data_1UQU
#
_model_server_result.job_id            pQ8A3EWz9OjGEp3j2izZew 
_model_server_result.datetime_utc      '2024-11-23 19:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1uqu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1457}' 
#
_entry.id    1UQU 
#
_exptl.entry_id    1UQU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1UQU 
_cell.length_a            88.905 
_cell.length_b            102.31 
_cell.length_c            118.924 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 88.905 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                UPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UPG sing 358 n n 
N1 C6 UPG sing 359 n n 
N1 C1C UPG sing 360 n n 
C2 N3 UPG sing 361 n n 
C2 O2 UPG doub 362 n n 
N3 C4 UPG sing 363 n n 
N3 HN3 UPG sing 364 n n 
C4 C5 UPG sing 365 n n 
C4 O4 UPG doub 366 n n 
C5 C6 UPG doub 367 n n 
C5 H5 UPG sing 368 n n 
C6 H6 UPG sing 369 n n 
C1C C2C UPG sing 370 n n 
C1C O4C UPG sing 371 n n 
C1C H1C UPG sing 372 n n 
C2C O2C UPG sing 373 n n 
C2C C3C UPG sing 374 n n 
C2C H2C UPG sing 375 n n 
O2C HO2C UPG sing 376 n n 
C3C C4C UPG sing 377 n n 
C3C O3C UPG sing 378 n n 
C3C H3C UPG sing 379 n n 
C4C O4C UPG sing 380 n n 
C4C C5C UPG sing 381 n n 
C4C H4C UPG sing 382 n n 
O3C HO3C UPG sing 383 n n 
C5C O5C UPG sing 384 n n 
C5C H5C1 UPG sing 385 n n 
C5C H5C2 UPG sing 386 n n 
O5C PA UPG sing 387 n n 
PA O1A UPG doub 388 n n 
PA O2A UPG sing 389 n n 
PA O3A UPG sing 390 n n 
O2A HOA2 UPG sing 391 n n 
O3A PB UPG sing 392 n n 
PB O1B UPG doub 393 n n 
PB O2B UPG sing 394 n n 
PB O3B UPG sing 395 n n 
O2B HOB2 UPG sing 396 n n 
O3B C1' UPG sing 397 n n 
C1' C2' UPG sing 398 n n 
C1' O5' UPG sing 399 n n 
C1' H1' UPG sing 400 n n 
C2' C3' UPG sing 401 n n 
C2' O2' UPG sing 402 n n 
C2' H2' UPG sing 403 n n 
C3' C4' UPG sing 404 n n 
C3' O3' UPG sing 405 n n 
C3' H3' UPG sing 406 n n 
C4' C5' UPG sing 407 n n 
C4' O4' UPG sing 408 n n 
C4' H4' UPG sing 409 n n 
C5' C6' UPG sing 410 n n 
C5' O5' UPG sing 411 n n 
C5' H5' UPG sing 412 n n 
C6' O6' UPG sing 413 n n 
C6' "H6'1" UPG sing 414 n n 
C6' "H6'2" UPG sing 415 n n 
O2' HO2' UPG sing 416 n n 
O3' HO3' UPG sing 417 n n 
O4' HO4' UPG sing 418 n n 
O6' HO6' UPG sing 419 n n 
#
_atom_sites.entry_id                     1UQU 
_atom_sites.fract_transf_matrix[1][1]    0.011248 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UPG A 1 1457 1457 UPG UPG . 
D 3 HOH A 1 2001 2001 HOH HOH . 
D 3 HOH A 2 2002 2002 HOH HOH . 
D 3 HOH A 3 2003 2003 HOH HOH . 
D 3 HOH A 4 2004 2004 HOH HOH . 
D 3 HOH A 5 2005 2005 HOH HOH . 
D 3 HOH A 6 2006 2006 HOH HOH . 
D 3 HOH A 7 2007 2007 HOH HOH . 
D 3 HOH A 8 2008 2008 HOH HOH . 
D 3 HOH A 9 2009 2009 HOH HOH . 
D 3 HOH A 10 2010 2010 HOH HOH . 
D 3 HOH A 11 2011 2011 HOH HOH . 
D 3 HOH A 12 2012 2012 HOH HOH . 
D 3 HOH A 13 2013 2013 HOH HOH . 
D 3 HOH A 14 2014 2014 HOH HOH . 
D 3 HOH A 15 2015 2015 HOH HOH . 
D 3 HOH A 16 2016 2016 HOH HOH . 
D 3 HOH A 17 2017 2017 HOH HOH . 
D 3 HOH A 18 2018 2018 HOH HOH . 
D 3 HOH A 19 2019 2019 HOH HOH . 
D 3 HOH A 20 2020 2020 HOH HOH . 
D 3 HOH A 21 2021 2021 HOH HOH . 
D 3 HOH A 22 2022 2022 HOH HOH . 
D 3 HOH A 23 2023 2023 HOH HOH . 
D 3 HOH A 24 2024 2024 HOH HOH . 
D 3 HOH A 25 2025 2025 HOH HOH . 
D 3 HOH A 26 2026 2026 HOH HOH . 
D 3 HOH A 27 2027 2027 HOH HOH . 
D 3 HOH A 28 2028 2028 HOH HOH . 
D 3 HOH A 29 2029 2029 HOH HOH . 
D 3 HOH A 30 2030 2030 HOH HOH . 
D 3 HOH A 31 2031 2031 HOH HOH . 
D 3 HOH A 32 2032 2032 HOH HOH . 
D 3 HOH A 33 2033 2033 HOH HOH . 
D 3 HOH A 34 2034 2034 HOH HOH . 
D 3 HOH A 35 2035 2035 HOH HOH . 
D 3 HOH A 36 2036 2036 HOH HOH . 
D 3 HOH A 37 2037 2037 HOH HOH . 
D 3 HOH A 38 2038 2038 HOH HOH . 
D 3 HOH A 39 2039 2039 HOH HOH . 
D 3 HOH A 40 2040 2040 HOH HOH . 
D 3 HOH A 41 2041 2041 HOH HOH . 
D 3 HOH A 42 2042 2042 HOH HOH . 
D 3 HOH A 43 2043 2043 HOH HOH . 
D 3 HOH A 44 2044 2044 HOH HOH . 
D 3 HOH A 45 2045 2045 HOH HOH . 
D 3 HOH A 46 2046 2046 HOH HOH . 
D 3 HOH A 47 2047 2047 HOH HOH . 
D 3 HOH A 48 2048 2048 HOH HOH . 
D 3 HOH A 49 2049 2049 HOH HOH . 
D 3 HOH A 50 2050 2050 HOH HOH . 
D 3 HOH A 51 2051 2051 HOH HOH . 
D 3 HOH A 52 2052 2052 HOH HOH . 
D 3 HOH A 53 2053 2053 HOH HOH . 
D 3 HOH A 54 2054 2054 HOH HOH . 
D 3 HOH A 55 2055 2055 HOH HOH . 
D 3 HOH A 56 2056 2056 HOH HOH . 
D 3 HOH A 57 2057 2057 HOH HOH . 
D 3 HOH A 58 2058 2058 HOH HOH . 
D 3 HOH A 59 2059 2059 HOH HOH . 
D 3 HOH A 60 2060 2060 HOH HOH . 
D 3 HOH A 61 2061 2061 HOH HOH . 
D 3 HOH A 62 2062 2062 HOH HOH . 
D 3 HOH A 63 2063 2063 HOH HOH . 
D 3 HOH A 64 2064 2064 HOH HOH . 
D 3 HOH A 65 2065 2065 HOH HOH . 
D 3 HOH A 66 2066 2066 HOH HOH . 
D 3 HOH A 67 2067 2067 HOH HOH . 
D 3 HOH A 68 2068 2068 HOH HOH . 
D 3 HOH A 69 2069 2069 HOH HOH . 
D 3 HOH A 70 2070 2070 HOH HOH . 
D 3 HOH A 71 2071 2071 HOH HOH . 
D 3 HOH A 72 2072 2072 HOH HOH . 
D 3 HOH A 73 2073 2073 HOH HOH . 
D 3 HOH A 74 2074 2074 HOH HOH . 
E 3 HOH B 1 2001 2001 HOH HOH . 
E 3 HOH B 2 2002 2002 HOH HOH . 
E 3 HOH B 3 2003 2003 HOH HOH . 
E 3 HOH B 4 2004 2004 HOH HOH . 
E 3 HOH B 5 2005 2005 HOH HOH . 
E 3 HOH B 6 2006 2006 HOH HOH . 
E 3 HOH B 7 2007 2007 HOH HOH . 
E 3 HOH B 8 2008 2008 HOH HOH . 
E 3 HOH B 9 2009 2009 HOH HOH . 
E 3 HOH B 10 2010 2010 HOH HOH . 
E 3 HOH B 11 2011 2011 HOH HOH . 
E 3 HOH B 12 2012 2012 HOH HOH . 
E 3 HOH B 13 2013 2013 HOH HOH . 
E 3 HOH B 14 2014 2014 HOH HOH . 
E 3 HOH B 15 2015 2015 HOH HOH . 
E 3 HOH B 16 2016 2016 HOH HOH . 
E 3 HOH B 17 2017 2017 HOH HOH . 
E 3 HOH B 18 2018 2018 HOH HOH . 
E 3 HOH B 19 2019 2019 HOH HOH . 
E 3 HOH B 20 2020 2020 HOH HOH . 
E 3 HOH B 21 2021 2021 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UPG . . . C 2 27.358 21.672 14.257 1 26.94 ? N1 UPG 1457 A 1 
HETATM 2 C C2 UPG . . . C 2 26.412 21.033 13.443 1 26.25 ? C2 UPG 1457 A 1 
HETATM 3 N N3 UPG . . . C 2 26.062 19.696 13.653 1 26.03 ? N3 UPG 1457 A 1 
HETATM 4 C C4 UPG . . . C 2 26.675 18.987 14.684 1 26.89 ? C4 UPG 1457 A 1 
HETATM 5 C C5 UPG . . . C 2 27.663 19.604 15.467 1 26.42 ? C5 UPG 1457 A 1 
HETATM 6 C C6 UPG . . . C 2 27.997 20.954 15.266 1 27.5 ? C6 UPG 1457 A 1 
HETATM 7 O O2 UPG . . . C 2 25.803 21.693 12.61 1 24.04 ? O2 UPG 1457 A 1 
HETATM 8 O O4 UPG . . . C 2 26.203 17.862 14.975 1 27.16 ? O4 UPG 1457 A 1 
HETATM 9 C C1C UPG . . . C 2 27.669 23.05 13.943 1 25.59 ? C1C UPG 1457 A 1 
HETATM 10 C C2C UPG . . . C 2 27.355 23.983 15.054 1 24.1 ? C2C UPG 1457 A 1 
HETATM 11 O O2C UPG . . . C 2 26.014 24.324 15.046 1 22.56 ? O2C UPG 1457 A 1 
HETATM 12 C C3C UPG . . . C 2 28.301 25.109 14.747 1 24.9 ? C3C UPG 1457 A 1 
HETATM 13 C C4C UPG . . . C 2 29.538 24.387 14.207 1 26.3 ? C4C UPG 1457 A 1 
HETATM 14 O O4C UPG . . . C 2 29.077 23.092 13.826 1 22.99 ? O4C UPG 1457 A 1 
HETATM 15 O O3C UPG . . . C 2 27.804 26.037 13.772 1 27.82 ? O3C UPG 1457 A 1 
HETATM 16 C C5C UPG . . . C 2 30.604 24.268 15.304 1 26.96 ? C5C UPG 1457 A 1 
HETATM 17 O O5C UPG . . . C 2 31.367 25.463 15.267 1 28.96 ? O5C UPG 1457 A 1 
HETATM 18 P PA UPG . . . C 2 32.006 25.905 16.686 1 27.24 ? PA UPG 1457 A 1 
HETATM 19 O O1A UPG . . . C 2 32.451 27.257 16.539 1 29.13 ? O1A UPG 1457 A 1 
HETATM 20 O O2A UPG . . . C 2 31.033 25.715 17.807 1 28.47 ? O2A UPG 1457 A 1 
HETATM 21 O O3A UPG . . . C 2 33.16 24.874 16.974 1 26.71 ? O3A UPG 1457 A 1 
HETATM 22 P PB UPG . . . C 2 34.314 24.417 16.012 1 30.22 ? PB UPG 1457 A 1 
HETATM 23 O O1B UPG . . . C 2 34 23.106 15.37 1 27.71 ? O1B UPG 1457 A 1 
HETATM 24 O O2B UPG . . . C 2 35.515 24.044 16.851 1 25.58 ? O2B UPG 1457 A 1 
HETATM 25 O O3B UPG . . . C 2 35.051 25.129 14.801 1 30.83 ? O3B UPG 1457 A 1 
HETATM 26 C C1' UPG . . . C 2 36.33 25.913 14.91 1 30.27 ? C1' UPG 1457 A 1 
HETATM 27 C C2' UPG . . . C 2 36.908 26.643 16.049 1 29.49 ? C2' UPG 1457 A 1 
HETATM 28 C C3' UPG . . . C 2 35.832 27.518 16.9 1 29.55 ? C3' UPG 1457 A 1 
HETATM 29 C C4' UPG . . . C 2 35.28 28.663 15.979 1 28.27 ? C4' UPG 1457 A 1 
HETATM 30 C C5' UPG . . . C 2 34.785 27.988 14.509 1 29.19 ? C5' UPG 1457 A 1 
HETATM 31 C C6' UPG . . . C 2 34.674 29.181 13.467 1 25.09 ? C6' UPG 1457 A 1 
HETATM 32 O O2' UPG . . . C 2 37.451 25.672 16.938 1 28.72 ? O2' UPG 1457 A 1 
HETATM 33 O O3' UPG . . . C 2 36.2 28.183 18.258 1 27.99 ? O3' UPG 1457 A 1 
HETATM 34 O O4' UPG . . . C 2 34.067 29.289 16.703 1 29.99 ? O4' UPG 1457 A 1 
HETATM 35 O O5' UPG . . . C 2 35.872 27.122 14.107 1 29.4 ? O5' UPG 1457 A 1 
HETATM 36 O O6' UPG . . . C 2 35.652 30.213 13.64 1 23.07 ? O6' UPG 1457 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#