data_1UX8 # _model_server_result.job_id vJRl1c_-oJhaWw6sQ9xe8Q _model_server_result.datetime_utc '2024-11-05 00:38:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ux8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 1UX8 # _exptl.entry_id 1UX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1UX8 _cell.length_a 41.193 _cell.length_b 41.193 _cell.length_c 134.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1UX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 76 A HIS 76 1_555 B FE HEM . A HEM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc2 B FE HEM . A HEM 700 1_555 C C CYN . A CYN 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc3 B FE HEM . A HEM 700 1_555 C N CYN . A CYN 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1UX8 _atom_sites.fract_transf_matrix[1][1] 0.024276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 700 700 HEM HEM . C 3 CYN A 1 1124 1124 CYN CYN . D 4 CL A 1 1125 1125 CL CL . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -0.746 13.703 27.511 1 26.4 ? CHA HEM 700 A 1 HETATM 2 C CHB HEM . . . B 2 3.462 11.347 27.662 1 22.03 ? CHB HEM 700 A 1 HETATM 3 C CHC HEM . . . B 2 5.349 14.329 24.308 1 24.98 ? CHC HEM 700 A 1 HETATM 4 C CHD HEM . . . B 2 1.021 16.549 23.864 1 21.03 ? CHD HEM 700 A 1 HETATM 5 C C1A HEM . . . B 2 0.238 12.81 27.878 1 25.86 ? C1A HEM 700 A 1 HETATM 6 C C2A HEM . . . B 2 0.13 11.746 28.854 1 28.96 ? C2A HEM 700 A 1 HETATM 7 C C3A HEM . . . B 2 1.309 11.103 28.885 1 28.98 ? C3A HEM 700 A 1 HETATM 8 C C4A HEM . . . B 2 2.182 11.727 27.927 1 25.87 ? C4A HEM 700 A 1 HETATM 9 C CMA HEM . . . B 2 1.668 9.887 29.779 1 29.11 ? CMA HEM 700 A 1 HETATM 10 C CAA HEM . . . B 2 -1.096 11.388 29.739 1 30.45 ? CAA HEM 700 A 1 HETATM 11 C CBA HEM . . . B 2 -2.335 11.077 28.891 1 31.31 ? CBA HEM 700 A 1 HETATM 12 C CGA HEM . . . B 2 -3.548 11.922 29.28 1 36.1 ? CGA HEM 700 A 1 HETATM 13 O O1A HEM . . . B 2 -3.519 12.62 30.348 1 36.99 ? O1A HEM 700 A 1 HETATM 14 O O2A HEM . . . B 2 -4.573 11.91 28.51 1 36.89 ? O2A HEM 700 A 1 HETATM 15 C C1B HEM . . . B 2 4.294 11.946 26.768 1 20.53 ? C1B HEM 700 A 1 HETATM 16 C C2B HEM . . . B 2 5.616 11.459 26.445 1 21.24 ? C2B HEM 700 A 1 HETATM 17 C C3B HEM . . . B 2 6.137 12.289 25.529 1 20.85 ? C3B HEM 700 A 1 HETATM 18 C C4B HEM . . . B 2 5.182 13.317 25.237 1 21.96 ? C4B HEM 700 A 1 HETATM 19 C CMB HEM . . . B 2 6.272 10.193 27.077 1 22.21 ? CMB HEM 700 A 1 HETATM 20 C CAB HEM . . . B 2 7.523 12.207 24.887 1 22.19 ? CAB HEM 700 A 1 HETATM 21 C CBB HEM . . . B 2 8.386 13.166 25.212 1 23.85 ? CBB HEM 700 A 1 HETATM 22 C C1C HEM . . . B 2 4.326 15.127 23.807 1 22.24 ? C1C HEM 700 A 1 HETATM 23 C C2C HEM . . . B 2 4.386 16.02 22.668 1 24.41 ? C2C HEM 700 A 1 HETATM 24 C C3C HEM . . . B 2 3.188 16.631 22.572 1 23.97 ? C3C HEM 700 A 1 HETATM 25 C C4C HEM . . . B 2 2.321 16.155 23.618 1 20.73 ? C4C HEM 700 A 1 HETATM 26 C CMC HEM . . . B 2 5.609 16.251 21.729 1 21.17 ? CMC HEM 700 A 1 HETATM 27 C CAC HEM . . . B 2 2.836 17.671 21.506 1 28.55 ? CAC HEM 700 A 1 HETATM 28 C CBC HEM . . . B 2 2.164 17.331 20.403 1 32.2 ? CBC HEM 700 A 1 HETATM 29 C C1D HEM . . . B 2 0.145 16.05 24.82 1 21.06 ? C1D HEM 700 A 1 HETATM 30 C C2D HEM . . . B 2 -1.21 16.511 25.068 1 21.62 ? C2D HEM 700 A 1 HETATM 31 C C3D HEM . . . B 2 -1.738 15.594 26.18 1 22.37 ? C3D HEM 700 A 1 HETATM 32 C C4D HEM . . . B 2 -0.668 14.682 26.517 1 23.83 ? C4D HEM 700 A 1 HETATM 33 C CMD HEM . . . B 2 -1.971 17.659 24.36 1 21.42 ? CMD HEM 700 A 1 HETATM 34 C CAD HEM . . . B 2 -3.099 15.617 26.876 1 22.67 ? CAD HEM 700 A 1 HETATM 35 C CBD HEM . . . B 2 -2.927 16.51 28.089 1 25.57 ? CBD HEM 700 A 1 HETATM 36 C CGD HEM . . . B 2 -4.207 16.544 28.845 1 25.84 ? CGD HEM 700 A 1 HETATM 37 O O1D HEM . . . B 2 -4.459 15.501 29.49 1 24.59 ? O1D HEM 700 A 1 HETATM 38 O O2D HEM . . . B 2 -4.954 17.575 28.797 1 26.59 ? O2D HEM 700 A 1 HETATM 39 N NA HEM . . . B 2 1.495 12.765 27.312 1 24.88 ? NA HEM 700 A 1 HETATM 40 N NB HEM . . . B 2 4.043 13.069 25.999 1 21.81 ? NB HEM 700 A 1 HETATM 41 N NC HEM . . . B 2 3.062 15.232 24.349 1 21.7 ? NC HEM 700 A 1 HETATM 42 N ND HEM . . . B 2 0.41 14.96 25.681 1 22.32 ? ND HEM 700 A 1 HETATM 43 FE FE HEM . . . B 2 2.326 14.068 25.85 1 23.02 ? FE HEM 700 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #