data_1UTL # _model_server_result.job_id 4UIRlAEdLJG9ZYY-Kql5tg _model_server_result.datetime_utc '2024-12-17 08:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1utl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":248}' # _entry.id 1UTL # _exptl.entry_id 1UTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UTL _cell.length_a 44.944 _cell.length_b 48.269 _cell.length_c 83.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 M CYS 22 1_555 A SG CYS 156 M CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 45 M CYS 42 1_555 A SG CYS 61 M CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 129 M CYS 128 1_555 A SG CYS 229 M CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 136 M CYS 136 1_555 A SG CYS 202 M CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 167 M CYS 168 1_555 A SG CYS 181 M CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 192 M CYS 191 1_555 A SG CYS 216 M CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OE1 GLU 72 M GLU 70 1_555 C CA CA . M CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A O ASN 74 M ASN 72 1_555 C CA CA . M CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 A O VAL 77 M VAL 75 1_555 C CA CA . M CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OE2 GLU 79 M GLU 77 1_555 C CA CA . M CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OE2 GLU 82 M GLU 80 1_555 C CA CA . M CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc6 C CA CA . M CA 247 1_555 E O HOH . M HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 1UTL _atom_sites.fract_transf_matrix[1][1] 0.02225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRA M 1 246 246 PRA PRA . C 3 CA M 1 247 247 CA CA . D 4 MPD M 1 248 248 MPD MPD . E 5 HOH M 1 2001 2001 HOH HOH . E 5 HOH M 2 2002 2002 HOH HOH . E 5 HOH M 3 2003 2003 HOH HOH . E 5 HOH M 4 2004 2004 HOH HOH . E 5 HOH M 5 2005 2005 HOH HOH . E 5 HOH M 6 2006 2006 HOH HOH . E 5 HOH M 7 2007 2007 HOH HOH . E 5 HOH M 8 2008 2008 HOH HOH . E 5 HOH M 9 2009 2009 HOH HOH . E 5 HOH M 10 2010 2010 HOH HOH . E 5 HOH M 11 2011 2011 HOH HOH . E 5 HOH M 12 2012 2012 HOH HOH . E 5 HOH M 13 2013 2013 HOH HOH . E 5 HOH M 14 2014 2014 HOH HOH . E 5 HOH M 15 2015 2015 HOH HOH . E 5 HOH M 16 2016 2016 HOH HOH . E 5 HOH M 17 2017 2017 HOH HOH . E 5 HOH M 18 2018 2018 HOH HOH . E 5 HOH M 19 2019 2019 HOH HOH . E 5 HOH M 20 2020 2020 HOH HOH . E 5 HOH M 21 2021 2021 HOH HOH . E 5 HOH M 22 2022 2022 HOH HOH . E 5 HOH M 23 2023 2023 HOH HOH . E 5 HOH M 24 2024 2024 HOH HOH . E 5 HOH M 25 2025 2025 HOH HOH . E 5 HOH M 26 2026 2026 HOH HOH . E 5 HOH M 27 2027 2027 HOH HOH . E 5 HOH M 28 2028 2028 HOH HOH . E 5 HOH M 29 2029 2029 HOH HOH . E 5 HOH M 30 2030 2030 HOH HOH . E 5 HOH M 31 2031 2031 HOH HOH . E 5 HOH M 32 2032 2032 HOH HOH . E 5 HOH M 33 2033 2033 HOH HOH . E 5 HOH M 34 2034 2034 HOH HOH . E 5 HOH M 35 2035 2035 HOH HOH . E 5 HOH M 36 2036 2036 HOH HOH . E 5 HOH M 37 2037 2037 HOH HOH . E 5 HOH M 38 2038 2038 HOH HOH . E 5 HOH M 39 2039 2039 HOH HOH . E 5 HOH M 40 2040 2040 HOH HOH . E 5 HOH M 41 2041 2041 HOH HOH . E 5 HOH M 42 2042 2042 HOH HOH . E 5 HOH M 43 2043 2043 HOH HOH . E 5 HOH M 44 2044 2044 HOH HOH . E 5 HOH M 45 2045 2045 HOH HOH . E 5 HOH M 46 2046 2046 HOH HOH . E 5 HOH M 47 2047 2047 HOH HOH . E 5 HOH M 48 2048 2048 HOH HOH . E 5 HOH M 49 2049 2049 HOH HOH . E 5 HOH M 50 2050 2050 HOH HOH . E 5 HOH M 51 2051 2051 HOH HOH . E 5 HOH M 52 2052 2052 HOH HOH . E 5 HOH M 53 2053 2053 HOH HOH . E 5 HOH M 54 2054 2054 HOH HOH . E 5 HOH M 55 2055 2055 HOH HOH . E 5 HOH M 56 2056 2056 HOH HOH . E 5 HOH M 57 2057 2057 HOH HOH . E 5 HOH M 58 2058 2058 HOH HOH . E 5 HOH M 59 2059 2059 HOH HOH . E 5 HOH M 60 2060 2060 HOH HOH . E 5 HOH M 61 2061 2061 HOH HOH . E 5 HOH M 62 2062 2062 HOH HOH . E 5 HOH M 63 2063 2063 HOH HOH . E 5 HOH M 64 2064 2064 HOH HOH . E 5 HOH M 65 2065 2065 HOH HOH . E 5 HOH M 66 2066 2066 HOH HOH . E 5 HOH M 67 2067 2067 HOH HOH . E 5 HOH M 68 2068 2068 HOH HOH . E 5 HOH M 69 2069 2069 HOH HOH . E 5 HOH M 70 2070 2070 HOH HOH . E 5 HOH M 71 2071 2071 HOH HOH . E 5 HOH M 72 2072 2072 HOH HOH . E 5 HOH M 73 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 17.933 28.435 46.563 1 21.47 ? C1 MPD 248 M 1 HETATM 2 C C2 MPD . . . D 4 16.842 27.389 46.427 1 20.57 ? C2 MPD 248 M 1 HETATM 3 O O2 MPD . . . D 4 15.8 28.012 45.553 1 24.06 ? O2 MPD 248 M 1 HETATM 4 C CM MPD . . . D 4 17.382 26.145 45.741 1 21.72 ? CM MPD 248 M 1 HETATM 5 C C3 MPD . . . D 4 16.254 27.095 47.834 1 19.4 ? C3 MPD 248 M 1 HETATM 6 C C4 MPD . . . D 4 15.687 28.193 48.606 1 18.23 ? C4 MPD 248 M 1 HETATM 7 O O4 MPD . . . D 4 14.605 28.752 47.827 1 17.5 ? O4 MPD 248 M 1 HETATM 8 C C5 MPD . . . D 4 15.149 27.712 49.976 1 16.67 ? C5 MPD 248 M 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #