data_1V2E
#
_model_server_result.job_id            NF1Equc7PTz9PGk9IsVp9Q 
_model_server_result.datetime_utc      '2024-11-25 07:03:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1520}' 
#
_entry.id    1V2E 
#
_exptl.entry_id    1V2E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              148.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V2E 
_cell.length_a            123.14 
_cell.length_b            123.14 
_cell.length_c            122.96 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 222 A LYS 222 1_555 C C4A PLP . A PLP 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? 
covale ? covale2 B NZ LYS 222 B LYS 222 1_555 E C4A PLP . B PLP 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
#
_chem_comp.formula           'C5 H8 O3 S' 
_chem_comp.formula_weight    148.18 
_chem_comp.id                KMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 KMT sing 173 n n 
C1 O2 KMT doub 174 n n 
C1 C2 KMT sing 175 n n 
O1 HO1 KMT sing 176 n n 
C2 O5 KMT doub 177 n n 
C2 C3 KMT sing 178 n n 
C3 C4 KMT sing 179 n n 
C3 H31 KMT sing 180 n n 
C3 H32 KMT sing 181 n n 
C4 S1 KMT sing 182 n n 
C4 H41 KMT sing 183 n n 
C4 H42 KMT sing 184 n n 
S1 C5 KMT sing 185 n n 
C5 H51 KMT sing 186 n n 
C5 H52 KMT sing 187 n n 
C5 H53 KMT sing 188 n n 
#
_atom_sites.entry_id                     1V2E 
_atom_sites.fract_transf_matrix[1][1]    0.008121 
_atom_sites.fract_transf_matrix[1][2]    0.004689 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009377 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 510 510 PLP PLP . 
D 3 KMT A 1 520 520 KMT KMT . 
E 2 PLP B 1 1510 1510 PLP PLP . 
F 3 KMT B 1 1520 1520 KMT KMT . 
G 4 HOH A 1 521 2 HOH HOH . 
G 4 HOH A 2 522 4 HOH HOH . 
G 4 HOH A 3 523 7 HOH HOH . 
G 4 HOH A 4 524 8 HOH HOH . 
G 4 HOH A 5 525 9 HOH HOH . 
G 4 HOH A 6 526 11 HOH HOH . 
G 4 HOH A 7 527 13 HOH HOH . 
G 4 HOH A 8 528 15 HOH HOH . 
G 4 HOH A 9 529 17 HOH HOH . 
G 4 HOH A 10 530 18 HOH HOH . 
G 4 HOH A 11 531 19 HOH HOH . 
G 4 HOH A 12 532 21 HOH HOH . 
G 4 HOH A 13 533 22 HOH HOH . 
G 4 HOH A 14 534 24 HOH HOH . 
G 4 HOH A 15 535 25 HOH HOH . 
G 4 HOH A 16 536 26 HOH HOH . 
G 4 HOH A 17 537 29 HOH HOH . 
G 4 HOH A 18 538 30 HOH HOH . 
G 4 HOH A 19 539 31 HOH HOH . 
G 4 HOH A 20 540 33 HOH HOH . 
G 4 HOH A 21 541 34 HOH HOH . 
G 4 HOH A 22 542 35 HOH HOH . 
G 4 HOH A 23 543 36 HOH HOH . 
G 4 HOH A 24 544 37 HOH HOH . 
G 4 HOH A 25 545 38 HOH HOH . 
G 4 HOH A 26 546 40 HOH HOH . 
G 4 HOH A 27 547 41 HOH HOH . 
G 4 HOH A 28 548 43 HOH HOH . 
G 4 HOH A 29 549 44 HOH HOH . 
G 4 HOH A 30 550 46 HOH HOH . 
G 4 HOH A 31 551 48 HOH HOH . 
G 4 HOH A 32 552 52 HOH HOH . 
G 4 HOH A 33 553 53 HOH HOH . 
G 4 HOH A 34 554 56 HOH HOH . 
G 4 HOH A 35 555 57 HOH HOH . 
G 4 HOH A 36 556 60 HOH HOH . 
G 4 HOH A 37 557 61 HOH HOH . 
G 4 HOH A 38 558 66 HOH HOH . 
G 4 HOH A 39 559 71 HOH HOH . 
G 4 HOH A 40 560 72 HOH HOH . 
G 4 HOH A 41 561 77 HOH HOH . 
G 4 HOH A 42 562 78 HOH HOH . 
G 4 HOH A 43 563 80 HOH HOH . 
G 4 HOH A 44 564 84 HOH HOH . 
H 4 HOH B 1 1521 1 HOH HOH . 
H 4 HOH B 2 1522 3 HOH HOH . 
H 4 HOH B 3 1523 5 HOH HOH . 
H 4 HOH B 4 1524 6 HOH HOH . 
H 4 HOH B 5 1525 10 HOH HOH . 
H 4 HOH B 6 1526 12 HOH HOH . 
H 4 HOH B 7 1527 14 HOH HOH . 
H 4 HOH B 8 1528 16 HOH HOH . 
H 4 HOH B 9 1529 20 HOH HOH . 
H 4 HOH B 10 1530 23 HOH HOH . 
H 4 HOH B 11 1531 27 HOH HOH . 
H 4 HOH B 12 1532 28 HOH HOH . 
H 4 HOH B 13 1533 32 HOH HOH . 
H 4 HOH B 14 1534 39 HOH HOH . 
H 4 HOH B 15 1535 42 HOH HOH . 
H 4 HOH B 16 1536 45 HOH HOH . 
H 4 HOH B 17 1537 47 HOH HOH . 
H 4 HOH B 18 1538 49 HOH HOH . 
H 4 HOH B 19 1539 50 HOH HOH . 
H 4 HOH B 20 1540 51 HOH HOH . 
H 4 HOH B 21 1541 54 HOH HOH . 
H 4 HOH B 22 1542 55 HOH HOH . 
H 4 HOH B 23 1543 58 HOH HOH . 
H 4 HOH B 24 1544 59 HOH HOH . 
H 4 HOH B 25 1545 62 HOH HOH . 
H 4 HOH B 26 1546 63 HOH HOH . 
H 4 HOH B 27 1547 64 HOH HOH . 
H 4 HOH B 28 1548 65 HOH HOH . 
H 4 HOH B 29 1549 67 HOH HOH . 
H 4 HOH B 30 1550 68 HOH HOH . 
H 4 HOH B 31 1551 69 HOH HOH . 
H 4 HOH B 32 1552 70 HOH HOH . 
H 4 HOH B 33 1553 73 HOH HOH . 
H 4 HOH B 34 1554 74 HOH HOH . 
H 4 HOH B 35 1555 75 HOH HOH . 
H 4 HOH B 36 1556 76 HOH HOH . 
H 4 HOH B 37 1557 79 HOH HOH . 
H 4 HOH B 38 1558 81 HOH HOH . 
H 4 HOH B 39 1559 82 HOH HOH . 
H 4 HOH B 40 1560 83 HOH HOH . 
H 4 HOH B 41 1561 85 HOH HOH . 
H 4 HOH B 42 1562 86 HOH HOH . 
H 4 HOH B 43 1563 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KMT . . . F 3 42.833 79.472 23.814 1 43.41 ? C1 KMT 1520 B 1 
HETATM 2 O O1 KMT . . . F 3 42.7 80.557 23.433 1 44.7 ? O1 KMT 1520 B 1 
HETATM 3 O O2 KMT . . . F 3 41.897 78.625 24.131 1 43.21 ? O2 KMT 1520 B 1 
HETATM 4 C C2 KMT . . . F 3 44.209 78.939 23.962 1 42.71 ? C2 KMT 1520 B 1 
HETATM 5 O O5 KMT . . . F 3 44.956 79.491 24.812 1 39.73 ? O5 KMT 1520 B 1 
HETATM 6 C C3 KMT . . . F 3 44.649 77.814 23.127 1 43.14 ? C3 KMT 1520 B 1 
HETATM 7 C C4 KMT . . . F 3 44.728 78.294 21.675 1 41.75 ? C4 KMT 1520 B 1 
HETATM 8 S S1 KMT . . . F 3 45.23 77.041 20.546 1 45.21 ? S1 KMT 1520 B 1 
HETATM 9 C C5 KMT . . . F 3 43.912 75.801 20.648 1 45.38 ? C5 KMT 1520 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#