data_1URV # _model_server_result.job_id fFZqp-X8kRbaZVrn0Mm4gw _model_server_result.datetime_utc '2025-07-17 07:54:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1urv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1172}' # _entry.id 1URV # _exptl.entry_id 1URV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1URV _cell.length_a 48.94 _cell.length_b 70.429 _cell.length_c 100.913 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1URV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 81 1_555 C FE HEM . A HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A NE2 HIS 113 A HIS 113 1_555 C FE HEM . A HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc3 B NE2 HIS 81 B HIS 81 1_555 E FE HEM . B HEM 1172 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 B NE2 HIS 113 B HIS 113 1_555 E FE HEM . B HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 141 n n CHA C4D HEM doub 142 n n CHA HHA HEM sing 143 n n CHB C4A HEM sing 144 n n CHB C1B HEM doub 145 n n CHB HHB HEM sing 146 n n CHC C4B HEM sing 147 n n CHC C1C HEM doub 148 n n CHC HHC HEM sing 149 n n CHD C4C HEM doub 150 n n CHD C1D HEM sing 151 n n CHD HHD HEM sing 152 n n C1A C2A HEM doub 153 n y C1A NA HEM sing 154 n y C2A C3A HEM sing 155 n y C2A CAA HEM sing 156 n n C3A C4A HEM doub 157 n y C3A CMA HEM sing 158 n n C4A NA HEM sing 159 n y CMA HMA HEM sing 160 n n CMA HMAA HEM sing 161 n n CMA HMAB HEM sing 162 n n CAA CBA HEM sing 163 n n CAA HAA HEM sing 164 n n CAA HAAA HEM sing 165 n n CBA CGA HEM sing 166 n n CBA HBA HEM sing 167 n n CBA HBAA HEM sing 168 n n CGA O1A HEM doub 169 n n CGA O2A HEM sing 170 n n C1B C2B HEM sing 171 n n C1B NB HEM sing 172 n n C2B C3B HEM doub 173 n n C2B CMB HEM sing 174 n n C3B C4B HEM sing 175 n n C3B CAB HEM sing 176 n n C4B NB HEM doub 177 n n CMB HMB HEM sing 178 n n CMB HMBA HEM sing 179 n n CMB HMBB HEM sing 180 n n CAB CBB HEM doub 181 n n CAB HAB HEM sing 182 n n CBB HBB HEM sing 183 n n CBB HBBA HEM sing 184 n n C1C C2C HEM sing 185 n y C1C NC HEM sing 186 n y C2C C3C HEM doub 187 n y C2C CMC HEM sing 188 n n C3C C4C HEM sing 189 n y C3C CAC HEM sing 190 n n C4C NC HEM sing 191 n y CMC HMC HEM sing 192 n n CMC HMCA HEM sing 193 n n CMC HMCB HEM sing 194 n n CAC CBC HEM doub 195 n n CAC HAC HEM sing 196 n n CBC HBC HEM sing 197 n n CBC HBCA HEM sing 198 n n C1D C2D HEM sing 199 n n C1D ND HEM doub 200 n n C2D C3D HEM doub 201 n n C2D CMD HEM sing 202 n n C3D C4D HEM sing 203 n n C3D CAD HEM sing 204 n n C4D ND HEM sing 205 n n CMD HMD HEM sing 206 n n CMD HMDA HEM sing 207 n n CMD HMDB HEM sing 208 n n CAD CBD HEM sing 209 n n CAD HAD HEM sing 210 n n CAD HADA HEM sing 211 n n CBD CGD HEM sing 212 n n CBD HBD HEM sing 213 n n CBD HBDA HEM sing 214 n n CGD O1D HEM doub 215 n n CGD O2D HEM sing 216 n n O2A H2A HEM sing 217 n n O2D H2D HEM sing 218 n n FE NA HEM sing 219 n n FE NB HEM sing 220 n n FE NC HEM sing 221 n n FE ND HEM sing 222 n n # _atom_sites.entry_id 1URV _atom_sites.fract_transf_matrix[1][1] 0.020433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1172 1172 HEM HEM . D 3 FC6 A 1 1173 1173 FC6 FC6 . E 2 HEM B 1 1172 1172 HEM HEM . F 3 FC6 B 1 1173 1173 FC6 FC6 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 21.376 -13.434 22.514 1 19.77 ? CHA HEM 1172 B 1 HETATM 2 C CHB HEM . . . E 2 17.123 -11.212 22.959 1 20.32 ? CHB HEM 1172 B 1 HETATM 3 C CHC HEM . . . E 2 18.596 -9.357 27.12 1 16.09 ? CHC HEM 1172 B 1 HETATM 4 C CHD HEM . . . E 2 22.804 -11.713 26.818 1 23.3 ? CHD HEM 1172 B 1 HETATM 5 C C1A HEM . . . E 2 20.104 -12.964 22.278 1 19.48 ? C1A HEM 1172 B 1 HETATM 6 C C2A HEM . . . E 2 19.356 -13.201 21.071 1 20.05 ? C2A HEM 1172 B 1 HETATM 7 C C3A HEM . . . E 2 18.188 -12.578 21.195 1 20.21 ? C3A HEM 1172 B 1 HETATM 8 C C4A HEM . . . E 2 18.169 -11.933 22.48 1 19.06 ? C4A HEM 1172 B 1 HETATM 9 C CMA HEM . . . E 2 17.021 -12.557 20.18 1 20.38 ? CMA HEM 1172 B 1 HETATM 10 C CAA HEM . . . E 2 19.832 -14.018 19.842 1 21.55 ? CAA HEM 1172 B 1 HETATM 11 C CBA HEM . . . E 2 19.975 -15.515 20.133 1 21.68 ? CBA HEM 1172 B 1 HETATM 12 C CGA HEM . . . E 2 18.68 -16.097 20.624 1 22.03 ? CGA HEM 1172 B 1 HETATM 13 O O1A HEM . . . E 2 18.646 -16.366 21.859 1 21.88 ? O1A HEM 1172 B 1 HETATM 14 O O2A HEM . . . E 2 17.722 -16.276 19.8 1 21.61 ? O2A HEM 1172 B 1 HETATM 15 C C1B HEM . . . E 2 17.15 -10.497 24.128 1 20.29 ? C1B HEM 1172 B 1 HETATM 16 C C2B HEM . . . E 2 16.072 -9.689 24.637 1 18.73 ? C2B HEM 1172 B 1 HETATM 17 C C3B HEM . . . E 2 16.491 -9.159 25.794 1 18.76 ? C3B HEM 1172 B 1 HETATM 18 C C4B HEM . . . E 2 17.829 -9.636 26.031 1 18.67 ? C4B HEM 1172 B 1 HETATM 19 C CMB HEM . . . E 2 14.731 -9.521 23.897 1 19.76 ? CMB HEM 1172 B 1 HETATM 20 C CAB HEM . . . E 2 15.739 -8.213 26.761 1 19.59 ? CAB HEM 1172 B 1 HETATM 21 C CBB HEM . . . E 2 14.399 -8.159 26.746 1 21.15 ? CBB HEM 1172 B 1 HETATM 22 C C1C HEM . . . E 2 19.819 -9.872 27.401 1 18.89 ? C1C HEM 1172 B 1 HETATM 23 C C2C HEM . . . E 2 20.558 -9.593 28.612 1 21.96 ? C2C HEM 1172 B 1 HETATM 24 C C3C HEM . . . E 2 21.721 -10.237 28.525 1 23.72 ? C3C HEM 1172 B 1 HETATM 25 C C4C HEM . . . E 2 21.765 -10.93 27.261 1 22.5 ? C4C HEM 1172 B 1 HETATM 26 C CMC HEM . . . E 2 20.039 -8.699 29.768 1 21.53 ? CMC HEM 1172 B 1 HETATM 27 C CAC HEM . . . E 2 22.854 -10.226 29.596 1 27.78 ? CAC HEM 1172 B 1 HETATM 28 C CBC HEM . . . E 2 23.713 -9.217 29.689 1 24.47 ? CBC HEM 1172 B 1 HETATM 29 C C1D HEM . . . E 2 22.838 -12.383 25.643 1 22.76 ? C1D HEM 1172 B 1 HETATM 30 C C2D HEM . . . E 2 23.93 -13.206 25.174 1 25.37 ? C2D HEM 1172 B 1 HETATM 31 C C3D HEM . . . E 2 23.479 -13.743 23.83 1 22.1 ? C3D HEM 1172 B 1 HETATM 32 C C4D HEM . . . E 2 22.166 -13.193 23.621 1 19.02 ? C4D HEM 1172 B 1 HETATM 33 C CMD HEM . . . E 2 25.277 -13.471 25.861 1 26.33 ? CMD HEM 1172 B 1 HETATM 34 C CAD HEM . . . E 2 24.291 -14.635 22.87 1 24.03 ? CAD HEM 1172 B 1 HETATM 35 C CBD HEM . . . E 2 25.239 -13.671 22.153 1 26.21 ? CBD HEM 1172 B 1 HETATM 36 C CGD HEM . . . E 2 26.137 -14.328 21.124 1 28.03 ? CGD HEM 1172 B 1 HETATM 37 O O1D HEM . . . E 2 26.593 -13.601 20.198 1 28.57 ? O1D HEM 1172 B 1 HETATM 38 O O2D HEM . . . E 2 26.409 -15.558 21.212 1 28.79 ? O2D HEM 1172 B 1 HETATM 39 N NA HEM . . . E 2 19.343 -12.19 23.137 1 18.34 ? NA HEM 1172 B 1 HETATM 40 N NB HEM . . . E 2 18.198 -10.462 25.006 1 17.44 ? NB HEM 1172 B 1 HETATM 41 N NC HEM . . . E 2 20.592 -10.681 26.573 1 20.89 ? NC HEM 1172 B 1 HETATM 42 N ND HEM . . . E 2 21.821 -12.417 24.702 1 22.17 ? ND HEM 1172 B 1 HETATM 43 FE FE HEM . . . E 2 19.971 -11.44 24.902 1 20.94 ? FE HEM 1172 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #