data_1UU8 # _model_server_result.job_id zxZCtvMQjM-65gFD58xIXA _model_server_result.datetime_utc '2024-11-07 01:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1uu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1368}' # _entry.id 1UU8 # _exptl.entry_id 1UU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.484 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1UU8 _cell.length_a 122.397 _cell.length_b 122.397 _cell.length_c 48.016 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 190 A ASN 240 1_555 A N SEP 191 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 191 A SEP 241 1_555 A N PHE 192 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C25 H24 N4 O2' _chem_comp.formula_weight 412.484 _chem_comp.id BI1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RBT205 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD NBC BI1 sing 70 n n CBD HBD1 BI1 sing 71 n n CBD HBD2 BI1 sing 72 n n CBD HBD3 BI1 sing 73 n n NBC CBE BI1 sing 74 n n NBC CBB BI1 sing 75 n n CBE HBE1 BI1 sing 76 n n CBE HBE2 BI1 sing 77 n n CBE HBE3 BI1 sing 78 n n CBB CBA BI1 sing 79 n n CBB HBB1 BI1 sing 80 n n CBB HBB2 BI1 sing 81 n n CBA CAY BI1 sing 82 n n CBA HBA1 BI1 sing 83 n n CBA HBA2 BI1 sing 84 n n CAY NAH BI1 sing 85 n n CAY HAY1 BI1 sing 86 n n CAY HAY2 BI1 sing 87 n n NAH CAW BI1 sing 88 n y NAH CAE BI1 sing 89 n y CAW CAG BI1 doub 90 n y CAW HAW BI1 sing 91 n n CAE CAF BI1 sing 92 n y CAE CAD BI1 doub 93 n y CAF CAA BI1 doub 94 n y CAF HAF BI1 sing 95 n n CAA CAB BI1 sing 96 n y CAA HAA BI1 sing 97 n n CAB CAC BI1 doub 98 n y CAB HAB BI1 sing 99 n n CAC CAD BI1 sing 100 n y CAC HAC BI1 sing 101 n n CAD CAG BI1 sing 102 n y CAG CAI BI1 sing 103 n n CAI CAT BI1 sing 104 n n CAI CAJ BI1 doub 105 n n CAT OAZ BI1 doub 106 n n CAT NAU BI1 sing 107 n n NAU CAV BI1 sing 108 n n NAU HAU BI1 sing 109 n n CAV OAX BI1 doub 110 n n CAV CAJ BI1 sing 111 n n CAJ CAK BI1 sing 112 n n CAK CAM BI1 sing 113 n y CAK CAL BI1 doub 114 n y CAM CAP BI1 sing 115 n y CAM CAN BI1 doub 116 n y CAP CAQ BI1 doub 117 n y CAP HAP BI1 sing 118 n n CAQ CAR BI1 sing 119 n y CAQ HAQ BI1 sing 120 n n CAR CAS BI1 doub 121 n y CAR HAR BI1 sing 122 n n CAS CAN BI1 sing 123 n y CAS HAS BI1 sing 124 n n CAN NAO BI1 sing 125 n y NAO CAL BI1 sing 126 n y NAO HAO BI1 sing 127 n n CAL HAL BI1 sing 128 n n # _atom_sites.entry_id 1UU8 _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0.004717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1358 1358 GOL GOL . C 2 GOL A 1 1359 1359 GOL GOL . D 2 GOL A 1 1360 1360 GOL GOL . E 2 GOL A 1 1361 1361 GOL GOL . F 2 GOL A 1 1362 1362 GOL GOL . G 2 GOL A 1 1363 1363 GOL GOL . H 2 GOL A 1 1364 1364 GOL GOL . I 3 SO4 A 1 1365 1365 SO4 SO4 . J 3 SO4 A 1 1366 1366 SO4 SO4 . K 3 SO4 A 1 1367 1367 SO4 SO4 . L 4 BI1 A 1 1368 1368 BI1 BI1 . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . M 5 HOH A 39 2039 2039 HOH HOH . M 5 HOH A 40 2040 2040 HOH HOH . M 5 HOH A 41 2041 2041 HOH HOH . M 5 HOH A 42 2042 2042 HOH HOH . M 5 HOH A 43 2043 2043 HOH HOH . M 5 HOH A 44 2044 2044 HOH HOH . M 5 HOH A 45 2045 2045 HOH HOH . M 5 HOH A 46 2046 2046 HOH HOH . M 5 HOH A 47 2047 2047 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBD BI1 . . . L 4 21.211 82.732 28.917 1 68.53 ? CBD BI1 1368 A 1 HETATM 2 N NBC BI1 . . . L 4 22.013 83.172 27.767 1 68.16 ? NBC BI1 1368 A 1 HETATM 3 C CBE BI1 . . . L 4 21.324 83.321 26.475 1 68.44 ? CBE BI1 1368 A 1 HETATM 4 C CBB BI1 . . . L 4 23.443 82.811 27.794 1 65.34 ? CBB BI1 1368 A 1 HETATM 5 C CBA BI1 . . . L 4 24.033 82.473 26.421 1 61.14 ? CBA BI1 1368 A 1 HETATM 6 C CAY BI1 . . . L 4 23.599 81.101 25.894 1 53.65 ? CAY BI1 1368 A 1 HETATM 7 N NAH BI1 . . . L 4 24.345 79.975 26.479 1 50.74 ? NAH BI1 1368 A 1 HETATM 8 C CAW BI1 . . . L 4 25.627 80.029 26.854 1 50.91 ? CAW BI1 1368 A 1 HETATM 9 C CAE BI1 . . . L 4 23.838 78.75 26.607 1 49.51 ? CAE BI1 1368 A 1 HETATM 10 C CAF BI1 . . . L 4 22.6 78.179 26.329 1 49.09 ? CAF BI1 1368 A 1 HETATM 11 C CAA BI1 . . . L 4 22.415 76.816 26.539 1 50.27 ? CAA BI1 1368 A 1 HETATM 12 C CAB BI1 . . . L 4 23.461 76.036 27.026 1 50.31 ? CAB BI1 1368 A 1 HETATM 13 C CAC BI1 . . . L 4 24.695 76.618 27.306 1 49.26 ? CAC BI1 1368 A 1 HETATM 14 C CAD BI1 . . . L 4 24.886 77.979 27.095 1 48.06 ? CAD BI1 1368 A 1 HETATM 15 C CAG BI1 . . . L 4 25.991 78.806 27.239 1 49.01 ? CAG BI1 1368 A 1 HETATM 16 C CAI BI1 . . . L 4 27.307 78.54 27.612 1 47.54 ? CAI BI1 1368 A 1 HETATM 17 C CAT BI1 . . . L 4 28.014 77.401 27.233 1 46.36 ? CAT BI1 1368 A 1 HETATM 18 O OAZ BI1 . . . L 4 27.604 76.438 26.591 1 44.28 ? OAZ BI1 1368 A 1 HETATM 19 N NAU BI1 . . . L 4 29.257 77.583 27.677 1 46.45 ? NAU BI1 1368 A 1 HETATM 20 C CAV BI1 . . . L 4 29.433 78.74 28.314 1 47.61 ? CAV BI1 1368 A 1 HETATM 21 O OAX BI1 . . . L 4 30.481 79.168 28.791 1 47.9 ? OAX BI1 1368 A 1 HETATM 22 C CAJ BI1 . . . L 4 28.192 79.369 28.292 1 48.3 ? CAJ BI1 1368 A 1 HETATM 23 C CAK BI1 . . . L 4 27.916 80.588 28.91 1 49.21 ? CAK BI1 1368 A 1 HETATM 24 C CAM BI1 . . . L 4 26.809 81.066 29.592 1 47.19 ? CAM BI1 1368 A 1 HETATM 25 C CAP BI1 . . . L 4 25.564 80.518 29.89 1 47.05 ? CAP BI1 1368 A 1 HETATM 26 C CAQ BI1 . . . L 4 24.627 81.267 30.596 1 49.31 ? CAQ BI1 1368 A 1 HETATM 27 C CAR BI1 . . . L 4 24.93 82.562 31.01 1 47.76 ? CAR BI1 1368 A 1 HETATM 28 C CAS BI1 . . . L 4 26.175 83.11 30.719 1 48.79 ? CAS BI1 1368 A 1 HETATM 29 C CAN BI1 . . . L 4 27.106 82.355 30.01 1 48.17 ? CAN BI1 1368 A 1 HETATM 30 N NAO BI1 . . . L 4 28.346 82.594 29.583 1 49.87 ? NAO BI1 1368 A 1 HETATM 31 C CAL BI1 . . . L 4 28.843 81.543 28.925 1 50.14 ? CAL BI1 1368 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #