data_1UX0
#
_model_server_result.job_id            f_VpXpx-bNuOjT4WQtaA6w 
_model_server_result.datetime_utc      '2024-10-12 06:19:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ux0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":138}' 
#
_entry.id    1UX0 
#
_exptl.entry_id    1UX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.218 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TETRAHYDRODEOXYURIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.64 
_cell.angle_gamma         90 
_cell.entry_id            1UX0 
_cell.length_a            74.88 
_cell.length_b            66.098 
_cell.length_c            55.514 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 26.836492 0 100.095145 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 53 A CYS 53 1_555 D ZN ZN . A ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 A SG CYS 86 A CYS 86 1_555 D ZN ZN . A ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc3 A SG CYS 89 A CYS 89 1_555 D ZN ZN . A ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc4 C O4 THU . A THU 138 1_555 D ZN ZN . A ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc5 B SG CYS 53 B CYS 53 1_555 F ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc6 B SG CYS 86 B CYS 86 1_555 F ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc7 B SG CYS 89 B CYS 89 1_555 F ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc8 E O4 THU . B THU 138 1_555 F ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
#
_chem_comp.formula           'C9 H14 N2 O5' 
_chem_comp.formula_weight    230.218 
_chem_comp.id                THU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TETRAHYDRODEOXYURIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 THU sing 306 n n 
N1 C6 THU sing 307 n n 
N1 C1' THU sing 308 n n 
C2 O2 THU doub 309 n n 
C2 N3 THU sing 310 n n 
N3 C4 THU sing 311 n n 
N3 HN3 THU sing 312 n n 
C4 O4 THU doub 313 n n 
C4 C5 THU sing 314 n n 
C5 C6 THU sing 315 n n 
C5 H51 THU sing 316 n n 
C5 H52 THU sing 317 n n 
C6 H61 THU sing 318 n n 
C6 H62 THU sing 319 n n 
C1' C2' THU sing 320 n n 
C1' O4' THU sing 321 n n 
C1' H1' THU sing 322 n n 
C2' C3' THU sing 323 n n 
C2' "H2'1" THU sing 324 n n 
C2' "H2'2" THU sing 325 n n 
C3' O3' THU sing 326 n n 
C3' C4' THU sing 327 n n 
C3' H3' THU sing 328 n n 
O3' HO3' THU sing 329 n n 
C4' O4' THU sing 330 n n 
C4' C5' THU sing 331 n n 
C4' H4' THU sing 332 n n 
C5' O5' THU sing 333 n n 
C5' "H5'1" THU sing 334 n n 
C5' "H5'2" THU sing 335 n n 
O5' HO5' THU sing 336 n n 
#
_atom_sites.entry_id                     1UX0 
_atom_sites.fract_transf_matrix[1][1]    0.013355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00641 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THU A 1 138 138 THU THU . 
D 3 ZN A 1 1131 1131 ZN ZN . 
E 2 THU B 1 138 138 THU THU . 
F 3 ZN B 1 1131 1131 ZN ZN . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
G 4 HOH A 14 2014 2014 HOH HOH . 
G 4 HOH A 15 2015 2015 HOH HOH . 
G 4 HOH A 16 2016 2016 HOH HOH . 
G 4 HOH A 17 2017 2017 HOH HOH . 
G 4 HOH A 18 2018 2018 HOH HOH . 
G 4 HOH A 19 2019 2019 HOH HOH . 
G 4 HOH A 20 2020 2020 HOH HOH . 
G 4 HOH A 21 2021 2021 HOH HOH . 
G 4 HOH A 22 2022 2022 HOH HOH . 
G 4 HOH A 23 2023 2023 HOH HOH . 
G 4 HOH A 24 2024 2024 HOH HOH . 
G 4 HOH A 25 2025 2025 HOH HOH . 
G 4 HOH A 26 2026 2026 HOH HOH . 
G 4 HOH A 27 2027 2027 HOH HOH . 
G 4 HOH A 28 2028 2028 HOH HOH . 
G 4 HOH A 29 2029 2029 HOH HOH . 
G 4 HOH A 30 2030 2030 HOH HOH . 
G 4 HOH A 31 2031 2031 HOH HOH . 
G 4 HOH A 32 2032 2032 HOH HOH . 
G 4 HOH A 33 2033 2033 HOH HOH . 
G 4 HOH A 34 2034 2034 HOH HOH . 
G 4 HOH A 35 2035 2035 HOH HOH . 
G 4 HOH A 36 2036 2036 HOH HOH . 
G 4 HOH A 37 2037 2037 HOH HOH . 
G 4 HOH A 38 2038 2038 HOH HOH . 
G 4 HOH A 39 2039 2039 HOH HOH . 
G 4 HOH A 40 2040 2040 HOH HOH . 
G 4 HOH A 41 2041 2041 HOH HOH . 
G 4 HOH A 42 2042 2042 HOH HOH . 
G 4 HOH A 43 2043 2043 HOH HOH . 
G 4 HOH A 44 2044 2044 HOH HOH . 
G 4 HOH A 45 2045 2045 HOH HOH . 
G 4 HOH A 46 2046 2046 HOH HOH . 
G 4 HOH A 47 2047 2047 HOH HOH . 
G 4 HOH A 48 2048 2048 HOH HOH . 
G 4 HOH A 49 2049 2049 HOH HOH . 
G 4 HOH A 50 2050 2050 HOH HOH . 
G 4 HOH A 51 2051 2051 HOH HOH . 
G 4 HOH A 52 2052 2052 HOH HOH . 
G 4 HOH A 53 2053 2053 HOH HOH . 
G 4 HOH A 54 2054 2054 HOH HOH . 
G 4 HOH A 55 2055 2055 HOH HOH . 
G 4 HOH A 56 2056 2056 HOH HOH . 
G 4 HOH A 57 2057 2057 HOH HOH . 
G 4 HOH A 58 2058 2058 HOH HOH . 
G 4 HOH A 59 2059 2059 HOH HOH . 
G 4 HOH A 60 2060 2060 HOH HOH . 
G 4 HOH A 61 2061 2061 HOH HOH . 
G 4 HOH A 62 2062 2062 HOH HOH . 
G 4 HOH A 63 2063 2063 HOH HOH . 
G 4 HOH A 64 2064 2064 HOH HOH . 
G 4 HOH A 65 2065 2065 HOH HOH . 
G 4 HOH A 66 2066 2066 HOH HOH . 
G 4 HOH A 67 2067 2067 HOH HOH . 
G 4 HOH A 68 2068 2068 HOH HOH . 
G 4 HOH A 69 2069 2069 HOH HOH . 
G 4 HOH A 70 2070 2070 HOH HOH . 
G 4 HOH A 71 2071 2071 HOH HOH . 
G 4 HOH A 72 2072 2072 HOH HOH . 
G 4 HOH A 73 2073 2073 HOH HOH . 
G 4 HOH A 74 2074 2074 HOH HOH . 
G 4 HOH A 75 2075 2075 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
H 4 HOH B 12 2012 2012 HOH HOH . 
H 4 HOH B 13 2013 2013 HOH HOH . 
H 4 HOH B 14 2014 2014 HOH HOH . 
H 4 HOH B 15 2015 2015 HOH HOH . 
H 4 HOH B 16 2016 2016 HOH HOH . 
H 4 HOH B 17 2017 2017 HOH HOH . 
H 4 HOH B 18 2018 2018 HOH HOH . 
H 4 HOH B 19 2019 2019 HOH HOH . 
H 4 HOH B 20 2020 2020 HOH HOH . 
H 4 HOH B 21 2021 2021 HOH HOH . 
H 4 HOH B 22 2022 2022 HOH HOH . 
H 4 HOH B 23 2023 2023 HOH HOH . 
H 4 HOH B 24 2024 2024 HOH HOH . 
H 4 HOH B 25 2025 2025 HOH HOH . 
H 4 HOH B 26 2026 2026 HOH HOH . 
H 4 HOH B 27 2027 2027 HOH HOH . 
H 4 HOH B 28 2028 2028 HOH HOH . 
H 4 HOH B 29 2029 2029 HOH HOH . 
H 4 HOH B 30 2030 2030 HOH HOH . 
H 4 HOH B 31 2031 2031 HOH HOH . 
H 4 HOH B 32 2032 2032 HOH HOH . 
H 4 HOH B 33 2033 2033 HOH HOH . 
H 4 HOH B 34 2034 2034 HOH HOH . 
H 4 HOH B 35 2035 2035 HOH HOH . 
H 4 HOH B 36 2036 2036 HOH HOH . 
H 4 HOH B 37 2037 2037 HOH HOH . 
H 4 HOH B 38 2038 2038 HOH HOH . 
H 4 HOH B 39 2039 2039 HOH HOH . 
H 4 HOH B 40 2040 2040 HOH HOH . 
H 4 HOH B 41 2041 2041 HOH HOH . 
H 4 HOH B 42 2042 2042 HOH HOH . 
H 4 HOH B 43 2043 2043 HOH HOH . 
H 4 HOH B 44 2044 2044 HOH HOH . 
H 4 HOH B 45 2045 2045 HOH HOH . 
H 4 HOH B 46 2046 2046 HOH HOH . 
H 4 HOH B 47 2047 2047 HOH HOH . 
H 4 HOH B 48 2048 2048 HOH HOH . 
H 4 HOH B 49 2049 2049 HOH HOH . 
H 4 HOH B 50 2050 2050 HOH HOH . 
H 4 HOH B 51 2051 2051 HOH HOH . 
H 4 HOH B 52 2052 2052 HOH HOH . 
H 4 HOH B 53 2053 2053 HOH HOH . 
H 4 HOH B 54 2054 2054 HOH HOH . 
H 4 HOH B 55 2055 2055 HOH HOH . 
H 4 HOH B 56 2056 2056 HOH HOH . 
H 4 HOH B 57 2057 2057 HOH HOH . 
H 4 HOH B 58 2058 2058 HOH HOH . 
H 4 HOH B 59 2059 2059 HOH HOH . 
H 4 HOH B 60 2060 2060 HOH HOH . 
H 4 HOH B 61 2061 2061 HOH HOH . 
H 4 HOH B 62 2062 2062 HOH HOH . 
H 4 HOH B 63 2063 2063 HOH HOH . 
H 4 HOH B 64 2064 2064 HOH HOH . 
H 4 HOH B 65 2065 2065 HOH HOH . 
H 4 HOH B 66 2066 2066 HOH HOH . 
H 4 HOH B 67 2067 2067 HOH HOH . 
H 4 HOH B 68 2068 2068 HOH HOH . 
H 4 HOH B 69 2069 2069 HOH HOH . 
H 4 HOH B 70 2070 2070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 THU . . . E 2 22.548 52.546 57.294 1 23.98 ? N1 THU 138 B 1 
HETATM 2 C C2 THU . . . E 2 21.791 51.429 57.331 1 22.2 ? C2 THU 138 B 1 
HETATM 3 O O2 THU . . . E 2 21.826 50.614 56.417 1 20.7 ? O2 THU 138 B 1 
HETATM 4 N N3 THU . . . E 2 20.995 51.217 58.406 1 23.26 ? N3 THU 138 B 1 
HETATM 5 C C4 THU . . . E 2 20.92 52.155 59.524 1 22.98 ? C4 THU 138 B 1 
HETATM 6 O O4 THU . . . E 2 19.632 52.74 59.694 1 21.92 ? O4 THU 138 B 1 
HETATM 7 C C5 THU . . . E 2 21.942 53.326 59.486 1 23.81 ? C5 THU 138 B 1 
HETATM 8 C C6 THU . . . E 2 22.236 53.704 58.022 1 21.78 ? C6 THU 138 B 1 
HETATM 9 C C1' THU . . . E 2 22.905 53.068 55.783 1 22.41 ? C1' THU 138 B 1 
HETATM 10 C C2' THU . . . E 2 22.331 53.372 54.434 1 23.1 ? C2' THU 138 B 1 
HETATM 11 C C3' THU . . . E 2 23.556 53.813 53.732 1 21.91 ? C3' THU 138 B 1 
HETATM 12 O O3' THU . . . E 2 23.896 52.952 52.684 1 23.29 ? O3' THU 138 B 1 
HETATM 13 C C4' THU . . . E 2 24.701 53.895 54.747 1 21.71 ? C4' THU 138 B 1 
HETATM 14 O O4' THU . . . E 2 24.298 53.277 55.964 1 21.75 ? O4' THU 138 B 1 
HETATM 15 C C5' THU . . . E 2 25.231 55.279 54.957 1 21.91 ? C5' THU 138 B 1 
HETATM 16 O O5' THU . . . E 2 24.124 56.081 55.381 1 19.11 ? O5' THU 138 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#