data_1UTB
#
_model_server_result.job_id            vbjVk7QybTODE8TOLxGcaQ 
_model_server_result.datetime_utc      '2024-11-22 17:34:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1utb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1304}' 
#
_entry.id    1UTB 
#
_exptl.entry_id    1UTB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1UTB 
_cell.length_a            107.148 
_cell.length_b            107.148 
_cell.length_c            296.654 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UTB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 107.148 0 148.327 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     1UTB 
_atom_sites.fract_transf_matrix[1][1]    0.009333 
_atom_sites.fract_transf_matrix[1][2]    0.005388 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010777 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1303 1303 GOL GOL . 
D 3 GOL A 1 1304 1304 GOL GOL . 
E 4 ACT A 1 1305 1305 ACT ACT . 
F 3 GOL B 1 1302 1302 GOL GOL . 
G 3 GOL B 1 1303 1303 GOL GOL . 
H 3 GOL B 1 1304 1304 GOL GOL . 
I 4 ACT B 1 1305 1305 ACT ACT . 
J 5 HOH A 1 2001 2001 HOH HOH . 
J 5 HOH A 2 2002 2002 HOH HOH . 
J 5 HOH A 3 2003 2003 HOH HOH . 
J 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH A 5 2005 2005 HOH HOH . 
J 5 HOH A 6 2006 2006 HOH HOH . 
J 5 HOH A 7 2007 2007 HOH HOH . 
J 5 HOH A 8 2008 2008 HOH HOH . 
J 5 HOH A 9 2009 2009 HOH HOH . 
J 5 HOH A 10 2010 2010 HOH HOH . 
J 5 HOH A 11 2011 2011 HOH HOH . 
J 5 HOH A 12 2012 2012 HOH HOH . 
J 5 HOH A 13 2013 2013 HOH HOH . 
J 5 HOH A 14 2014 2014 HOH HOH . 
J 5 HOH A 15 2015 2015 HOH HOH . 
J 5 HOH A 16 2016 2016 HOH HOH . 
J 5 HOH A 17 2017 2017 HOH HOH . 
J 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH A 19 2019 2019 HOH HOH . 
J 5 HOH A 20 2020 2020 HOH HOH . 
J 5 HOH A 21 2021 2021 HOH HOH . 
J 5 HOH A 22 2022 2022 HOH HOH . 
J 5 HOH A 23 2023 2023 HOH HOH . 
J 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH A 25 2025 2025 HOH HOH . 
J 5 HOH A 26 2026 2026 HOH HOH . 
J 5 HOH A 27 2027 2027 HOH HOH . 
J 5 HOH A 28 2028 2028 HOH HOH . 
J 5 HOH A 29 2029 2029 HOH HOH . 
J 5 HOH A 30 2030 2030 HOH HOH . 
J 5 HOH A 31 2031 2031 HOH HOH . 
J 5 HOH A 32 2032 2032 HOH HOH . 
J 5 HOH A 33 2033 2033 HOH HOH . 
J 5 HOH A 34 2034 2034 HOH HOH . 
J 5 HOH A 35 2035 2035 HOH HOH . 
J 5 HOH A 36 2036 2036 HOH HOH . 
J 5 HOH A 37 2037 2037 HOH HOH . 
J 5 HOH A 38 2038 2038 HOH HOH . 
J 5 HOH A 39 2039 2039 HOH HOH . 
J 5 HOH A 40 2040 2040 HOH HOH . 
J 5 HOH A 41 2041 2041 HOH HOH . 
J 5 HOH A 42 2042 2042 HOH HOH . 
J 5 HOH A 43 2043 2043 HOH HOH . 
J 5 HOH A 44 2044 2044 HOH HOH . 
J 5 HOH A 45 2045 2045 HOH HOH . 
J 5 HOH A 46 2046 2046 HOH HOH . 
J 5 HOH A 47 2047 2047 HOH HOH . 
J 5 HOH A 48 2048 2048 HOH HOH . 
J 5 HOH A 49 2049 2049 HOH HOH . 
J 5 HOH A 50 2050 2050 HOH HOH . 
J 5 HOH A 51 2051 2051 HOH HOH . 
J 5 HOH A 52 2052 2052 HOH HOH . 
J 5 HOH A 53 2053 2053 HOH HOH . 
J 5 HOH A 54 2054 2054 HOH HOH . 
J 5 HOH A 55 2055 2055 HOH HOH . 
J 5 HOH A 56 2056 2056 HOH HOH . 
J 5 HOH A 57 2057 2057 HOH HOH . 
J 5 HOH A 58 2058 2058 HOH HOH . 
J 5 HOH A 59 2059 2059 HOH HOH . 
K 5 HOH B 1 2001 2001 HOH HOH . 
K 5 HOH B 2 2002 2002 HOH HOH . 
K 5 HOH B 3 2003 2003 HOH HOH . 
K 5 HOH B 4 2004 2004 HOH HOH . 
K 5 HOH B 5 2005 2005 HOH HOH . 
K 5 HOH B 6 2006 2006 HOH HOH . 
K 5 HOH B 7 2007 2007 HOH HOH . 
K 5 HOH B 8 2008 2008 HOH HOH . 
K 5 HOH B 9 2009 2009 HOH HOH . 
K 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH B 11 2011 2011 HOH HOH . 
K 5 HOH B 12 2012 2012 HOH HOH . 
K 5 HOH B 13 2013 2013 HOH HOH . 
K 5 HOH B 14 2014 2014 HOH HOH . 
K 5 HOH B 15 2015 2015 HOH HOH . 
K 5 HOH B 16 2016 2016 HOH HOH . 
K 5 HOH B 17 2017 2017 HOH HOH . 
K 5 HOH B 18 2018 2018 HOH HOH . 
K 5 HOH B 19 2019 2019 HOH HOH . 
K 5 HOH B 20 2020 2020 HOH HOH . 
K 5 HOH B 21 2021 2021 HOH HOH . 
K 5 HOH B 22 2022 2022 HOH HOH . 
K 5 HOH B 23 2023 2023 HOH HOH . 
K 5 HOH B 24 2024 2024 HOH HOH . 
K 5 HOH B 25 2025 2025 HOH HOH . 
K 5 HOH B 26 2026 2026 HOH HOH . 
K 5 HOH B 27 2027 2027 HOH HOH . 
K 5 HOH B 28 2028 2028 HOH HOH . 
K 5 HOH B 29 2029 2029 HOH HOH . 
K 5 HOH B 30 2030 2030 HOH HOH . 
K 5 HOH B 31 2031 2031 HOH HOH . 
K 5 HOH B 32 2032 2032 HOH HOH . 
K 5 HOH B 33 2033 2033 HOH HOH . 
K 5 HOH B 34 2034 2034 HOH HOH . 
K 5 HOH B 35 2035 2035 HOH HOH . 
K 5 HOH B 36 2036 2036 HOH HOH . 
K 5 HOH B 37 2037 2037 HOH HOH . 
K 5 HOH B 38 2038 2038 HOH HOH . 
K 5 HOH B 39 2039 2039 HOH HOH . 
K 5 HOH B 40 2040 2040 HOH HOH . 
K 5 HOH B 41 2041 2041 HOH HOH . 
K 5 HOH B 42 2042 2042 HOH HOH . 
K 5 HOH B 43 2043 2043 HOH HOH . 
K 5 HOH B 44 2044 2044 HOH HOH . 
K 5 HOH B 45 2045 2045 HOH HOH . 
K 5 HOH B 46 2046 2046 HOH HOH . 
K 5 HOH B 47 2047 2047 HOH HOH . 
K 5 HOH B 48 2048 2048 HOH HOH . 
K 5 HOH B 49 2049 2049 HOH HOH . 
K 5 HOH B 50 2050 2050 HOH HOH . 
K 5 HOH B 51 2051 2051 HOH HOH . 
K 5 HOH B 52 2052 2052 HOH HOH . 
K 5 HOH B 53 2053 2053 HOH HOH . 
K 5 HOH B 54 2054 2054 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 64.68 -2.93 77.886 1 58.87 ? C1 GOL 1304 B 1 
HETATM 2 O O1 GOL . . . H 3 65.1 -4.221 78.26 1 61.82 ? O1 GOL 1304 B 1 
HETATM 3 C C2 GOL . . . H 3 64.834 -1.984 79.059 1 57.28 ? C2 GOL 1304 B 1 
HETATM 4 O O2 GOL . . . H 3 64.672 -0.705 78.499 1 55.13 ? O2 GOL 1304 B 1 
HETATM 5 C C3 GOL . . . H 3 63.812 -2.319 80.164 1 57.7 ? C3 GOL 1304 B 1 
HETATM 6 O O3 GOL . . . H 3 64.302 -2.346 81.497 1 55.5 ? O3 GOL 1304 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#