data_1UMX
#
_model_server_result.job_id            Vr0rtjS8V7YbWmuFTZ2EVw 
_model_server_result.datetime_utc      '2025-03-06 02:02:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1umx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1308}' 
#
_entry.id    1UMX 
#
_exptl.entry_id    1UMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              594.993 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPEROIDENONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1UMX 
_cell.length_a            141.638 
_cell.length_b            141.638 
_cell.length_c            187.394 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 153 L HIS 153 1_555 F MG BCL . L BCL 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc2 B NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 B NE2 HIS 190 L HIS 190 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc4 B NE2 HIS 230 L HIS 230 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc5 C NE2 HIS 182 M HIS 182 1_555 H MG BCL . M BCL 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc6 C NE2 HIS 202 M HIS 202 1_555 I MG BCL . M BCL 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc7 C NE2 HIS 219 M HIS 219 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc9 C OE1 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc10 C NE2 HIS 266 M HIS 266 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
#
_chem_comp.formula           'C41 H70 O2' 
_chem_comp.formula_weight    594.993 
_chem_comp.id                SPN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPEROIDENONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CMA O1 SPN sing 632 n n 
CMA HMA1 SPN sing 633 n n 
CMA HMA2 SPN sing 634 n n 
CMA HMA3 SPN sing 635 n n 
O1 C1 SPN sing 636 n n 
CM1 C1 SPN sing 637 n n 
CM1 HM11 SPN sing 638 n n 
CM1 HM12 SPN sing 639 n n 
CM1 HM13 SPN sing 640 n n 
CM2 C1 SPN sing 641 n n 
CM2 HM21 SPN sing 642 n n 
CM2 HM22 SPN sing 643 n n 
CM2 HM23 SPN sing 644 n n 
C1 C2 SPN sing 645 n n 
C2 O2 SPN doub 646 n n 
C2 C3 SPN sing 647 n n 
C3 C4 SPN sing 648 n n 
C3 H31 SPN sing 649 n n 
C3 H32 SPN sing 650 n n 
C4 C5 SPN doub 651 e n 
C4 H4 SPN sing 652 n n 
C5 CM3 SPN sing 653 n n 
C5 C6 SPN sing 654 n n 
CM3 HM31 SPN sing 655 n n 
CM3 HM32 SPN sing 656 n n 
CM3 HM33 SPN sing 657 n n 
C6 C7 SPN sing 658 n n 
C6 H61 SPN sing 659 n n 
C6 H62 SPN sing 660 n n 
C7 C8 SPN sing 661 n n 
C7 H71 SPN sing 662 n n 
C7 H72 SPN sing 663 n n 
C8 C9 SPN doub 664 e n 
C8 H8 SPN sing 665 n n 
C9 CM4 SPN sing 666 n n 
C9 C10 SPN sing 667 n n 
CM4 HM41 SPN sing 668 n n 
CM4 HM42 SPN sing 669 n n 
CM4 HM43 SPN sing 670 n n 
C10 C11 SPN sing 671 n n 
C10 H101 SPN sing 672 n n 
C10 H102 SPN sing 673 n n 
C11 C12 SPN sing 674 n n 
C11 H111 SPN sing 675 n n 
C11 H112 SPN sing 676 n n 
C12 C13 SPN doub 677 e n 
C12 H12 SPN sing 678 n n 
C13 CM5 SPN sing 679 n n 
C13 C14 SPN sing 680 n n 
CM5 HM51 SPN sing 681 n n 
CM5 HM52 SPN sing 682 n n 
CM5 HM53 SPN sing 683 n n 
C14 C15 SPN sing 684 n n 
C14 H141 SPN sing 685 n n 
C14 H142 SPN sing 686 n n 
C15 C16 SPN sing 687 n n 
C15 H151 SPN sing 688 n n 
C15 H152 SPN sing 689 n n 
C16 C17 SPN sing 690 n n 
C16 H161 SPN sing 691 n n 
C16 H162 SPN sing 692 n n 
C17 C18 SPN sing 693 n n 
C17 H171 SPN sing 694 n n 
C17 H172 SPN sing 695 n n 
C18 CM6 SPN sing 696 n n 
C18 C19 SPN doub 697 e n 
CM6 HM61 SPN sing 698 n n 
CM6 HM62 SPN sing 699 n n 
CM6 HM63 SPN sing 700 n n 
C19 C20 SPN sing 701 n n 
C19 H19 SPN sing 702 n n 
C20 C21 SPN sing 703 n n 
C20 H201 SPN sing 704 n n 
C20 H202 SPN sing 705 n n 
C21 C22 SPN sing 706 n n 
C21 H211 SPN sing 707 n n 
C21 H212 SPN sing 708 n n 
C22 CM7 SPN sing 709 n n 
C22 C23 SPN sing 710 n n 
C22 H22 SPN sing 711 n n 
CM7 HM71 SPN sing 712 n n 
CM7 HM72 SPN sing 713 n n 
CM7 HM73 SPN sing 714 n n 
C23 C24 SPN sing 715 n n 
C23 H231 SPN sing 716 n n 
C23 H232 SPN sing 717 n n 
C24 C25 SPN sing 718 n n 
C24 H241 SPN sing 719 n n 
C24 H242 SPN sing 720 n n 
C25 C26 SPN doub 721 e n 
C25 H25 SPN sing 722 n n 
C26 CM8 SPN sing 723 n n 
C26 C27 SPN sing 724 n n 
CM8 HM81 SPN sing 725 n n 
CM8 HM82 SPN sing 726 n n 
CM8 HM83 SPN sing 727 n n 
C27 C28 SPN sing 728 n n 
C27 H271 SPN sing 729 n n 
C27 H272 SPN sing 730 n n 
C28 C29 SPN sing 731 n n 
C28 H281 SPN sing 732 n n 
C28 H282 SPN sing 733 n n 
C29 C30 SPN doub 734 n n 
C29 H29 SPN sing 735 n n 
C30 CM9 SPN sing 736 n n 
C30 CMB SPN sing 737 n n 
CM9 HM91 SPN sing 738 n n 
CM9 HM92 SPN sing 739 n n 
CM9 HM93 SPN sing 740 n n 
CMB HMB1 SPN sing 741 n n 
CMB HMB2 SPN sing 742 n n 
CMB HMB3 SPN sing 743 n n 
#
_atom_sites.entry_id                     1UMX 
_atom_sites.fract_transf_matrix[1][1]    0.00706 
_atom_sites.fract_transf_matrix[1][2]    0.004076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 1251 1251 LDA LDA . 
E 5 BCL L 1 1282 1282 BCL BCL . 
F 5 BCL L 1 1283 1283 BCL BCL . 
G 6 BPB L 1 1284 1284 BPB BPB . 
H 5 BCL M 1 1303 1303 BCL BCL . 
I 5 BCL M 1 1304 1304 BCL BCL . 
J 4 LDA M 1 1305 1305 LDA LDA . 
K 7 FE M 1 1306 1306 FE FE . 
L 6 BPB M 1 1307 1307 BPB BPB . 
M 8 SPN M 1 1308 1308 SPN SPN . 
N 9 U10 M 1 1309 1309 U10 U10 . 
O 10 PO4 M 1 1310 1310 PO4 PO4 . 
P 11 HOH H 1 2001 2001 HOH HOH . 
P 11 HOH H 2 2002 2002 HOH HOH . 
P 11 HOH H 3 2003 2003 HOH HOH . 
P 11 HOH H 4 2004 2004 HOH HOH . 
P 11 HOH H 5 2005 2005 HOH HOH . 
P 11 HOH H 6 2006 2006 HOH HOH . 
Q 11 HOH L 1 2001 2001 HOH HOH . 
Q 11 HOH L 2 2002 2002 HOH HOH . 
Q 11 HOH L 3 2003 2003 HOH HOH . 
Q 11 HOH L 4 2004 2004 HOH HOH . 
Q 11 HOH L 5 2005 2005 HOH HOH . 
Q 11 HOH L 6 2006 2006 HOH HOH . 
R 11 HOH M 1 2001 2001 HOH HOH . 
R 11 HOH M 2 2002 2002 HOH HOH . 
R 11 HOH M 3 2003 2003 HOH HOH . 
R 11 HOH M 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CMA SPN . . . M 8 52.406 79.832 37.768 1 65.25 ? CMA SPN 1308 M 1 
HETATM 2 O O1 SPN . . . M 8 52.653 81.262 37.644 1 65.93 ? O1 SPN 1308 M 1 
HETATM 3 C CM1 SPN . . . M 8 52.516 83.585 38.475 1 65.62 ? CM1 SPN 1308 M 1 
HETATM 4 C CM2 SPN . . . M 8 50.866 81.835 39.125 1 66.92 ? CM2 SPN 1308 M 1 
HETATM 5 C C1 SPN . . . M 8 52.312 82.104 38.77 1 66.69 ? C1 SPN 1308 M 1 
HETATM 6 C C2 SPN . . . M 8 53.079 81.785 40.022 1 67.96 ? C2 SPN 1308 M 1 
HETATM 7 O O2 SPN . . . M 8 52.719 82.371 41.028 1 70.91 ? O2 SPN 1308 M 1 
HETATM 8 C C3 SPN . . . M 8 54.257 80.832 40.13 1 67.55 ? C3 SPN 1308 M 1 
HETATM 9 C C4 SPN . . . M 8 55.134 81.084 41.146 1 66.11 ? C4 SPN 1308 M 1 
HETATM 10 C C5 SPN . . . M 8 56.411 80.381 41.361 1 64.81 ? C5 SPN 1308 M 1 
HETATM 11 C CM3 SPN . . . M 8 57.13 79.71 40.228 1 65.18 ? CM3 SPN 1308 M 1 
HETATM 12 C C6 SPN . . . M 8 56.925 80.415 42.617 1 62.87 ? C6 SPN 1308 M 1 
HETATM 13 C C7 SPN . . . M 8 58.136 79.786 43.151 1 59.43 ? C7 SPN 1308 M 1 
HETATM 14 C C8 SPN . . . M 8 58.478 80.076 44.439 1 58.23 ? C8 SPN 1308 M 1 
HETATM 15 C C9 SPN . . . M 8 59.594 79.461 45.172 1 56.01 ? C9 SPN 1308 M 1 
HETATM 16 C CM4 SPN . . . M 8 60.129 78.138 44.734 1 55.87 ? CM4 SPN 1308 M 1 
HETATM 17 C C10 SPN . . . M 8 60.113 79.984 46.288 1 51.91 ? C10 SPN 1308 M 1 
HETATM 18 C C11 SPN . . . M 8 61.165 79.218 46.962 1 49.51 ? C11 SPN 1308 M 1 
HETATM 19 C C12 SPN . . . M 8 61.548 79.732 48.148 1 48.92 ? C12 SPN 1308 M 1 
HETATM 20 C C13 SPN . . . M 8 62.555 79.185 49.024 1 45.93 ? C13 SPN 1308 M 1 
HETATM 21 C CM5 SPN . . . M 8 63.101 77.83 48.713 1 48.4 ? CM5 SPN 1308 M 1 
HETATM 22 C C14 SPN . . . M 8 62.943 79.925 50.096 1 44.33 ? C14 SPN 1308 M 1 
HETATM 23 C C15 SPN . . . M 8 63.971 79.492 51.09 1 45.35 ? C15 SPN 1308 M 1 
HETATM 24 C C16 SPN . . . M 8 64.51 80.299 52.059 1 43.14 ? C16 SPN 1308 M 1 
HETATM 25 C C17 SPN . . . M 8 64.086 81.803 52.242 1 37.81 ? C17 SPN 1308 M 1 
HETATM 26 C C18 SPN . . . M 8 64.49 82.497 53.324 1 38.01 ? C18 SPN 1308 M 1 
HETATM 27 C CM6 SPN . . . M 8 65.362 81.888 54.379 1 35.65 ? CM6 SPN 1308 M 1 
HETATM 28 C C19 SPN . . . M 8 64.056 83.891 53.462 1 37.5 ? C19 SPN 1308 M 1 
HETATM 29 C C20 SPN . . . M 8 63.904 84.513 54.647 1 37.94 ? C20 SPN 1308 M 1 
HETATM 30 C C21 SPN . . . M 8 63.448 85.902 54.608 1 40.68 ? C21 SPN 1308 M 1 
HETATM 31 C C22 SPN . . . M 8 63.445 86.794 55.628 1 40.55 ? C22 SPN 1308 M 1 
HETATM 32 C CM7 SPN . . . M 8 63.923 86.507 57.033 1 37.74 ? CM7 SPN 1308 M 1 
HETATM 33 C C23 SPN . . . M 8 62.966 88.133 55.244 1 41.85 ? C23 SPN 1308 M 1 
HETATM 34 C C24 SPN . . . M 8 63.904 89.219 55.712 1 45.87 ? C24 SPN 1308 M 1 
HETATM 35 C C25 SPN . . . M 8 63.328 90.503 55.243 1 54.13 ? C25 SPN 1308 M 1 
HETATM 36 C C26 SPN . . . M 8 63.937 91.43 54.456 1 58.37 ? C26 SPN 1308 M 1 
HETATM 37 C CM8 SPN . . . M 8 65.344 91.294 53.968 1 57.96 ? CM8 SPN 1308 M 1 
HETATM 38 C C27 SPN . . . M 8 63.168 92.66 54.123 1 63.41 ? C27 SPN 1308 M 1 
HETATM 39 C C28 SPN . . . M 8 63.117 93.579 55.348 1 66.98 ? C28 SPN 1308 M 1 
HETATM 40 C C29 SPN . . . M 8 62.631 94.939 54.977 1 72.5 ? C29 SPN 1308 M 1 
HETATM 41 C C30 SPN . . . M 8 62.225 95.829 55.921 1 76.34 ? C30 SPN 1308 M 1 
HETATM 42 C CM9 SPN . . . M 8 62.268 95.489 57.389 1 77.95 ? CM9 SPN 1308 M 1 
HETATM 43 C CMB SPN . . . M 8 61.729 97.193 55.515 1 78.27 ? CMB SPN 1308 M 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#