data_1UPR # _model_server_result.job_id EqQnSOyJ98TcqY5npKdpMA _model_server_result.datetime_utc '2024-11-15 03:04:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1upr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2154}' # _entry.id 1UPR # _exptl.entry_id 1UPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.075 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UPR _cell.length_a 92.577 _cell.length_b 92.577 _cell.length_c 35.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id 4IP _chem_comp.mon_nstd_flag . _chem_comp.name INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 4IP sing 1 n n C1 C2 4IP sing 2 n n C1 C6 4IP sing 3 n n C1 H1 4IP sing 4 n n O1 P1 4IP sing 5 n n C2 O2 4IP sing 6 n n C2 C3 4IP sing 7 n n C2 H2 4IP sing 8 n n O2 HO2 4IP sing 9 n n C3 O3 4IP sing 10 n n C3 C4 4IP sing 11 n n C3 H3 4IP sing 12 n n O3 P3 4IP sing 13 n n C4 O4 4IP sing 14 n n C4 C5 4IP sing 15 n n C4 H4 4IP sing 16 n n O4 P4 4IP sing 17 n n C5 O5 4IP sing 18 n n C5 C6 4IP sing 19 n n C5 H5 4IP sing 20 n n O5 P5 4IP sing 21 n n C6 O6 4IP sing 22 n n C6 H6 4IP sing 23 n n O6 HO6 4IP sing 24 n n P1 O1P 4IP doub 25 n n P1 O2P 4IP sing 26 n n P1 O3P 4IP sing 27 n n O2P HO2P 4IP sing 28 n n O3P HO3P 4IP sing 29 n n P3 O4P 4IP doub 30 n n P3 O5P 4IP sing 31 n n P3 O6P 4IP sing 32 n n O5P HO5P 4IP sing 33 n n O6P HO6P 4IP sing 34 n n P4 O7P 4IP sing 35 n n P4 O8P 4IP sing 36 n n P4 O9P 4IP doub 37 n n O7P HO7P 4IP sing 38 n n O8P HO8P 4IP sing 39 n n P5 OPF 4IP sing 40 n n P5 OPG 4IP doub 41 n n P5 OPH 4IP sing 42 n n OPF HOP1 4IP sing 43 n n OPH HOP3 4IP sing 44 n n # _atom_sites.entry_id 1UPR _atom_sites.fract_transf_matrix[1][1] 0.010802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4IP A 1 2154 2154 4IP 4IP . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4IP . . . B 2 19.855 32.208 19.903 1 98.14 ? C1 4IP 2154 A 1 HETATM 2 O O1 4IP . . . B 2 21.031 32.843 20.443 1 97.54 ? O1 4IP 2154 A 1 HETATM 3 C C2 4IP . . . B 2 20.257 30.853 19.313 1 98.21 ? C2 4IP 2154 A 1 HETATM 4 O O2 4IP . . . B 2 21.39 31.004 18.445 1 98.29 ? O2 4IP 2154 A 1 HETATM 5 C C3 4IP . . . B 2 19.089 30.164 18.579 1 98.01 ? C3 4IP 2154 A 1 HETATM 6 O O3 4IP . . . B 2 19.545 28.978 17.896 1 98.4 ? O3 4IP 2154 A 1 HETATM 7 C C4 4IP . . . B 2 18.406 31.056 17.538 1 97.38 ? C4 4IP 2154 A 1 HETATM 8 O O4 4IP . . . B 2 17.188 30.407 17.19 1 95.34 ? O4 4IP 2154 A 1 HETATM 9 C C5 4IP . . . B 2 18.063 32.479 18.018 1 98.29 ? C5 4IP 2154 A 1 HETATM 10 O O5 4IP . . . B 2 17.685 33.273 16.844 1 98.92 ? O5 4IP 2154 A 1 HETATM 11 C C6 4IP . . . B 2 19.185 33.143 18.874 1 98.43 ? C6 4IP 2154 A 1 HETATM 12 O O6 4IP . . . B 2 18.643 34.251 19.603 1 98.68 ? O6 4IP 2154 A 1 HETATM 13 P P1 4IP . . . B 2 21.336 32.814 22.038 1 96.58 ? P1 4IP 2154 A 1 HETATM 14 O O1P 4IP . . . B 2 20.924 31.318 22.52 1 97.05 ? O1P 4IP 2154 A 1 HETATM 15 O O2P 4IP . . . B 2 20.25 33.836 22.666 1 96.92 ? O2P 4IP 2154 A 1 HETATM 16 O O3P 4IP . . . B 2 22.724 33.171 22.407 1 96.63 ? O3P 4IP 2154 A 1 HETATM 17 P P3 4IP . . . B 2 19.715 27.53 18.636 1 97.19 ? P3 4IP 2154 A 1 HETATM 18 O O4P 4IP . . . B 2 18.707 27.555 19.899 1 97.22 ? O4P 4IP 2154 A 1 HETATM 19 O O5P 4IP . . . B 2 19.058 26.399 17.692 1 97.65 ? O5P 4IP 2154 A 1 HETATM 20 O O6P 4IP . . . B 2 21.117 27.226 18.974 1 97.03 ? O6P 4IP 2154 A 1 HETATM 21 P P4 4IP . . . B 2 17.123 29.518 15.884 1 93.1 ? P4 4IP 2154 A 1 HETATM 22 O O7P 4IP . . . B 2 17.557 28.023 16.29 1 92.53 ? O7P 4IP 2154 A 1 HETATM 23 O O8P 4IP . . . B 2 15.562 29.441 15.426 1 93.25 ? O8P 4IP 2154 A 1 HETATM 24 O O9P 4IP . . . B 2 17.987 30.049 14.806 1 92.92 ? O9P 4IP 2154 A 1 HETATM 25 P P5 4IP . . . B 2 16.119 33.747 16.566 1 98.53 ? P5 4IP 2154 A 1 HETATM 26 O OPF 4IP . . . B 2 15.344 33.451 17.943 1 98.92 ? OPF 4IP 2154 A 1 HETATM 27 O OPG 4IP . . . B 2 16.165 35.368 16.512 1 99.56 ? OPG 4IP 2154 A 1 HETATM 28 O OPH 4IP . . . B 2 15.419 33.13 15.418 1 99.98 ? OPH 4IP 2154 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #