data_1UX9
#
_model_server_result.job_id            L782X8ylXKKCPv6PZsB3EA 
_model_server_result.datetime_utc      '2025-08-09 17:40:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ux9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1172}' 
#
_entry.id    1UX9 
#
_exptl.entry_id    1UX9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1UX9 
_cell.length_a            47.84 
_cell.length_b            70.52 
_cell.length_c            98.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1UX9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 81 A HIS 81 1_555 D FE HEM . A HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc2 A NE2 HIS 113 A HIS 113 1_555 D FE HEM . A HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc3 B NE2 HIS 81 B HIS 81 1_555 I FE HEM . B HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc4 B NE2 HIS 113 B HIS 113 1_555 I FE HEM . B HEM 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 141 n n 
CHA C4D HEM doub 142 n n 
CHA HHA HEM sing 143 n n 
CHB C4A HEM sing 144 n n 
CHB C1B HEM doub 145 n n 
CHB HHB HEM sing 146 n n 
CHC C4B HEM sing 147 n n 
CHC C1C HEM doub 148 n n 
CHC HHC HEM sing 149 n n 
CHD C4C HEM doub 150 n n 
CHD C1D HEM sing 151 n n 
CHD HHD HEM sing 152 n n 
C1A C2A HEM doub 153 n y 
C1A NA HEM sing 154 n y 
C2A C3A HEM sing 155 n y 
C2A CAA HEM sing 156 n n 
C3A C4A HEM doub 157 n y 
C3A CMA HEM sing 158 n n 
C4A NA HEM sing 159 n y 
CMA HMA HEM sing 160 n n 
CMA HMAA HEM sing 161 n n 
CMA HMAB HEM sing 162 n n 
CAA CBA HEM sing 163 n n 
CAA HAA HEM sing 164 n n 
CAA HAAA HEM sing 165 n n 
CBA CGA HEM sing 166 n n 
CBA HBA HEM sing 167 n n 
CBA HBAA HEM sing 168 n n 
CGA O1A HEM doub 169 n n 
CGA O2A HEM sing 170 n n 
C1B C2B HEM sing 171 n n 
C1B NB HEM sing 172 n n 
C2B C3B HEM doub 173 n n 
C2B CMB HEM sing 174 n n 
C3B C4B HEM sing 175 n n 
C3B CAB HEM sing 176 n n 
C4B NB HEM doub 177 n n 
CMB HMB HEM sing 178 n n 
CMB HMBA HEM sing 179 n n 
CMB HMBB HEM sing 180 n n 
CAB CBB HEM doub 181 n n 
CAB HAB HEM sing 182 n n 
CBB HBB HEM sing 183 n n 
CBB HBBA HEM sing 184 n n 
C1C C2C HEM sing 185 n y 
C1C NC HEM sing 186 n y 
C2C C3C HEM doub 187 n y 
C2C CMC HEM sing 188 n n 
C3C C4C HEM sing 189 n y 
C3C CAC HEM sing 190 n n 
C4C NC HEM sing 191 n y 
CMC HMC HEM sing 192 n n 
CMC HMCA HEM sing 193 n n 
CMC HMCB HEM sing 194 n n 
CAC CBC HEM doub 195 n n 
CAC HAC HEM sing 196 n n 
CBC HBC HEM sing 197 n n 
CBC HBCA HEM sing 198 n n 
C1D C2D HEM sing 199 n n 
C1D ND HEM doub 200 n n 
C2D C3D HEM doub 201 n n 
C2D CMD HEM sing 202 n n 
C3D C4D HEM sing 203 n n 
C3D CAD HEM sing 204 n n 
C4D ND HEM sing 205 n n 
CMD HMD HEM sing 206 n n 
CMD HMDA HEM sing 207 n n 
CMD HMDB HEM sing 208 n n 
CAD CBD HEM sing 209 n n 
CAD HAD HEM sing 210 n n 
CAD HADA HEM sing 211 n n 
CBD CGD HEM sing 212 n n 
CBD HBD HEM sing 213 n n 
CBD HBDA HEM sing 214 n n 
CGD O1D HEM doub 215 n n 
CGD O2D HEM sing 216 n n 
O2A H2A HEM sing 217 n n 
O2D H2D HEM sing 218 n n 
FE NA HEM sing 219 n n 
FE NB HEM sing 220 n n 
FE NC HEM sing 221 n n 
FE ND HEM sing 222 n n 
#
_atom_sites.entry_id                     1UX9 
_atom_sites.fract_transf_matrix[1][1]    0.020903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010129 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XE A 1 802 802 XE XE . 
D 3 HEM A 1 1172 1172 HEM HEM . 
E 2 XE A 1 1173 1173 XE XE . 
F 2 XE A 1 1174 1174 XE XE . 
G 2 XE A 1 1175 1175 XE XE . 
H 4 FC6 A 1 1176 1176 FC6 FC6 . 
I 3 HEM B 1 1172 1172 HEM HEM . 
J 2 XE B 1 1173 1173 XE XE . 
K 2 XE B 1 1174 1174 XE XE . 
L 2 XE B 1 1175 1175 XE XE . 
M 4 FC6 B 1 1176 1176 FC6 FC6 . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
N 5 HOH A 7 2007 2007 HOH HOH . 
N 5 HOH A 8 2008 2008 HOH HOH . 
N 5 HOH A 9 2009 2009 HOH HOH . 
N 5 HOH A 10 2010 2010 HOH HOH . 
N 5 HOH A 11 2011 2011 HOH HOH . 
N 5 HOH A 12 2012 2012 HOH HOH . 
N 5 HOH A 13 2013 2013 HOH HOH . 
N 5 HOH A 14 2014 2014 HOH HOH . 
N 5 HOH A 15 2015 2015 HOH HOH . 
N 5 HOH A 16 2016 2016 HOH HOH . 
N 5 HOH A 17 2017 2017 HOH HOH . 
N 5 HOH A 18 2018 2018 HOH HOH . 
N 5 HOH A 19 2019 2019 HOH HOH . 
N 5 HOH A 20 2020 2020 HOH HOH . 
N 5 HOH A 21 2021 2021 HOH HOH . 
N 5 HOH A 22 2022 2022 HOH HOH . 
O 5 HOH B 1 2001 2001 HOH HOH . 
O 5 HOH B 2 2002 2002 HOH HOH . 
O 5 HOH B 3 2003 2003 HOH HOH . 
O 5 HOH B 4 2004 2004 HOH HOH . 
O 5 HOH B 5 2005 2005 HOH HOH . 
O 5 HOH B 6 2006 2006 HOH HOH . 
O 5 HOH B 7 2007 2007 HOH HOH . 
O 5 HOH B 8 2008 2008 HOH HOH . 
O 5 HOH B 9 2009 2009 HOH HOH . 
O 5 HOH B 10 2010 2010 HOH HOH . 
O 5 HOH B 11 2011 2011 HOH HOH . 
O 5 HOH B 12 2012 2012 HOH HOH . 
O 5 HOH B 13 2013 2013 HOH HOH . 
O 5 HOH B 14 2014 2014 HOH HOH . 
O 5 HOH B 15 2015 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 16.043 5.59 53.886 1 19.23 ? CHA HEM 1172 A 1 
HETATM 2 C CHB HEM . . . D 3 20.589 5.883 52.12 1 18.02 ? CHB HEM 1172 A 1 
HETATM 3 C CHC HEM . . . D 3 19.381 3.193 48.308 1 22.97 ? CHC HEM 1172 A 1 
HETATM 4 C CHD HEM . . . D 3 14.973 2.529 50.241 1 21.94 ? CHD HEM 1172 A 1 
HETATM 5 C C1A HEM . . . D 3 17.38 5.913 53.722 1 20.2 ? C1A HEM 1172 A 1 
HETATM 6 C C2A HEM . . . D 3 18.182 6.754 54.598 1 21.51 ? C2A HEM 1172 A 1 
HETATM 7 C C3A HEM . . . D 3 19.43 6.815 54.121 1 20.39 ? C3A HEM 1172 A 1 
HETATM 8 C C4A HEM . . . D 3 19.472 6.035 52.913 1 18.74 ? C4A HEM 1172 A 1 
HETATM 9 C CMA HEM . . . D 3 20.612 7.589 54.746 1 20.23 ? CMA HEM 1172 A 1 
HETATM 10 C CAA HEM . . . D 3 17.711 7.432 55.9 1 23.22 ? CAA HEM 1172 A 1 
HETATM 11 C CBA HEM . . . D 3 18.163 6.604 57.107 1 24.76 ? CBA HEM 1172 A 1 
HETATM 12 C CGA HEM . . . D 3 17.424 5.284 57.09 1 25.73 ? CGA HEM 1172 A 1 
HETATM 13 O O1A HEM . . . D 3 16.183 5.299 57.3 1 26.35 ? O1A HEM 1172 A 1 
HETATM 14 O O2A HEM . . . D 3 18.072 4.228 56.857 1 27.01 ? O2A HEM 1172 A 1 
HETATM 15 C C1B HEM . . . D 3 20.664 5.206 50.936 1 17.74 ? C1B HEM 1172 A 1 
HETATM 16 C C2B HEM . . . D 3 21.841 5.063 50.097 1 19.27 ? C2B HEM 1172 A 1 
HETATM 17 C C3B HEM . . . D 3 21.504 4.313 49.039 1 21.76 ? C3B HEM 1172 A 1 
HETATM 18 C C4B HEM . . . D 3 20.108 3.955 49.188 1 21.53 ? C4B HEM 1172 A 1 
HETATM 19 C CMB HEM . . . D 3 23.206 5.676 50.415 1 19.56 ? CMB HEM 1172 A 1 
HETATM 20 C CAB HEM . . . D 3 22.362 3.878 47.842 1 23.35 ? CAB HEM 1172 A 1 
HETATM 21 C CBB HEM . . . D 3 23.476 4.531 47.529 1 26.81 ? CBB HEM 1172 A 1 
HETATM 22 C C1C HEM . . . D 3 18.095 2.774 48.519 1 21.96 ? C1C HEM 1172 A 1 
HETATM 23 C C2C HEM . . . D 3 17.371 1.889 47.634 1 21.36 ? C2C HEM 1172 A 1 
HETATM 24 C C3C HEM . . . D 3 16.158 1.721 48.159 1 20.83 ? C3C HEM 1172 A 1 
HETATM 25 C C4C HEM . . . D 3 16.076 2.494 49.392 1 21.48 ? C4C HEM 1172 A 1 
HETATM 26 C CMC HEM . . . D 3 17.966 1.26 46.353 1 20.73 ? CMC HEM 1172 A 1 
HETATM 27 C CAC HEM . . . D 3 15.028 0.835 47.614 1 22.47 ? CAC HEM 1172 A 1 
HETATM 28 C CBC HEM . . . D 3 14.833 0.667 46.309 1 24.19 ? CBC HEM 1172 A 1 
HETATM 29 C C1D HEM . . . D 3 14.82 3.273 51.391 1 20.52 ? C1D HEM 1172 A 1 
HETATM 30 C C2D HEM . . . D 3 13.618 3.361 52.179 1 22.35 ? C2D HEM 1172 A 1 
HETATM 31 C C3D HEM . . . D 3 13.952 4.339 53.292 1 21.96 ? C3D HEM 1172 A 1 
HETATM 32 C C4D HEM . . . D 3 15.323 4.736 53.098 1 19.67 ? C4D HEM 1172 A 1 
HETATM 33 C CMD HEM . . . D 3 12.248 2.675 51.969 1 23.25 ? CMD HEM 1172 A 1 
HETATM 34 C CAD HEM . . . D 3 12.973 4.801 54.376 1 21.21 ? CAD HEM 1172 A 1 
HETATM 35 C CBD HEM . . . D 3 12.372 6.021 53.668 1 23.66 ? CBD HEM 1172 A 1 
HETATM 36 C CGD HEM . . . D 3 11.497 6.798 54.585 1 20.3 ? CGD HEM 1172 A 1 
HETATM 37 O O1D HEM . . . D 3 10.786 7.666 54.077 1 21.16 ? O1D HEM 1172 A 1 
HETATM 38 O O2D HEM . . . D 3 11.52 6.513 55.789 1 22.06 ? O2D HEM 1172 A 1 
HETATM 39 N NA HEM . . . D 3 18.206 5.497 52.701 1 19 ? NA HEM 1172 A 1 
HETATM 40 N NB HEM . . . D 3 19.627 4.523 50.349 1 18.02 ? NB HEM 1172 A 1 
HETATM 41 N NC HEM . . . D 3 17.287 3.14 49.577 1 19.8 ? NC HEM 1172 A 1 
HETATM 42 N ND HEM . . . D 3 15.787 4.079 51.975 1 21.03 ? ND HEM 1172 A 1 
HETATM 43 FE FE HEM . . . D 3 17.762 4.389 51.099 1 20.13 ? FE HEM 1172 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           712 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#