data_1UOB # _model_server_result.job_id E5UaJ4LzIJ9O_j5KfNoEsw _model_server_result.datetime_utc '2024-11-28 06:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1311}' # _entry.id 1UOB # _exptl.entry_id 1UOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.39 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENICILLIN G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UOB _cell.length_a 106.6 _cell.length_b 106.6 _cell.length_c 71.6 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 183 A HIS 183 1_555 B FE FE2 . A FE2 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OD1 ASP 185 A ASP 185 1_555 B FE FE2 . A FE2 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A NE2 HIS 243 A HIS 243 1_555 B FE FE2 . A FE2 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 B FE FE2 . A FE2 1310 1_555 C S1 PNN . A PNN 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc5 B FE FE2 . A FE2 1310 1_555 D O1 AKG . A AKG 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 B FE FE2 . A FE2 1310 1_555 D O5 AKG . A AKG 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B FE FE2 . A FE2 1310 1_555 E O HOH . A HOH 2090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C16 H18 N2 O4 S' _chem_comp.formula_weight 334.39 _chem_comp.id PNN _chem_comp.mon_nstd_flag . _chem_comp.name 'PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNN doub 275 n n C7 N4 PNN sing 276 n n C7 C6 PNN sing 277 n n N4 C3 PNN sing 278 n n N4 C5 PNN sing 279 n n C3 C11 PNN sing 280 n n C3 C2 PNN sing 281 n n C3 HC3 PNN sing 282 n n C11 O13 PNN sing 283 n n C11 O12 PNN doub 284 n n O13 HXT PNN sing 285 n n C2 C10 PNN sing 286 n n C2 C9 PNN sing 287 n n C2 S1 PNN sing 288 n n C10 H101 PNN sing 289 n n C10 H102 PNN sing 290 n n C10 H103 PNN sing 291 n n C9 HC91 PNN sing 292 n n C9 HC92 PNN sing 293 n n C9 HC93 PNN sing 294 n n S1 C5 PNN sing 295 n n C5 C6 PNN sing 296 n n C5 HC5 PNN sing 297 n n C6 N14 PNN sing 298 n n C6 HC6 PNN sing 299 n n N14 C15 PNN sing 300 n n N14 H14 PNN sing 301 n n C15 O16 PNN doub 302 n n C15 C17 PNN sing 303 n n C17 C18 PNN sing 304 n n C17 H171 PNN sing 305 n n C17 H172 PNN sing 306 n n C18 C19 PNN doub 307 n y C18 C23 PNN sing 308 n y C19 C20 PNN sing 309 n y C19 H19 PNN sing 310 n n C20 C21 PNN doub 311 n y C20 H20 PNN sing 312 n n C21 C22 PNN sing 313 n y C21 H21 PNN sing 314 n n C22 C23 PNN doub 315 n y C22 H22 PNN sing 316 n n C23 H23 PNN sing 317 n n # _atom_sites.entry_id 1UOB _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0.005416 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 1310 1310 FE2 FE2 . C 3 PNN A 1 1311 1311 PNN PNN . D 4 AKG A 1 1312 1312 AKG AKG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNN . . . C 3 2.958 16.171 56.448 0.5 77.7 ? O8 PNN 1311 A 1 HETATM 2 C C7 PNN . . . C 3 3.762 15.302 56.124 0.5 79.19 ? C7 PNN 1311 A 1 HETATM 3 N N4 PNN . . . C 3 5.006 15.077 56.436 0.5 79.78 ? N4 PNN 1311 A 1 HETATM 4 C C3 PNN . . . C 3 6.061 16.055 56.326 0.5 80.77 ? C3 PNN 1311 A 1 HETATM 5 C C11 PNN . . . C 3 6.326 16.767 57.654 0.5 81.93 ? C11 PNN 1311 A 1 HETATM 6 O O13 PNN . . . C 3 5.406 17.04 58.431 0.5 82.82 ? O13 PNN 1311 A 1 HETATM 7 O O12 PNN . . . C 3 7.573 17.114 57.989 0.5 83.32 ? O12 PNN 1311 A 1 HETATM 8 C C2 PNN . . . C 3 7.227 15.248 55.753 0.5 79.77 ? C2 PNN 1311 A 1 HETATM 9 C C10 PNN . . . C 3 7.895 14.484 56.879 0.5 79.3 ? C10 PNN 1311 A 1 HETATM 10 C C9 PNN . . . C 3 8.187 16.12 54.991 0.5 78.88 ? C9 PNN 1311 A 1 HETATM 11 S S1 PNN . . . C 3 6.545 14.169 54.528 0.5 80.72 ? S1 PNN 1311 A 1 HETATM 12 C C5 PNN . . . C 3 5.195 13.876 55.623 0.5 79.47 ? C5 PNN 1311 A 1 HETATM 13 C C6 PNN . . . C 3 3.725 14.086 55.226 0.5 78.98 ? C6 PNN 1311 A 1 HETATM 14 N N14 PNN . . . C 3 3.449 14.266 53.835 0.5 78.42 ? N14 PNN 1311 A 1 HETATM 15 C C15 PNN . . . C 3 2.222 14.71 53.602 0.5 77.83 ? C15 PNN 1311 A 1 HETATM 16 O O16 PNN . . . C 3 1.708 15.597 54.279 0.5 78.65 ? O16 PNN 1311 A 1 HETATM 17 C C17 PNN . . . C 3 1.452 14.119 52.478 0.5 78.3 ? C17 PNN 1311 A 1 HETATM 18 C C18 PNN . . . C 3 0.554 15.234 52.048 0.5 78.61 ? C18 PNN 1311 A 1 HETATM 19 C C19 PNN . . . C 3 0.919 16.589 52.18 0.5 79.19 ? C19 PNN 1311 A 1 HETATM 20 C C20 PNN . . . C 3 0.054 17.591 51.769 0.5 79.39 ? C20 PNN 1311 A 1 HETATM 21 C C21 PNN . . . C 3 -1.175 17.235 51.228 0.5 79.46 ? C21 PNN 1311 A 1 HETATM 22 C C22 PNN . . . C 3 -1.527 15.887 51.103 0.5 79.23 ? C22 PNN 1311 A 1 HETATM 23 C C23 PNN . . . C 3 -0.667 14.885 51.511 0.5 79.08 ? C23 PNN 1311 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #