data_1V2F
#
_model_server_result.job_id            BQpQRCVlTLaApa9iwEm9ag 
_model_server_result.datetime_utc      '2024-11-27 15:14:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":510}' 
#
_entry.id    1V2F 
#
_exptl.entry_id    1V2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V2F 
_cell.length_a            123.85 
_cell.length_b            123.85 
_cell.length_c            122.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 222 A LYS 222 1_555 C C4A PLP . A PLP 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? 
covale ? covale2 B NZ LYS 222 B LYS 222 1_555 E C4A PLP . B PLP 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 281 n y 
N1 C6 PLP sing 282 n y 
C2 C2A PLP sing 283 n n 
C2 C3 PLP sing 284 n y 
C2A H2A1 PLP sing 285 n n 
C2A H2A2 PLP sing 286 n n 
C2A H2A3 PLP sing 287 n n 
C3 O3 PLP sing 288 n n 
C3 C4 PLP doub 289 n y 
O3 HO3 PLP sing 290 n n 
C4 C4A PLP sing 291 n n 
C4 C5 PLP sing 292 n y 
C4A O4A PLP doub 293 n n 
C4A H4A PLP sing 294 n n 
C5 C6 PLP doub 295 n y 
C5 C5A PLP sing 296 n n 
C6 H6 PLP sing 297 n n 
C5A O4P PLP sing 298 n n 
C5A H5A1 PLP sing 299 n n 
C5A H5A2 PLP sing 300 n n 
O4P P PLP sing 301 n n 
P O1P PLP doub 302 n n 
P O2P PLP sing 303 n n 
P O3P PLP sing 304 n n 
O2P HOP2 PLP sing 305 n n 
O3P HOP3 PLP sing 306 n n 
#
_atom_sites.entry_id                     1V2F 
_atom_sites.fract_transf_matrix[1][1]    0.008074 
_atom_sites.fract_transf_matrix[1][2]    0.004662 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009323 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008163 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 510 510 PLP PLP . 
D 3 HCI A 1 520 520 HCI 3PP . 
E 2 PLP B 1 1510 1510 PLP PLP . 
F 3 HCI B 1 1520 1520 HCI 3PP . 
G 4 HOH A 1 521 1 HOH HOH . 
G 4 HOH A 2 522 4 HOH HOH . 
G 4 HOH A 3 523 5 HOH HOH . 
G 4 HOH A 4 524 6 HOH HOH . 
G 4 HOH A 5 525 8 HOH HOH . 
G 4 HOH A 6 526 9 HOH HOH . 
G 4 HOH A 7 527 11 HOH HOH . 
G 4 HOH A 8 528 12 HOH HOH . 
G 4 HOH A 9 529 13 HOH HOH . 
G 4 HOH A 10 530 14 HOH HOH . 
G 4 HOH A 11 531 15 HOH HOH . 
G 4 HOH A 12 532 16 HOH HOH . 
G 4 HOH A 13 533 17 HOH HOH . 
G 4 HOH A 14 534 19 HOH HOH . 
G 4 HOH A 15 535 20 HOH HOH . 
G 4 HOH A 16 536 21 HOH HOH . 
G 4 HOH A 17 537 22 HOH HOH . 
G 4 HOH A 18 538 26 HOH HOH . 
G 4 HOH A 19 539 27 HOH HOH . 
G 4 HOH A 20 540 28 HOH HOH . 
G 4 HOH A 21 541 31 HOH HOH . 
G 4 HOH A 22 542 33 HOH HOH . 
G 4 HOH A 23 543 34 HOH HOH . 
G 4 HOH A 24 544 36 HOH HOH . 
G 4 HOH A 25 545 39 HOH HOH . 
G 4 HOH A 26 546 41 HOH HOH . 
G 4 HOH A 27 547 44 HOH HOH . 
G 4 HOH A 28 548 45 HOH HOH . 
G 4 HOH A 29 549 47 HOH HOH . 
G 4 HOH A 30 550 49 HOH HOH . 
G 4 HOH A 31 551 52 HOH HOH . 
G 4 HOH A 32 552 55 HOH HOH . 
G 4 HOH A 33 553 57 HOH HOH . 
G 4 HOH A 34 554 58 HOH HOH . 
G 4 HOH A 35 555 63 HOH HOH . 
G 4 HOH A 36 556 64 HOH HOH . 
G 4 HOH A 37 557 65 HOH HOH . 
G 4 HOH A 38 558 66 HOH HOH . 
G 4 HOH A 39 559 68 HOH HOH . 
G 4 HOH A 40 560 69 HOH HOH . 
G 4 HOH A 41 561 70 HOH HOH . 
G 4 HOH A 42 562 72 HOH HOH . 
G 4 HOH A 43 563 73 HOH HOH . 
G 4 HOH A 44 564 74 HOH HOH . 
G 4 HOH A 45 565 75 HOH HOH . 
G 4 HOH A 46 566 76 HOH HOH . 
G 4 HOH A 47 567 78 HOH HOH . 
G 4 HOH A 48 568 81 HOH HOH . 
G 4 HOH A 49 569 82 HOH HOH . 
G 4 HOH A 50 570 83 HOH HOH . 
G 4 HOH A 51 571 85 HOH HOH . 
G 4 HOH A 52 572 86 HOH HOH . 
G 4 HOH A 53 573 87 HOH HOH . 
G 4 HOH A 54 574 91 HOH HOH . 
G 4 HOH A 55 575 92 HOH HOH . 
G 4 HOH A 56 576 94 HOH HOH . 
G 4 HOH A 57 577 99 HOH HOH . 
G 4 HOH A 58 578 102 HOH HOH . 
G 4 HOH A 59 579 103 HOH HOH . 
G 4 HOH A 60 580 106 HOH HOH . 
G 4 HOH A 61 581 107 HOH HOH . 
G 4 HOH A 62 582 108 HOH HOH . 
G 4 HOH A 63 583 112 HOH HOH . 
G 4 HOH A 64 584 117 HOH HOH . 
G 4 HOH A 65 585 120 HOH HOH . 
G 4 HOH A 66 586 122 HOH HOH . 
G 4 HOH A 67 587 124 HOH HOH . 
G 4 HOH A 68 588 126 HOH HOH . 
G 4 HOH A 69 589 127 HOH HOH . 
G 4 HOH A 70 590 130 HOH HOH . 
G 4 HOH A 71 591 133 HOH HOH . 
G 4 HOH A 72 592 134 HOH HOH . 
G 4 HOH A 73 593 135 HOH HOH . 
G 4 HOH A 74 594 136 HOH HOH . 
G 4 HOH A 75 595 140 HOH HOH . 
G 4 HOH A 76 596 141 HOH HOH . 
G 4 HOH A 77 597 143 HOH HOH . 
G 4 HOH A 78 598 144 HOH HOH . 
G 4 HOH A 79 599 147 HOH HOH . 
G 4 HOH A 80 600 148 HOH HOH . 
G 4 HOH A 81 601 149 HOH HOH . 
G 4 HOH A 82 602 152 HOH HOH . 
G 4 HOH A 83 603 154 HOH HOH . 
G 4 HOH A 84 604 157 HOH HOH . 
G 4 HOH A 85 605 158 HOH HOH . 
G 4 HOH A 86 606 160 HOH HOH . 
G 4 HOH A 87 607 161 HOH HOH . 
G 4 HOH A 88 608 162 HOH HOH . 
G 4 HOH A 89 609 164 HOH HOH . 
G 4 HOH A 90 610 165 HOH HOH . 
G 4 HOH A 91 611 167 HOH HOH . 
H 4 HOH B 1 1521 2 HOH HOH . 
H 4 HOH B 2 1522 3 HOH HOH . 
H 4 HOH B 3 1523 7 HOH HOH . 
H 4 HOH B 4 1524 10 HOH HOH . 
H 4 HOH B 5 1525 18 HOH HOH . 
H 4 HOH B 6 1526 23 HOH HOH . 
H 4 HOH B 7 1527 24 HOH HOH . 
H 4 HOH B 8 1528 25 HOH HOH . 
H 4 HOH B 9 1529 29 HOH HOH . 
H 4 HOH B 10 1530 30 HOH HOH . 
H 4 HOH B 11 1531 32 HOH HOH . 
H 4 HOH B 12 1532 35 HOH HOH . 
H 4 HOH B 13 1533 37 HOH HOH . 
H 4 HOH B 14 1534 38 HOH HOH . 
H 4 HOH B 15 1535 40 HOH HOH . 
H 4 HOH B 16 1536 42 HOH HOH . 
H 4 HOH B 17 1537 43 HOH HOH . 
H 4 HOH B 18 1538 46 HOH HOH . 
H 4 HOH B 19 1539 48 HOH HOH . 
H 4 HOH B 20 1540 50 HOH HOH . 
H 4 HOH B 21 1541 51 HOH HOH . 
H 4 HOH B 22 1542 53 HOH HOH . 
H 4 HOH B 23 1543 54 HOH HOH . 
H 4 HOH B 24 1544 56 HOH HOH . 
H 4 HOH B 25 1545 59 HOH HOH . 
H 4 HOH B 26 1546 60 HOH HOH . 
H 4 HOH B 27 1547 61 HOH HOH . 
H 4 HOH B 28 1548 62 HOH HOH . 
H 4 HOH B 29 1549 67 HOH HOH . 
H 4 HOH B 30 1550 71 HOH HOH . 
H 4 HOH B 31 1551 77 HOH HOH . 
H 4 HOH B 32 1552 79 HOH HOH . 
H 4 HOH B 33 1553 80 HOH HOH . 
H 4 HOH B 34 1554 84 HOH HOH . 
H 4 HOH B 35 1555 88 HOH HOH . 
H 4 HOH B 36 1556 89 HOH HOH . 
H 4 HOH B 37 1557 90 HOH HOH . 
H 4 HOH B 38 1558 93 HOH HOH . 
H 4 HOH B 39 1559 95 HOH HOH . 
H 4 HOH B 40 1560 96 HOH HOH . 
H 4 HOH B 41 1561 97 HOH HOH . 
H 4 HOH B 42 1562 98 HOH HOH . 
H 4 HOH B 43 1563 100 HOH HOH . 
H 4 HOH B 44 1564 101 HOH HOH . 
H 4 HOH B 45 1565 104 HOH HOH . 
H 4 HOH B 46 1566 105 HOH HOH . 
H 4 HOH B 47 1567 109 HOH HOH . 
H 4 HOH B 48 1568 110 HOH HOH . 
H 4 HOH B 49 1569 111 HOH HOH . 
H 4 HOH B 50 1570 113 HOH HOH . 
H 4 HOH B 51 1571 114 HOH HOH . 
H 4 HOH B 52 1572 115 HOH HOH . 
H 4 HOH B 53 1573 116 HOH HOH . 
H 4 HOH B 54 1574 118 HOH HOH . 
H 4 HOH B 55 1575 119 HOH HOH . 
H 4 HOH B 56 1576 121 HOH HOH . 
H 4 HOH B 57 1577 123 HOH HOH . 
H 4 HOH B 58 1578 125 HOH HOH . 
H 4 HOH B 59 1579 128 HOH HOH . 
H 4 HOH B 60 1580 129 HOH HOH . 
H 4 HOH B 61 1581 131 HOH HOH . 
H 4 HOH B 62 1582 132 HOH HOH . 
H 4 HOH B 63 1583 137 HOH HOH . 
H 4 HOH B 64 1584 138 HOH HOH . 
H 4 HOH B 65 1585 139 HOH HOH . 
H 4 HOH B 66 1586 142 HOH HOH . 
H 4 HOH B 67 1587 145 HOH HOH . 
H 4 HOH B 68 1588 146 HOH HOH . 
H 4 HOH B 69 1589 150 HOH HOH . 
H 4 HOH B 70 1590 151 HOH HOH . 
H 4 HOH B 71 1591 153 HOH HOH . 
H 4 HOH B 72 1592 155 HOH HOH . 
H 4 HOH B 73 1593 156 HOH HOH . 
H 4 HOH B 74 1594 159 HOH HOH . 
H 4 HOH B 75 1595 163 HOH HOH . 
H 4 HOH B 76 1596 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 83.008 25.057 31.452 1 15.1 ? N1 PLP 510 A 1 
HETATM 2 C C2 PLP . . . C 2 83.34 26.368 31.558 1 15.48 ? C2 PLP 510 A 1 
HETATM 3 C C2A PLP . . . C 2 82.609 27.232 32.621 1 13.09 ? C2A PLP 510 A 1 
HETATM 4 C C3 PLP . . . C 2 84.308 26.911 30.719 1 17.71 ? C3 PLP 510 A 1 
HETATM 5 O O3 PLP . . . C 2 84.649 28.276 30.829 1 20.96 ? O3 PLP 510 A 1 
HETATM 6 C C4 PLP . . . C 2 84.927 26.101 29.776 1 17.61 ? C4 PLP 510 A 1 
HETATM 7 C C4A PLP . . . C 2 86.03 26.708 28.873 1 19.97 ? C4A PLP 510 A 1 
HETATM 8 C C5 PLP . . . C 2 84.555 24.733 29.696 1 19.04 ? C5 PLP 510 A 1 
HETATM 9 C C6 PLP . . . C 2 83.594 24.234 30.543 1 17.49 ? C6 PLP 510 A 1 
HETATM 10 C C5A PLP . . . C 2 85.125 23.742 28.682 1 18.35 ? C5A PLP 510 A 1 
HETATM 11 O O4P PLP . . . C 2 86.489 23.388 28.827 1 21.61 ? O4P PLP 510 A 1 
HETATM 12 P P PLP . . . C 2 87.189 22.456 27.766 1 20.18 ? P PLP 510 A 1 
HETATM 13 O O1P PLP . . . C 2 88.259 21.805 28.534 1 19.86 ? O1P PLP 510 A 1 
HETATM 14 O O2P PLP . . . C 2 87.676 23.557 26.766 1 16.21 ? O2P PLP 510 A 1 
HETATM 15 O O3P PLP . . . C 2 86.252 21.567 27.015 1 20 ? O3P PLP 510 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           591 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#