data_1UMX # _model_server_result.job_id PeRNyT-bWpmlZlWbTj3o7w _model_server_result.datetime_utc '2025-03-06 02:10:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1umx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1309}' # _entry.id 1UMX # _exptl.entry_id 1UMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UMX _cell.length_a 141.638 _cell.length_b 141.638 _cell.length_c 187.394 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 153 L HIS 153 1_555 F MG BCL . L BCL 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc2 B NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 B NE2 HIS 190 L HIS 190 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc4 B NE2 HIS 230 L HIS 230 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 C NE2 HIS 182 M HIS 182 1_555 H MG BCL . M BCL 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 C NE2 HIS 202 M HIS 202 1_555 I MG BCL . M BCL 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 C NE2 HIS 219 M HIS 219 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 C OE1 GLU 234 M GLU 234 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 C NE2 HIS 266 M HIS 266 1_555 K FE FE . M FE 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 812 n n C1 C6 U10 doub 813 n n C1 C1M U10 sing 814 n n C2 C3 U10 sing 815 n n C2 O2 U10 doub 816 n n C3 C4 U10 doub 817 n n C3 O3 U10 sing 818 n n C4 C5 U10 sing 819 n n C4 O4 U10 sing 820 n n C5 C6 U10 sing 821 n n C5 O5 U10 doub 822 n n C6 C7 U10 sing 823 n n C1M H1M1 U10 sing 824 n n C1M H1M2 U10 sing 825 n n C1M H1M3 U10 sing 826 n n C3M O3 U10 sing 827 n n C3M H3M1 U10 sing 828 n n C3M H3M2 U10 sing 829 n n C3M H3M3 U10 sing 830 n n C4M O4 U10 sing 831 n n C4M H4M1 U10 sing 832 n n C4M H4M2 U10 sing 833 n n C4M H4M3 U10 sing 834 n n C7 C8 U10 sing 835 n n C7 H71 U10 sing 836 n n C7 H72 U10 sing 837 n n C8 C9 U10 doub 838 e n C8 H8 U10 sing 839 n n C9 C10 U10 sing 840 n n C9 C11 U10 sing 841 n n C10 H101 U10 sing 842 n n C10 H102 U10 sing 843 n n C10 H103 U10 sing 844 n n C11 C12 U10 sing 845 n n C11 H111 U10 sing 846 n n C11 H112 U10 sing 847 n n C12 C13 U10 sing 848 n n C12 H121 U10 sing 849 n n C12 H122 U10 sing 850 n n C13 C14 U10 doub 851 e n C13 H13 U10 sing 852 n n C14 C15 U10 sing 853 n n C14 C16 U10 sing 854 n n C15 H151 U10 sing 855 n n C15 H152 U10 sing 856 n n C15 H153 U10 sing 857 n n C16 C17 U10 sing 858 n n C16 H161 U10 sing 859 n n C16 H162 U10 sing 860 n n C17 C18 U10 sing 861 n n C17 H171 U10 sing 862 n n C17 H172 U10 sing 863 n n C18 C19 U10 doub 864 e n C18 H18 U10 sing 865 n n C19 C20 U10 sing 866 n n C19 C21 U10 sing 867 n n C20 H201 U10 sing 868 n n C20 H202 U10 sing 869 n n C20 H203 U10 sing 870 n n C21 C22 U10 sing 871 n n C21 H211 U10 sing 872 n n C21 H212 U10 sing 873 n n C22 C23 U10 sing 874 n n C22 H221 U10 sing 875 n n C22 H222 U10 sing 876 n n C23 C24 U10 doub 877 e n C23 H23 U10 sing 878 n n C24 C25 U10 sing 879 n n C24 C26 U10 sing 880 n n C25 H251 U10 sing 881 n n C25 H252 U10 sing 882 n n C25 H253 U10 sing 883 n n C26 C27 U10 sing 884 n n C26 H261 U10 sing 885 n n C26 H262 U10 sing 886 n n C27 C28 U10 sing 887 n n C27 H271 U10 sing 888 n n C27 H272 U10 sing 889 n n C28 C29 U10 doub 890 e n C28 H28 U10 sing 891 n n C29 C30 U10 sing 892 n n C29 C31 U10 sing 893 n n C30 H301 U10 sing 894 n n C30 H302 U10 sing 895 n n C30 H303 U10 sing 896 n n C31 C32 U10 sing 897 n n C31 H311 U10 sing 898 n n C31 H312 U10 sing 899 n n C32 C33 U10 sing 900 n n C32 H321 U10 sing 901 n n C32 H322 U10 sing 902 n n C33 C34 U10 doub 903 e n C33 H33 U10 sing 904 n n C34 C35 U10 sing 905 n n C34 C36 U10 sing 906 n n C35 H351 U10 sing 907 n n C35 H352 U10 sing 908 n n C35 H353 U10 sing 909 n n C36 C37 U10 sing 910 n n C36 H361 U10 sing 911 n n C36 H362 U10 sing 912 n n C37 C38 U10 sing 913 n n C37 H371 U10 sing 914 n n C37 H372 U10 sing 915 n n C38 C39 U10 doub 916 e n C38 H38 U10 sing 917 n n C39 C40 U10 sing 918 n n C39 C41 U10 sing 919 n n C40 H401 U10 sing 920 n n C40 H402 U10 sing 921 n n C40 H403 U10 sing 922 n n C41 C42 U10 sing 923 n n C41 H411 U10 sing 924 n n C41 H412 U10 sing 925 n n C42 C43 U10 sing 926 n n C42 H421 U10 sing 927 n n C42 H422 U10 sing 928 n n C43 C44 U10 doub 929 e n C43 H43 U10 sing 930 n n C44 C45 U10 sing 931 n n C44 C46 U10 sing 932 n n C45 H451 U10 sing 933 n n C45 H452 U10 sing 934 n n C45 H453 U10 sing 935 n n C46 C47 U10 sing 936 n n C46 H461 U10 sing 937 n n C46 H462 U10 sing 938 n n C47 C48 U10 sing 939 n n C47 H471 U10 sing 940 n n C47 H472 U10 sing 941 n n C48 C49 U10 doub 942 e n C48 H48 U10 sing 943 n n C49 C50 U10 sing 944 n n C49 C51 U10 sing 945 n n C50 H501 U10 sing 946 n n C50 H502 U10 sing 947 n n C50 H503 U10 sing 948 n n C51 C52 U10 sing 949 n n C51 H511 U10 sing 950 n n C51 H512 U10 sing 951 n n C52 C53 U10 sing 952 n n C52 H521 U10 sing 953 n n C52 H522 U10 sing 954 n n C53 C54 U10 doub 955 n n C53 H53 U10 sing 956 n n C54 C55 U10 sing 957 n n C54 C56 U10 sing 958 n n C55 H551 U10 sing 959 n n C55 H552 U10 sing 960 n n C55 H553 U10 sing 961 n n C56 H561 U10 sing 962 n n C56 H562 U10 sing 963 n n C56 H563 U10 sing 964 n n # _atom_sites.entry_id 1UMX _atom_sites.fract_transf_matrix[1][1] 0.00706 _atom_sites.fract_transf_matrix[1][2] 0.004076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 1251 1251 LDA LDA . E 5 BCL L 1 1282 1282 BCL BCL . F 5 BCL L 1 1283 1283 BCL BCL . G 6 BPB L 1 1284 1284 BPB BPB . H 5 BCL M 1 1303 1303 BCL BCL . I 5 BCL M 1 1304 1304 BCL BCL . J 4 LDA M 1 1305 1305 LDA LDA . K 7 FE M 1 1306 1306 FE FE . L 6 BPB M 1 1307 1307 BPB BPB . M 8 SPN M 1 1308 1308 SPN SPN . N 9 U10 M 1 1309 1309 U10 U10 . O 10 PO4 M 1 1310 1310 PO4 PO4 . P 11 HOH H 1 2001 2001 HOH HOH . P 11 HOH H 2 2002 2002 HOH HOH . P 11 HOH H 3 2003 2003 HOH HOH . P 11 HOH H 4 2004 2004 HOH HOH . P 11 HOH H 5 2005 2005 HOH HOH . P 11 HOH H 6 2006 2006 HOH HOH . Q 11 HOH L 1 2001 2001 HOH HOH . Q 11 HOH L 2 2002 2002 HOH HOH . Q 11 HOH L 3 2003 2003 HOH HOH . Q 11 HOH L 4 2004 2004 HOH HOH . Q 11 HOH L 5 2005 2005 HOH HOH . Q 11 HOH L 6 2006 2006 HOH HOH . R 11 HOH M 1 2001 2001 HOH HOH . R 11 HOH M 2 2002 2002 HOH HOH . R 11 HOH M 3 2003 2003 HOH HOH . R 11 HOH M 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . N 9 57.242 57.031 74.981 1 26.28 ? C1 U10 1309 M 1 HETATM 2 C C2 U10 . . . N 9 55.768 57.141 75.031 1 31.42 ? C2 U10 1309 M 1 HETATM 3 C C3 U10 . . . N 9 55 56.996 76.324 1 32.39 ? C3 U10 1309 M 1 HETATM 4 C C4 U10 . . . N 9 55.763 56.696 77.544 1 28.92 ? C4 U10 1309 M 1 HETATM 5 C C5 U10 . . . N 9 57.26 56.594 77.48 1 30.92 ? C5 U10 1309 M 1 HETATM 6 C C6 U10 . . . N 9 58.001 56.772 76.207 1 26.17 ? C6 U10 1309 M 1 HETATM 7 C C1M U10 . . . N 9 57.94 57.178 73.683 1 26.87 ? C1M U10 1309 M 1 HETATM 8 C C3M U10 . . . N 9 53.011 58.292 75.941 1 37.91 ? C3M U10 1309 M 1 HETATM 9 C C4M U10 . . . N 9 53.991 57.172 79.217 1 33.79 ? C4M U10 1309 M 1 HETATM 10 C C7 U10 . . . N 9 59.497 56.693 76.216 1 24.63 ? C7 U10 1309 M 1 HETATM 11 C C8 U10 . . . N 9 60.07 58.067 75.93 1 23.89 ? C8 U10 1309 M 1 HETATM 12 C C9 U10 . . . N 9 60.753 58.794 76.853 1 26.46 ? C9 U10 1309 M 1 HETATM 13 C C10 U10 . . . N 9 60.931 58.314 78.255 1 19.3 ? C10 U10 1309 M 1 HETATM 14 C C11 U10 . . . N 9 61.375 60.139 76.527 1 29.45 ? C11 U10 1309 M 1 HETATM 15 C C12 U10 . . . N 9 62.919 60.119 76.488 1 34.18 ? C12 U10 1309 M 1 HETATM 16 C C13 U10 . . . N 9 63.51 59.155 75.457 1 35.08 ? C13 U10 1309 M 1 HETATM 17 C C14 U10 . . . N 9 64.354 59.541 74.46 1 39.07 ? C14 U10 1309 M 1 HETATM 18 C C15 U10 . . . N 9 64.822 60.976 74.319 1 38.7 ? C15 U10 1309 M 1 HETATM 19 C C16 U10 . . . N 9 64.862 58.535 73.446 1 39.47 ? C16 U10 1309 M 1 HETATM 20 C C17 U10 . . . N 9 66.337 58.297 73.727 1 40.53 ? C17 U10 1309 M 1 HETATM 21 C C18 U10 . . . N 9 66.544 57.113 74.64 1 40.91 ? C18 U10 1309 M 1 HETATM 22 C C19 U10 . . . N 9 67.765 56.918 75.179 1 41.42 ? C19 U10 1309 M 1 HETATM 23 C C20 U10 . . . N 9 68.876 57.779 74.707 1 43.56 ? C20 U10 1309 M 1 HETATM 24 C C21 U10 . . . N 9 68.106 55.889 76.228 1 41.14 ? C21 U10 1309 M 1 HETATM 25 C C22 U10 . . . N 9 68.589 54.614 75.55 1 42.34 ? C22 U10 1309 M 1 HETATM 26 C C23 U10 . . . N 9 68.917 53.498 76.518 1 47.84 ? C23 U10 1309 M 1 HETATM 27 C C24 U10 . . . N 9 68.825 52.199 76.131 1 50.58 ? C24 U10 1309 M 1 HETATM 28 C C25 U10 . . . N 9 68.337 51.789 74.784 1 51.82 ? C25 U10 1309 M 1 HETATM 29 C C26 U10 . . . N 9 69.159 51.052 77.013 1 51.97 ? C26 U10 1309 M 1 HETATM 30 C C27 U10 . . . N 9 70.208 51.457 78.026 1 56.08 ? C27 U10 1309 M 1 HETATM 31 C C28 U10 . . . N 9 70.77 50.088 78.239 1 62.82 ? C28 U10 1309 M 1 HETATM 32 C C29 U10 . . . N 9 71.319 49.744 79.389 1 67.63 ? C29 U10 1309 M 1 HETATM 33 C C30 U10 . . . N 9 71.742 50.838 80.346 1 68.88 ? C30 U10 1309 M 1 HETATM 34 C C31 U10 . . . N 9 71.491 48.262 79.66 1 69.67 ? C31 U10 1309 M 1 HETATM 35 C C32 U10 . . . N 9 71.006 47.482 78.43 1 67.99 ? C32 U10 1309 M 1 HETATM 36 C C33 U10 . . . N 9 70.209 46.272 78.912 1 67.74 ? C33 U10 1309 M 1 HETATM 37 C C34 U10 . . . N 9 70.383 45.061 78.32 1 67.44 ? C34 U10 1309 M 1 HETATM 38 C C35 U10 . . . N 9 71.685 44.846 77.547 1 64.94 ? C35 U10 1309 M 1 HETATM 39 C C36 U10 . . . N 9 69.42 44.09 78.369 1 62.93 ? C36 U10 1309 M 1 HETATM 40 C C37 U10 . . . N 9 69.081 43.203 79.543 1 61.05 ? C37 U10 1309 M 1 HETATM 41 C C38 U10 . . . N 9 69.811 43.567 80.829 1 62.05 ? C38 U10 1309 M 1 HETATM 42 C C39 U10 . . . N 9 70.713 42.768 81.479 1 61.19 ? C39 U10 1309 M 1 HETATM 43 C C40 U10 . . . N 9 71.591 43.41 82.542 1 62.02 ? C40 U10 1309 M 1 HETATM 44 C C41 U10 . . . N 9 70.882 41.288 81.193 1 56.44 ? C41 U10 1309 M 1 HETATM 45 O O2 U10 . . . N 9 55.155 57.358 73.958 1 34.18 ? O2 U10 1309 M 1 HETATM 46 O O3 U10 . . . N 9 53.609 57.06 76.332 1 36.52 ? O3 U10 1309 M 1 HETATM 47 O O4 U10 . . . N 9 55.172 56.532 78.745 1 30.28 ? O4 U10 1309 M 1 HETATM 48 O O5 U10 . . . N 9 57.945 56.43 78.528 1 34.47 ? O5 U10 1309 M 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #