data_1UT6 # _model_server_result.job_id xov3Ksqdt87nv8j1IgFGKg _model_server_result.datetime_utc '2024-11-02 01:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ut6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1538}' # _entry.id 1UT6 # _exptl.entry_id 1UT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.507 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-9-(1',2',3',4'-TETRAHYDROACRIDINYL)-1,8-DIAMINOOCTANE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UT6 _cell.length_a 111.193 _cell.length_b 111.193 _cell.length_c 136.853 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 136.853 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 B C1 NAG . A NAG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 A ND2 ASN 416 A ASN 416 1_555 C C1 NAG . A NAG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C21 H33 N3 2' _chem_comp.formula_weight 327.507 _chem_comp.id A8N _chem_comp.mon_nstd_flag . _chem_comp.name "N-9-(1',2',3',4'-TETRAHYDROACRIDINYL)-1,8-DIAMINOOCTANE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (9S)-9-[(8-AMMONIOOCTYL)AMINO]-1,2,3,4,9,10-HEXAHYDROACRIDINIUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A8N doub 1 n y C1 C6 A8N sing 2 n y C1 H1 A8N sing 3 n n C2 C3 A8N sing 4 n y C2 H2 A8N sing 5 n n C3 C4 A8N doub 6 n y C3 H3 A8N sing 7 n n C4 C5 A8N sing 8 n y C4 C7 A8N sing 9 n y C5 C6 A8N doub 10 n y C5 N10 A8N sing 11 n y C6 H6 A8N sing 12 n n C7 C8 A8N doub 13 n y C7 N11 A8N sing 14 n n C8 C9 A8N sing 15 n y C8 C13 A8N sing 16 n n C9 N10 A8N doub 17 n y C9 C16 A8N sing 18 n n N10 H101 A8N sing 19 n n N11 C17 A8N sing 20 n n N11 H11 A8N sing 21 n n C13 C14 A8N sing 22 n n C13 H131 A8N sing 23 n n C13 H132 A8N sing 24 n n C14 C15 A8N sing 25 n n C14 H141 A8N sing 26 n n C14 H142 A8N sing 27 n n C15 C16 A8N sing 28 n n C15 H151 A8N sing 29 n n C15 H152 A8N sing 30 n n C16 H161 A8N sing 31 n n C16 H162 A8N sing 32 n n C17 C18 A8N sing 33 n n C17 H171 A8N sing 34 n n C17 H172 A8N sing 35 n n C18 C19 A8N sing 36 n n C18 H181 A8N sing 37 n n C18 H182 A8N sing 38 n n C19 C20 A8N sing 39 n n C19 H191 A8N sing 40 n n C19 H192 A8N sing 41 n n C20 C21 A8N sing 42 n n C20 H201 A8N sing 43 n n C20 H202 A8N sing 44 n n C21 C22 A8N sing 45 n n C21 H211 A8N sing 46 n n C21 H212 A8N sing 47 n n C22 C23 A8N sing 48 n n C22 H221 A8N sing 49 n n C22 H222 A8N sing 50 n n C23 C24 A8N sing 51 n n C23 H231 A8N sing 52 n n C23 H232 A8N sing 53 n n C24 N25 A8N sing 54 n n C24 H241 A8N sing 55 n n C24 H242 A8N sing 56 n n N25 H251 A8N sing 57 n n N25 H252 A8N sing 58 n n N25 H253 A8N sing 59 n n # _atom_sites.entry_id 1UT6 _atom_sites.fract_transf_matrix[1][1] 0.008993 _atom_sites.fract_transf_matrix[1][2] 0.005192 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1536 1536 NAG NAG . C 2 NAG A 1 1537 1537 NAG NAG . D 3 A8N A 1 1538 1538 A8N A8N . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . E 4 HOH A 74 2074 2074 HOH HOH . E 4 HOH A 75 2075 2075 HOH HOH . E 4 HOH A 76 2076 2076 HOH HOH . E 4 HOH A 77 2077 2077 HOH HOH . E 4 HOH A 78 2078 2078 HOH HOH . E 4 HOH A 79 2079 2079 HOH HOH . E 4 HOH A 80 2080 2080 HOH HOH . E 4 HOH A 81 2081 2081 HOH HOH . E 4 HOH A 82 2082 2082 HOH HOH . E 4 HOH A 83 2083 2083 HOH HOH . E 4 HOH A 84 2084 2084 HOH HOH . E 4 HOH A 85 2085 2085 HOH HOH . E 4 HOH A 86 2086 2086 HOH HOH . E 4 HOH A 87 2087 2087 HOH HOH . E 4 HOH A 88 2088 2088 HOH HOH . E 4 HOH A 89 2089 2089 HOH HOH . E 4 HOH A 90 2090 2090 HOH HOH . E 4 HOH A 91 2091 2091 HOH HOH . E 4 HOH A 92 2092 2092 HOH HOH . E 4 HOH A 93 2093 2093 HOH HOH . E 4 HOH A 94 2094 2094 HOH HOH . E 4 HOH A 95 2095 2095 HOH HOH . E 4 HOH A 96 2096 2096 HOH HOH . E 4 HOH A 97 2097 2097 HOH HOH . E 4 HOH A 98 2098 2098 HOH HOH . E 4 HOH A 99 2099 2099 HOH HOH . E 4 HOH A 100 2100 2100 HOH HOH . E 4 HOH A 101 2101 2101 HOH HOH . E 4 HOH A 102 2102 2102 HOH HOH . E 4 HOH A 103 2103 2103 HOH HOH . E 4 HOH A 104 2104 2104 HOH HOH . E 4 HOH A 105 2105 2105 HOH HOH . E 4 HOH A 106 2106 2106 HOH HOH . E 4 HOH A 107 2107 2107 HOH HOH . E 4 HOH A 108 2108 2108 HOH HOH . E 4 HOH A 109 2109 2109 HOH HOH . E 4 HOH A 110 2110 2110 HOH HOH . E 4 HOH A 111 2111 2111 HOH HOH . E 4 HOH A 112 2112 2112 HOH HOH . E 4 HOH A 113 2113 2113 HOH HOH . E 4 HOH A 114 2114 2114 HOH HOH . E 4 HOH A 115 2115 2115 HOH HOH . E 4 HOH A 116 2116 2116 HOH HOH . E 4 HOH A 117 2117 2117 HOH HOH . E 4 HOH A 118 2118 2118 HOH HOH . E 4 HOH A 119 2119 2119 HOH HOH . E 4 HOH A 120 2120 2120 HOH HOH . E 4 HOH A 121 2121 2121 HOH HOH . E 4 HOH A 122 2122 2122 HOH HOH . E 4 HOH A 123 2123 2123 HOH HOH . E 4 HOH A 124 2124 2124 HOH HOH . E 4 HOH A 125 2125 2125 HOH HOH . E 4 HOH A 126 2126 2126 HOH HOH . E 4 HOH A 127 2127 2127 HOH HOH . E 4 HOH A 128 2128 2128 HOH HOH . E 4 HOH A 129 2129 2129 HOH HOH . E 4 HOH A 130 2130 2130 HOH HOH . E 4 HOH A 131 2131 2131 HOH HOH . E 4 HOH A 132 2132 2132 HOH HOH . E 4 HOH A 133 2133 2133 HOH HOH . E 4 HOH A 134 2134 2134 HOH HOH . E 4 HOH A 135 2135 2135 HOH HOH . E 4 HOH A 136 2136 2136 HOH HOH . E 4 HOH A 137 2137 2137 HOH HOH . E 4 HOH A 138 2138 2138 HOH HOH . E 4 HOH A 139 2139 2139 HOH HOH . E 4 HOH A 140 2140 2140 HOH HOH . E 4 HOH A 141 2141 2141 HOH HOH . E 4 HOH A 142 2142 2142 HOH HOH . E 4 HOH A 143 2143 2143 HOH HOH . E 4 HOH A 144 2144 2144 HOH HOH . E 4 HOH A 145 2145 2145 HOH HOH . E 4 HOH A 146 2146 2146 HOH HOH . E 4 HOH A 147 2147 2147 HOH HOH . E 4 HOH A 148 2148 2148 HOH HOH . E 4 HOH A 149 2149 2149 HOH HOH . E 4 HOH A 150 2150 2150 HOH HOH . E 4 HOH A 151 2151 2151 HOH HOH . E 4 HOH A 152 2152 2152 HOH HOH . E 4 HOH A 153 2153 2153 HOH HOH . E 4 HOH A 154 2154 2154 HOH HOH . E 4 HOH A 155 2155 2155 HOH HOH . E 4 HOH A 156 2156 2156 HOH HOH . E 4 HOH A 157 2157 2157 HOH HOH . E 4 HOH A 158 2158 2158 HOH HOH . E 4 HOH A 159 2159 2159 HOH HOH . E 4 HOH A 160 2160 2160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A8N . . . D 3 6.62 70.239 68.045 1 45.06 ? C1 A8N 1538 A 1 HETATM 2 C C2 A8N . . . D 3 5.356 69.925 68.626 1 47.36 ? C2 A8N 1538 A 1 HETATM 3 C C3 A8N . . . D 3 4.335 69.344 67.86 1 46.66 ? C3 A8N 1538 A 1 HETATM 4 C C4 A8N . . . D 3 4.506 69.039 66.452 1 47.32 ? C4 A8N 1538 A 1 HETATM 5 C C5 A8N . . . D 3 5.785 69.371 65.882 1 46.83 ? C5 A8N 1538 A 1 HETATM 6 C C6 A8N . . . D 3 6.833 69.97 66.697 1 47.51 ? C6 A8N 1538 A 1 HETATM 7 C C7 A8N . . . D 3 3.486 68.414 65.598 1 48.57 ? C7 A8N 1538 A 1 HETATM 8 C C8 A8N . . . D 3 3.75 68.222 64.205 1 46.84 ? C8 A8N 1538 A 1 HETATM 9 C C9 A8N . . . D 3 5.083 68.57 63.702 1 46.32 ? C9 A8N 1538 A 1 HETATM 10 N N10 A8N . . . D 3 6.055 69.112 64.509 1 45.62 ? N10 A8N 1538 A 1 HETATM 11 N N11 A8N . . . D 3 2.249 68.011 66.163 1 52.85 ? N11 A8N 1538 A 1 HETATM 12 C C13 A8N . . . D 3 2.721 67.725 63.179 1 46.58 ? C13 A8N 1538 A 1 HETATM 13 C C14 A8N . . . D 3 3.097 67.952 61.681 1 47.46 ? C14 A8N 1538 A 1 HETATM 14 C C15 A8N . . . D 3 4.551 67.458 61.423 1 48.29 ? C15 A8N 1538 A 1 HETATM 15 C C16 A8N . . . D 3 5.531 68.369 62.241 1 46.97 ? C16 A8N 1538 A 1 HETATM 16 C C17 A8N . . . D 3 1.983 66.659 66.723 1 58.12 ? C17 A8N 1538 A 1 HETATM 17 C C18 A8N . . . D 3 0.853 66.677 67.78 1 60.39 ? C18 A8N 1538 A 1 HETATM 18 C C19 A8N . . . D 3 1.214 65.905 69.073 1 62.72 ? C19 A8N 1538 A 1 HETATM 19 C C20 A8N . . . D 3 0.08 64.95 69.539 1 63.95 ? C20 A8N 1538 A 1 HETATM 20 C C21 A8N . . . D 3 0.585 63.549 69.935 1 65.64 ? C21 A8N 1538 A 1 HETATM 21 C C22 A8N . . . D 3 0.07 63.125 71.332 1 67.52 ? C22 A8N 1538 A 1 HETATM 22 C C23 A8N . . . D 3 -0.66 61.765 71.294 1 67.4 ? C23 A8N 1538 A 1 HETATM 23 C C24 A8N . . . D 3 -0.144 60.782 72.352 1 67.53 ? C24 A8N 1538 A 1 HETATM 24 N N25 A8N . . . D 3 -1.356 60.344 73.146 1 67.11 ? N25 A8N 1538 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #