data_1URJ # _model_server_result.job_id bSiN-_njpPVpzdPu-orPqw _model_server_result.datetime_utc '2024-11-05 00:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1urj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2132}' # _entry.id 1URJ # _exptl.entry_id 1URJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1URJ _cell.length_a 100.91 _cell.length_b 145.37 _cell.length_c 162.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1URJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 26 A CYS 26 1_555 F HG HG . A HG 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc2 A SG CYS 499 A CYS 499 1_555 C ZN ZN . A ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 502 A CYS 502 1_555 C ZN ZN . A ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A SG CYS 510 A CYS 510 1_555 C ZN ZN . A ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 A ND1 HIS 512 A HIS 512 1_555 C ZN ZN . A ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 A SG CYS 740 A CYS 740 1_555 G HG HG . A HG 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc7 A OG SER 754 A SER 754 1_555 G HG HG . A HG 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc8 A SG CYS 966 A CYS 966 1_555 E HG HG . A HG 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 A SG CYS 1013 A CYS 1013 1_555 D HG HG . A HG 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc10 B SG CYS 26 B CYS 26 1_555 K HG HG . B HG 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 B O PRO 27 B PRO 27 1_555 K HG HG . B HG 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc12 B SG CYS 499 B CYS 499 1_555 H ZN ZN . B ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc13 B SG CYS 502 B CYS 502 1_555 H ZN ZN . B ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc14 B SG CYS 510 B CYS 510 1_555 H ZN ZN . B ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc15 B ND1 HIS 512 B HIS 512 1_555 H ZN ZN . B ZN 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc16 B SG CYS 740 B CYS 740 1_555 L HG HG . B HG 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc17 B O ALA 752 B ALA 752 1_555 L HG HG . B HG 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.363 ? metalc ? metalc18 B SG CYS 966 B CYS 966 1_555 J HG HG . B HG 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc19 B SG CYS 1013 B CYS 1013 1_555 I HG HG . B HG 2132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1URJ _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2131 2131 ZN ZN . D 3 HG A 1 2132 2132 HG HG . E 3 HG A 1 2133 2133 HG HG . F 3 HG A 1 2134 2134 HG HG . G 3 HG A 1 2135 2135 HG HG . H 2 ZN B 1 2131 2131 ZN ZN . I 3 HG B 1 2132 2132 HG HG . J 3 HG B 1 2133 2133 HG HG . K 3 HG B 1 2134 2134 HG HG . L 3 HG B 1 2135 2135 HG HG . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . M 4 HOH A 47 2047 2047 HOH HOH . M 4 HOH A 48 2048 2048 HOH HOH . M 4 HOH A 49 2049 2049 HOH HOH . M 4 HOH A 50 2050 2050 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . N 4 HOH B 29 2029 2029 HOH HOH . N 4 HOH B 30 2030 2030 HOH HOH . N 4 HOH B 31 2031 2031 HOH HOH . N 4 HOH B 32 2032 2032 HOH HOH . N 4 HOH B 33 2033 2033 HOH HOH . N 4 HOH B 34 2034 2034 HOH HOH . N 4 HOH B 35 2035 2035 HOH HOH . N 4 HOH B 36 2036 2036 HOH HOH . N 4 HOH B 37 2037 2037 HOH HOH . N 4 HOH B 38 2038 2038 HOH HOH . N 4 HOH B 39 2039 2039 HOH HOH . N 4 HOH B 40 2040 2040 HOH HOH . N 4 HOH B 41 2041 2041 HOH HOH . N 4 HOH B 42 2042 2042 HOH HOH . N 4 HOH B 43 2043 2043 HOH HOH . N 4 HOH B 44 2044 2044 HOH HOH . N 4 HOH B 45 2045 2045 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.337 _atom_site.Cartn_y 18.96 _atom_site.Cartn_z 20.049 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 57.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 2132 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #