HOH HOH . Q 11 HOH L 6 2006 2006 HOH HOH . R 11 HOH M 1 2001 2001 HOH HOH . R 11 HOH M 2 2002 2002 HOH HOH . R 11 HOH M 3 2003 2003 HOH HOH . R 11 HOH M 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . J 4 78.845 67.342 69.289 1 75.95 ? N1 LDA 1305 M 1 HETATM 2 O O1 LDA . . . J 4 79.275 67.125 70.378 1 79.46 ? O1 LDA 1305 M 1 HETATM 3 C CM1 LDA . . . J 4 77.885 68.388 69.133 1 74.64 ? CM1 LDA 1305 M 1 HETATM 4 C CM2 LDA . . . J 4 79.791 67.753 68.284 1 76.62 ? CM2 LDA 1305 M 1 HETATM 5 C C1 LDA . . . J 4 78.025 66.113 69.022 1 74.87 ? C1 LDA 1305 M 1 HETATM 6 C C2 LDA . . . J 4 77.434 65.43 70.295 1 71.38 ? C2 LDA 1305 M 1 HETATM 7 C C3 LDA . . . J 4 75.898 65.297 70.329 1 67.7 ? C3 LDA 1305 M 1 HETATM 8 C C4 LDA . . . J 4 75.379 64.258 71.335 1 66.3 ? C4 LDA 1305 M 1 HETATM 9 C C5 LDA . . . J 4 73.85 64.122 71.33 1 64.74 ? C5 LDA 1305 M 1 HETATM 10 C C6 LDA . . . J 4 73.167 64.289 72.682 1 65.03 ? C6 LDA 1305 M 1 HETATM 11 C C7 LDA . . . J 4 71.686 63.935 72.617 1 64.9 ? C7 LDA 1305 M 1 HETATM 12 C C8 LDA . . . J 4 70.797 64.866 73.453 1 66.73 ? C8 LDA 1305 M 1 HETATM 13 C C9 LDA . . . J 4 69.376 64.286 73.722 1 67.97 ? C9 LDA 1305 M 1 HETATM 14 C C10 LDA . . . J 4 68.519 65.094 74.72 1 65.44 ? C10 LDA 1305 M 1 HETATM 15 C C11 LDA . . . J 4 67.06 65.162 74.276 1 63.74 ? C11 LDA 1305 M 1 HETATM 16 C C12 LDA . . . J 4 66.304 66.397 74.739 1 60.58 ? C12 LDA 1305 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #