data_1V1F # _model_server_result.job_id Ijz53it_hYS8Tm6jH5bJ3g _model_server_result.datetime_utc '2024-11-24 10:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1206}' # _entry.id 1V1F # _exptl.entry_id 1V1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V1F _cell.length_a 91.9 _cell.length_b 91.9 _cell.length_c 85.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 91.9 91.9 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 47 A SER 47 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A O ILE 51 A ILE 51 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 A OD1 ASP 53 A ASP 53 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc4 A O LEU 55 A LEU 55 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 A OE1 GLU 60 A GLU 60 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc6 A OE2 GLU 60 A GLU 60 1_555 F CA CA . A CA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc7 A OD2 ASP 84 A ASP 84 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc8 A O LYS 86 A LYS 86 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc9 A OD1 ASN 88 A ASN 88 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc10 A O VAL 90 A VAL 90 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc11 A OE2 GLU 95 A GLU 95 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc12 A OE1 GLU 95 A GLU 95 1_555 G CA CA . A CA 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc13 A OD1 ASP 121 A ASP 121 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 A O ARG 123 A ARG 123 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc15 A OG1 THR 125 A THR 125 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.217 ? metalc ? metalc16 A O PHE 127 A PHE 127 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc17 A OE2 GLU 129 A GLU 129 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc18 A OE1 GLU 132 A GLU 132 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc19 A OE2 GLU 132 A GLU 132 1_555 H CA CA . A CA 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc20 A OD1 ASP 165 A ASP 165 1_555 I MN MN . A MN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc21 A O LYS 171 A LYS 171 1_555 I MN MN . A MN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc22 A OE1 GLU 176 A GLU 176 1_555 I MN MN . A MN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc23 A OE2 GLU 176 A GLU 176 1_555 I MN MN . A MN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc24 I MN MN . A MN 1210 1_555 O O HOH . A HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V1F _atom_sites.fract_transf_matrix[1][1] 0.010881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 1203 1203 IOD IOD . C 2 IOD A 1 1204 1204 IOD IOD . D 2 IOD A 1 1205 1205 IOD IOD . E 2 IOD A 1 1206 1206 IOD IOD . F 3 CA A 1 1207 1207 CA CA . G 3 CA A 1 1208 1208 CA CA . H 3 CA A 1 1209 1209 CA CA . I 4 MN A 1 1210 1210 MN MN . J 5 MPD A 1 1211 1211 MPD MPD . K 5 MPD A 1 1212 1212 MPD MPD . L 2 IOD A 1 1213 1213 IOD IOD . M 2 IOD A 1 1214 1214 IOD IOD . N 2 IOD A 1 1215 1215 IOD IOD . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 21.598 _atom_site.Cartn_y 56.795 _atom_site.Cartn_z 4.467 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 115.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 1206 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #