data_1USN # _model_server_result.job_id UoqOBQU4BJD7g7IDMMgcSw _model_server_result.datetime_utc '2024-12-27 00:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1usn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":259}' # _entry.id 1USN # _exptl.entry_id 1USN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1USN _cell.length_a 72.12 _cell.length_b 72.12 _cell.length_c 192.06 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1USN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 A,B,C,D,E,F,G,H,I 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 72.12 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 36.06 62.457752 0 4 'crystal symmetry operation' 11_565 x-y+2/3,-y+4/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 83.277003 64.02 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 14 A HIS 96 1_555 G ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A NE2 HIS 14 A HIS 96 3_665 G ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc3 A NE2 HIS 14 A HIS 96 2_655 G ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A O ASP 59 A ASP 141 1_555 E CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 A OD2 ASP 71 A ASP 153 1_555 C ZN ZN . A ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc10 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc11 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc13 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 A O GLY 91 A GLY 173 1_555 E CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 A O ASN 93 A ASN 175 1_555 E CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc16 A OD1 ASP 95 A ASP 177 1_555 E CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc17 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc18 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc19 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc20 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc21 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc22 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc23 A NE2 HIS 119 A HIS 201 1_555 B ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc24 A NE2 HIS 123 A HIS 205 1_555 B ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc25 A NE2 HIS 129 A HIS 211 1_555 B ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc26 B ZN ZN . A ZN 257 1_555 H S2 IN9 . A IN9 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc27 E CA CA . A CA 260 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc28 E CA CA . A CA 260 1_555 I O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc29 F CA CA . A CA 261 1_555 I O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc30 F CA CA . A CA 261 1_555 I O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc31 G ZN ZN . A ZN 262 1_555 I O HOH . A HOH 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc32 G ZN ZN . A ZN 262 1_555 I O HOH . A HOH 263 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc33 G ZN ZN . A ZN 262 1_555 I O HOH . A HOH 263 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1USN _atom_sites.fract_transf_matrix[1][1] 0.013866 _atom_sites.fract_transf_matrix[1][2] 0.008005 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 257 257 ZN ZN . C 2 ZN A 1 258 258 ZN ZN . D 3 CA A 1 259 259 CA CA . E 3 CA A 1 260 260 CA CA . F 3 CA A 1 261 261 CA CA . G 2 ZN A 1 262 262 ZN ZN . H 4 IN9 A 1 300 300 IN9 IN9 . I 5 HOH A 1 263 263 HOH HOH . I 5 HOH A 2 264 264 HOH HOH . I 5 HOH A 3 301 301 HOH HOH . I 5 HOH A 4 302 302 HOH HOH . I 5 HOH A 5 303 303 HOH HOH . I 5 HOH A 6 304 304 HOH HOH . I 5 HOH A 7 305 305 HOH HOH . I 5 HOH A 8 306 306 HOH HOH . I 5 HOH A 9 307 307 HOH HOH . I 5 HOH A 10 308 308 HOH HOH . I 5 HOH A 11 309 309 HOH HOH . I 5 HOH A 12 310 310 HOH HOH . I 5 HOH A 13 311 311 HOH HOH . I 5 HOH A 14 312 312 HOH HOH . I 5 HOH A 15 313 313 HOH HOH . I 5 HOH A 16 314 314 HOH HOH . I 5 HOH A 17 315 315 HOH HOH . I 5 HOH A 18 316 316 HOH HOH . I 5 HOH A 19 317 317 HOH HOH . I 5 HOH A 20 318 318 HOH HOH . I 5 HOH A 21 319 319 HOH HOH . I 5 HOH A 22 320 320 HOH HOH . I 5 HOH A 23 321 321 HOH HOH . I 5 HOH A 24 322 322 HOH HOH . I 5 HOH A 25 323 323 HOH HOH . I 5 HOH A 26 324 324 HOH HOH . I 5 HOH A 27 325 325 HOH HOH . I 5 HOH A 28 326 326 HOH HOH . I 5 HOH A 29 327 327 HOH HOH . I 5 HOH A 30 328 328 HOH HOH . I 5 HOH A 31 329 329 HOH HOH . I 5 HOH A 32 330 330 HOH HOH . I 5 HOH A 33 331 331 HOH HOH . I 5 HOH A 34 332 332 HOH HOH . I 5 HOH A 35 333 333 HOH HOH . I 5 HOH A 36 334 334 HOH HOH . I 5 HOH A 37 335 335 HOH HOH . I 5 HOH A 38 336 336 HOH HOH . I 5 HOH A 39 337 337 HOH HOH . I 5 HOH A 40 338 338 HOH HOH . I 5 HOH A 41 339 339 HOH HOH . I 5 HOH A 42 340 340 HOH HOH . I 5 HOH A 43 341 341 HOH HOH . I 5 HOH A 44 342 342 HOH HOH . I 5 HOH A 45 343 343 HOH HOH . I 5 HOH A 46 344 344 HOH HOH . I 5 HOH A 47 345 345 HOH HOH . I 5 HOH A 48 346 346 HOH HOH . I 5 HOH A 49 347 347 HOH HOH . I 5 HOH A 50 348 348 HOH HOH . I 5 HOH A 51 349 349 HOH HOH . I 5 HOH A 52 350 350 HOH HOH . I 5 HOH A 53 351 351 HOH HOH . I 5 HOH A 54 352 352 HOH HOH . I 5 HOH A 55 353 353 HOH HOH . I 5 HOH A 56 354 354 HOH HOH . I 5 HOH A 57 355 355 HOH HOH . I 5 HOH A 58 356 356 HOH HOH . I 5 HOH A 59 357 357 HOH HOH . I 5 HOH A 60 358 358 HOH HOH . I 5 HOH A 61 359 359 HOH HOH . I 5 HOH A 62 360 360 HOH HOH . I 5 HOH A 63 361 361 HOH HOH . I 5 HOH A 64 362 362 HOH HOH . I 5 HOH A 65 363 363 HOH HOH . I 5 HOH A 66 364 364 HOH HOH . I 5 HOH A 67 365 365 HOH HOH . I 5 HOH A 68 366 366 HOH HOH . I 5 HOH A 69 367 367 HOH HOH . I 5 HOH A 70 368 368 HOH HOH . I 5 HOH A 71 369 369 HOH HOH . I 5 HOH A 72 370 370 HOH HOH . I 5 HOH A 73 371 371 HOH HOH . I 5 HOH A 74 372 372 HOH HOH . I 5 HOH A 75 373 373 HOH HOH . I 5 HOH A 76 374 374 HOH HOH . I 5 HOH A 77 375 375 HOH HOH . I 5 HOH A 78 376 376 HOH HOH . I 5 HOH A 79 377 377 HOH HOH . I 5 HOH A 80 378 378 HOH HOH . I 5 HOH A 81 379 379 HOH HOH . I 5 HOH A 82 380 380 HOH HOH . I 5 HOH A 83 381 381 HOH HOH . I 5 HOH A 84 382 382 HOH HOH . I 5 HOH A 85 383 383 HOH HOH . I 5 HOH A 86 384 384 HOH HOH . I 5 HOH A 87 385 385 HOH HOH . I 5 HOH A 88 386 386 HOH HOH . I 5 HOH A 89 387 387 HOH HOH . I 5 HOH A 90 388 388 HOH HOH . I 5 HOH A 91 389 389 HOH HOH . I 5 HOH A 92 390 390 HOH HOH . I 5 HOH A 93 391 391 HOH HOH . I 5 HOH A 94 392 392 HOH HOH . I 5 HOH A 95 393 393 HOH HOH . I 5 HOH A 96 394 394 HOH HOH . I 5 HOH A 97 395 395 HOH HOH . I 5 HOH A 98 396 396 HOH HOH . I 5 HOH A 99 397 397 HOH HOH . I 5 HOH A 100 398 398 HOH HOH . I 5 HOH A 101 399 399 HOH HOH . I 5 HOH A 102 400 400 HOH HOH . I 5 HOH A 103 401 401 HOH HOH . I 5 HOH A 104 402 402 HOH HOH . I 5 HOH A 105 403 403 HOH HOH . I 5 HOH A 106 404 404 HOH HOH . I 5 HOH A 107 405 405 HOH HOH . I 5 HOH A 108 406 406 HOH HOH . I 5 HOH A 109 407 407 HOH HOH . I 5 HOH A 110 408 408 HOH HOH . I 5 HOH A 111 409 409 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 34.389 _atom_site.Cartn_y 54.751 _atom_site.Cartn_z 38.891 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 259 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #