data_1UX1
#
_model_server_result.job_id            abAzRN8YU_PS_VN6SNBr5g 
_model_server_result.datetime_utc      '2024-10-12 06:17:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ux1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":138}' 
#
_entry.id    1UX1 
#
_exptl.entry_id    1UX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.218 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TETRAHYDRODEOXYURIDINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1UX1 
_cell.length_a            62.484 
_cell.length_b            62.484 
_cell.length_c            221.604 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 53 A HIS 53 1_555 F ZN ZN . A ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc2 A SG CYS 86 A CYS 86 1_555 F ZN ZN . A ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 A SG CYS 89 A CYS 89 1_555 F ZN ZN . A ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 E O4 THU . A THU 138 1_555 F ZN ZN . A ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc5 B ND1 HIS 53 B HIS 53 1_555 I ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc6 B SG CYS 86 B CYS 86 1_555 I ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B SG CYS 89 B CYS 89 1_555 I ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc8 H O4 THU . B THU 138 1_555 I ZN ZN . B ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc9 C ND1 HIS 53 C HIS 53 1_555 K ZN ZN . C ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc10 C SG CYS 86 C CYS 86 1_555 K ZN ZN . C ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc11 C SG CYS 89 C CYS 89 1_555 K ZN ZN . C ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc12 J O4 THU . C THU 138 1_555 K ZN ZN . C ZN 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc13 D ND1 HIS 53 D HIS 53 1_555 M ZN ZN . D ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc14 D SG CYS 86 D CYS 86 1_555 M ZN ZN . D ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc15 D SG CYS 89 D CYS 89 1_555 M ZN ZN . D ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc16 L O4 THU . D THU 138 1_555 M ZN ZN . D ZN 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
#
_chem_comp.formula           'C9 H14 N2 O5' 
_chem_comp.formula_weight    230.218 
_chem_comp.id                THU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TETRAHYDRODEOXYURIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 THU sing 306 n n 
N1 C6 THU sing 307 n n 
N1 C1' THU sing 308 n n 
C2 O2 THU doub 309 n n 
C2 N3 THU sing 310 n n 
N3 C4 THU sing 311 n n 
N3 HN3 THU sing 312 n n 
C4 O4 THU doub 313 n n 
C4 C5 THU sing 314 n n 
C5 C6 THU sing 315 n n 
C5 H51 THU sing 316 n n 
C5 H52 THU sing 317 n n 
C6 H61 THU sing 318 n n 
C6 H62 THU sing 319 n n 
C1' C2' THU sing 320 n n 
C1' O4' THU sing 321 n n 
C1' H1' THU sing 322 n n 
C2' C3' THU sing 323 n n 
C2' "H2'1" THU sing 324 n n 
C2' "H2'2" THU sing 325 n n 
C3' O3' THU sing 326 n n 
C3' C4' THU sing 327 n n 
C3' H3' THU sing 328 n n 
O3' HO3' THU sing 329 n n 
C4' O4' THU sing 330 n n 
C4' C5' THU sing 331 n n 
C4' H4' THU sing 332 n n 
C5' O5' THU sing 333 n n 
C5' "H5'1" THU sing 334 n n 
C5' "H5'2" THU sing 335 n n 
O5' HO5' THU sing 336 n n 
#
_atom_sites.entry_id                     1UX1 
_atom_sites.fract_transf_matrix[1][1]    0.016004 
_atom_sites.fract_transf_matrix[1][2]    0.00924 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 THU A 1 138 138 THU THU . 
F 3 ZN A 1 1132 1132 ZN ZN . 
G 4 TRS A 1 1133 1133 TRS TRS . 
H 2 THU B 1 138 138 THU THU . 
I 3 ZN B 1 1131 1131 ZN ZN . 
J 2 THU C 1 138 138 THU THU . 
K 3 ZN C 1 1131 1131 ZN ZN . 
L 2 THU D 1 138 138 THU THU . 
M 3 ZN D 1 1132 1132 ZN ZN . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
N 5 HOH A 7 2007 2007 HOH HOH . 
N 5 HOH A 8 2008 2008 HOH HOH . 
N 5 HOH A 9 2009 2009 HOH HOH . 
N 5 HOH A 10 2010 2010 HOH HOH . 
N 5 HOH A 11 2011 2011 HOH HOH . 
N 5 HOH A 12 2012 2012 HOH HOH . 
N 5 HOH A 13 2013 2013 HOH HOH . 
N 5 HOH A 14 2014 2014 HOH HOH . 
N 5 HOH A 15 2015 2015 HOH HOH . 
N 5 HOH A 16 2016 2016 HOH HOH . 
N 5 HOH A 17 2017 2017 HOH HOH . 
N 5 HOH A 18 2018 2018 HOH HOH . 
N 5 HOH A 19 2019 2019 HOH HOH . 
N 5 HOH A 20 2020 2020 HOH HOH . 
N 5 HOH A 21 2021 2021 HOH HOH . 
N 5 HOH A 22 2022 2022 HOH HOH . 
N 5 HOH A 23 2023 2023 HOH HOH . 
N 5 HOH A 24 2024 2024 HOH HOH . 
N 5 HOH A 25 2025 2025 HOH HOH . 
N 5 HOH A 26 2026 2026 HOH HOH . 
N 5 HOH A 27 2027 2027 HOH HOH . 
N 5 HOH A 28 2028 2028 HOH HOH . 
N 5 HOH A 29 2029 2029 HOH HOH . 
N 5 HOH A 30 2030 2030 HOH HOH . 
N 5 HOH A 31 2031 2031 HOH HOH . 
N 5 HOH A 32 2032 2032 HOH HOH . 
N 5 HOH A 33 2033 2033 HOH HOH . 
N 5 HOH A 34 2034 2034 HOH HOH . 
N 5 HOH A 35 2035 2035 HOH HOH . 
N 5 HOH A 36 2036 2036 HOH HOH . 
O 5 HOH B 1 2001 2001 HOH HOH . 
O 5 HOH B 2 2002 2002 HOH HOH . 
O 5 HOH B 3 2003 2003 HOH HOH . 
O 5 HOH B 4 2004 2004 HOH HOH . 
O 5 HOH B 5 2005 2005 HOH HOH . 
O 5 HOH B 6 2006 2006 HOH HOH . 
O 5 HOH B 7 2007 2007 HOH HOH . 
O 5 HOH B 8 2008 2008 HOH HOH . 
O 5 HOH B 9 2009 2009 HOH HOH . 
O 5 HOH B 10 2010 2010 HOH HOH . 
O 5 HOH B 11 2011 2011 HOH HOH . 
O 5 HOH B 12 2012 2012 HOH HOH . 
O 5 HOH B 13 2013 2013 HOH HOH . 
O 5 HOH B 14 2014 2014 HOH HOH . 
O 5 HOH B 15 2015 2015 HOH HOH . 
O 5 HOH B 16 2016 2016 HOH HOH . 
O 5 HOH B 17 2017 2017 HOH HOH . 
O 5 HOH B 18 2018 2018 HOH HOH . 
O 5 HOH B 19 2019 2019 HOH HOH . 
P 5 HOH C 1 2001 2001 HOH HOH . 
P 5 HOH C 2 2002 2002 HOH HOH . 
P 5 HOH C 3 2003 2003 HOH HOH . 
P 5 HOH C 4 2004 2004 HOH HOH . 
P 5 HOH C 5 2005 2005 HOH HOH . 
P 5 HOH C 6 2006 2006 HOH HOH . 
P 5 HOH C 7 2007 2007 HOH HOH . 
P 5 HOH C 8 2008 2008 HOH HOH . 
P 5 HOH C 9 2009 2009 HOH HOH . 
P 5 HOH C 10 2010 2010 HOH HOH . 
P 5 HOH C 11 2011 2011 HOH HOH . 
P 5 HOH C 12 2012 2012 HOH HOH . 
P 5 HOH C 13 2013 2013 HOH HOH . 
P 5 HOH C 14 2014 2014 HOH HOH . 
P 5 HOH C 15 2015 2015 HOH HOH . 
P 5 HOH C 16 2016 2016 HOH HOH . 
P 5 HOH C 17 2017 2017 HOH HOH . 
P 5 HOH C 18 2018 2018 HOH HOH . 
P 5 HOH C 19 2019 2019 HOH HOH . 
P 5 HOH C 20 2020 2020 HOH HOH . 
P 5 HOH C 21 2021 2021 HOH HOH . 
P 5 HOH C 22 2022 2022 HOH HOH . 
P 5 HOH C 23 2023 2023 HOH HOH . 
P 5 HOH C 24 2024 2024 HOH HOH . 
P 5 HOH C 25 2025 2025 HOH HOH . 
P 5 HOH C 26 2026 2026 HOH HOH . 
P 5 HOH C 27 2027 2027 HOH HOH . 
P 5 HOH C 28 2028 2028 HOH HOH . 
P 5 HOH C 29 2029 2029 HOH HOH . 
P 5 HOH C 30 2030 2030 HOH HOH . 
P 5 HOH C 31 2031 2031 HOH HOH . 
Q 5 HOH D 1 2001 2001 HOH HOH . 
Q 5 HOH D 2 2002 2002 HOH HOH . 
Q 5 HOH D 3 2003 2003 HOH HOH . 
Q 5 HOH D 4 2004 2004 HOH HOH . 
Q 5 HOH D 5 2005 2005 HOH HOH . 
Q 5 HOH D 6 2006 2006 HOH HOH . 
Q 5 HOH D 7 2007 2007 HOH HOH . 
Q 5 HOH D 8 2008 2008 HOH HOH . 
Q 5 HOH D 9 2009 2009 HOH HOH . 
Q 5 HOH D 10 2010 2010 HOH HOH . 
Q 5 HOH D 11 2011 2011 HOH HOH . 
Q 5 HOH D 12 2012 2012 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 THU . . . E 2 33.041 10.664 84.253 1 21.77 ? N1 THU 138 A 1 
HETATM 2 C C2 THU . . . E 2 33.604 9.803 85.116 1 21.91 ? C2 THU 138 A 1 
HETATM 3 O O2 THU . . . E 2 33.324 8.599 85.099 1 18.04 ? O2 THU 138 A 1 
HETATM 4 N N3 THU . . . E 2 34.487 10.291 86.007 1 20.35 ? N3 THU 138 A 1 
HETATM 5 C C4 THU . . . E 2 34.851 11.701 86.073 1 20.25 ? C4 THU 138 A 1 
HETATM 6 O O4 THU . . . E 2 34.844 12.236 87.387 1 18.37 ? O4 THU 138 A 1 
HETATM 7 C C5 THU . . . E 2 34.014 12.684 85.208 1 21.24 ? C5 THU 138 A 1 
HETATM 8 C C6 THU . . . E 2 32.791 12 84.574 1 21.05 ? C6 THU 138 A 1 
HETATM 9 C C1' THU . . . E 2 31.647 10.139 83.591 1 22.86 ? C1' THU 138 A 1 
HETATM 10 C C2' THU . . . E 2 30.215 9.791 83.881 1 23.54 ? C2' THU 138 A 1 
HETATM 11 C C3' THU . . . E 2 29.758 9.476 82.509 1 22.4 ? C3' THU 138 A 1 
HETATM 12 O O3' THU . . . E 2 29.491 8.11 82.329 1 20.39 ? O3' THU 138 A 1 
HETATM 13 C C4' THU . . . E 2 30.837 9.957 81.536 1 23.78 ? C4' THU 138 A 1 
HETATM 14 O O4' THU . . . E 2 32.076 10.05 82.25 1 22.79 ? O4' THU 138 A 1 
HETATM 15 C C5' THU . . . E 2 30.476 11.217 80.81 1 24.4 ? C5' THU 138 A 1 
HETATM 16 O O5' THU . . . E 2 30.468 12.27 81.781 1 27.62 ? O5' THU 138 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#