data_1V1B # _model_server_result.job_id 1qPtQNoA8koELeyETeIFwQ _model_server_result.datetime_utc '2024-11-28 12:20:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1301}' # _entry.id 1V1B # _exptl.entry_id 1V1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V1B _cell.length_a 84.721 _cell.length_b 84.721 _cell.length_c 321.613 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PQS hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1,2,3 C,D,G,H,K,L 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 42.3605 73.370538 0 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 84.721 0 0 4 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -42.3605 73.370538 0 5 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 42.3605 73.370538 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1V1B _atom_sites.fract_transf_matrix[1][1] 0.011803 _atom_sites.fract_transf_matrix[1][2] 0.006815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 1301 1301 ATP ATP . F 2 ATP B 1 1301 1301 ATP ATP . G 2 ATP C 1 1301 1301 ATP ATP . H 2 ATP D 1 1301 1301 ATP ATP . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . I 3 HOH A 6 2006 2006 HOH HOH . I 3 HOH A 7 2007 2007 HOH HOH . I 3 HOH A 8 2008 2008 HOH HOH . I 3 HOH A 9 2009 2009 HOH HOH . I 3 HOH A 10 2010 2010 HOH HOH . I 3 HOH A 11 2011 2011 HOH HOH . I 3 HOH A 12 2012 2012 HOH HOH . I 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH A 14 2014 2014 HOH HOH . I 3 HOH A 15 2015 2015 HOH HOH . I 3 HOH A 16 2016 2016 HOH HOH . I 3 HOH A 17 2017 2017 HOH HOH . I 3 HOH A 18 2018 2018 HOH HOH . I 3 HOH A 19 2019 2019 HOH HOH . I 3 HOH A 20 2020 2020 HOH HOH . I 3 HOH A 21 2021 2021 HOH HOH . I 3 HOH A 22 2022 2022 HOH HOH . I 3 HOH A 23 2023 2023 HOH HOH . I 3 HOH A 24 2024 2024 HOH HOH . I 3 HOH A 25 2025 2025 HOH HOH . I 3 HOH A 26 2026 2026 HOH HOH . I 3 HOH A 27 2027 2027 HOH HOH . I 3 HOH A 28 2028 2028 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . J 3 HOH B 5 2005 2005 HOH HOH . J 3 HOH B 6 2006 2006 HOH HOH . J 3 HOH B 7 2007 2007 HOH HOH . J 3 HOH B 8 2008 2008 HOH HOH . J 3 HOH B 9 2009 2009 HOH HOH . J 3 HOH B 10 2010 2010 HOH HOH . J 3 HOH B 11 2011 2011 HOH HOH . J 3 HOH B 12 2012 2012 HOH HOH . J 3 HOH B 13 2013 2013 HOH HOH . J 3 HOH B 14 2014 2014 HOH HOH . J 3 HOH B 15 2015 2015 HOH HOH . J 3 HOH B 16 2016 2016 HOH HOH . J 3 HOH B 17 2017 2017 HOH HOH . J 3 HOH B 18 2018 2018 HOH HOH . J 3 HOH B 19 2019 2019 HOH HOH . J 3 HOH B 20 2020 2020 HOH HOH . J 3 HOH B 21 2021 2021 HOH HOH . J 3 HOH B 22 2022 2022 HOH HOH . J 3 HOH B 23 2023 2023 HOH HOH . J 3 HOH B 24 2024 2024 HOH HOH . J 3 HOH B 25 2025 2025 HOH HOH . J 3 HOH B 26 2026 2026 HOH HOH . J 3 HOH B 27 2027 2027 HOH HOH . J 3 HOH B 28 2028 2028 HOH HOH . J 3 HOH B 29 2029 2029 HOH HOH . J 3 HOH B 30 2030 2030 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . K 3 HOH C 3 2003 2003 HOH HOH . K 3 HOH C 4 2004 2004 HOH HOH . K 3 HOH C 5 2005 2005 HOH HOH . K 3 HOH C 6 2006 2006 HOH HOH . K 3 HOH C 7 2007 2007 HOH HOH . K 3 HOH C 8 2008 2008 HOH HOH . K 3 HOH C 9 2009 2009 HOH HOH . K 3 HOH C 10 2010 2010 HOH HOH . K 3 HOH C 11 2011 2011 HOH HOH . K 3 HOH C 12 2012 2012 HOH HOH . K 3 HOH C 13 2013 2013 HOH HOH . K 3 HOH C 14 2014 2014 HOH HOH . K 3 HOH C 15 2015 2015 HOH HOH . K 3 HOH C 16 2016 2016 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . L 3 HOH D 3 2003 2003 HOH HOH . L 3 HOH D 4 2004 2004 HOH HOH . L 3 HOH D 5 2005 2005 HOH HOH . L 3 HOH D 6 2006 2006 HOH HOH . L 3 HOH D 7 2007 2007 HOH HOH . L 3 HOH D 8 2008 2008 HOH HOH . L 3 HOH D 9 2009 2009 HOH HOH . L 3 HOH D 10 2010 2010 HOH HOH . L 3 HOH D 11 2011 2011 HOH HOH . L 3 HOH D 12 2012 2012 HOH HOH . L 3 HOH D 13 2013 2013 HOH HOH . L 3 HOH D 14 2014 2014 HOH HOH . L 3 HOH D 15 2015 2015 HOH HOH . L 3 HOH D 16 2016 2016 HOH HOH . L 3 HOH D 17 2017 2017 HOH HOH . L 3 HOH D 18 2018 2018 HOH HOH . L 3 HOH D 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 29.784 41.762 22.283 1 112.34 ? PG ATP 1301 A 1 HETATM 2 O O1G ATP . . . E 2 29.404 40.371 22.679 1 108.26 ? O1G ATP 1301 A 1 HETATM 3 O O2G ATP . . . E 2 29.03 42.734 23.116 1 111.88 ? O2G ATP 1301 A 1 HETATM 4 O O3G ATP . . . E 2 31.223 41.963 22.504 1 112.75 ? O3G ATP 1301 A 1 HETATM 5 P PB ATP . . . E 2 30.1 40.943 19.728 1 121.42 ? PB ATP 1301 A 1 HETATM 6 O O1B ATP . . . E 2 31.447 40.67 20.114 1 121.95 ? O1B ATP 1301 A 1 HETATM 7 O O2B ATP . . . E 2 29.339 39.706 19.749 1 119.48 ? O2B ATP 1301 A 1 HETATM 8 O O3B ATP . . . E 2 29.426 42.017 20.729 1 116.4 ? O3B ATP 1301 A 1 HETATM 9 P PA ATP . . . E 2 30.973 40.807 17.185 1 104.87 ? PA ATP 1301 A 1 HETATM 10 O O1A ATP . . . E 2 30.397 41.016 15.867 1 104.56 ? O1A ATP 1301 A 1 HETATM 11 O O2A ATP . . . E 2 31.008 39.358 17.448 1 102.43 ? O2A ATP 1301 A 1 HETATM 12 O O3A ATP . . . E 2 30.068 41.564 18.256 1 113.51 ? O3A ATP 1301 A 1 HETATM 13 O O5' ATP . . . E 2 32.358 41.354 17.255 1 101.44 ? O5' ATP 1301 A 1 HETATM 14 C C5' ATP . . . E 2 32.95 41.371 16.126 1 96.84 ? C5' ATP 1301 A 1 HETATM 15 C C4' ATP . . . E 2 34.146 42.25 16.167 1 93.78 ? C4' ATP 1301 A 1 HETATM 16 O O4' ATP . . . E 2 35.023 41.526 17.075 1 93.62 ? O4' ATP 1301 A 1 HETATM 17 C C3' ATP . . . E 2 34.519 42.038 14.756 1 95.63 ? C3' ATP 1301 A 1 HETATM 18 O O3' ATP . . . E 2 34.213 43.093 13.861 1 98.31 ? O3' ATP 1301 A 1 HETATM 19 C C2' ATP . . . E 2 36.014 41.635 14.873 1 92.55 ? C2' ATP 1301 A 1 HETATM 20 O O2' ATP . . . E 2 36.848 42.738 14.582 1 85.69 ? O2' ATP 1301 A 1 HETATM 21 C C1' ATP . . . E 2 36.23 41.122 16.336 1 91.32 ? C1' ATP 1301 A 1 HETATM 22 N N9 ATP . . . E 2 36.371 39.641 16.433 1 93.52 ? N9 ATP 1301 A 1 HETATM 23 C C8 ATP . . . E 2 35.504 38.666 16.963 1 95.82 ? C8 ATP 1301 A 1 HETATM 24 N N7 ATP . . . E 2 35.949 37.445 16.882 1 94.62 ? N7 ATP 1301 A 1 HETATM 25 C C5 ATP . . . E 2 37.185 37.62 16.265 1 93.04 ? C5 ATP 1301 A 1 HETATM 26 C C6 ATP . . . E 2 38.22 36.699 15.857 1 92.1 ? C6 ATP 1301 A 1 HETATM 27 N N6 ATP . . . E 2 38.116 35.394 16.057 1 92.54 ? N6 ATP 1301 A 1 HETATM 28 N N1 ATP . . . E 2 39.361 37.205 15.247 1 92.78 ? N1 ATP 1301 A 1 HETATM 29 C C2 ATP . . . E 2 39.497 38.532 15.03 1 92.92 ? C2 ATP 1301 A 1 HETATM 30 N N3 ATP . . . E 2 38.606 39.493 15.36 1 92.79 ? N3 ATP 1301 A 1 HETATM 31 C C4 ATP . . . E 2 37.443 38.946 15.984 1 94.11 ? C4 ATP 1301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #