data_1V2K # _model_server_result.job_id APZx60zy7qDoMFoDzaQIaA _model_server_result.datetime_utc '2024-11-25 11:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1V2K # _exptl.entry_id 1V2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V2K _cell.length_a 54.75 _cell.length_b 54.75 _cell.length_c 144.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc5 C CA CA . T CA 480 1_555 E O HOH . T HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc6 C CA CA . T CA 480 1_555 E O HOH . T HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id ZEN _chem_comp.mon_nstd_flag . _chem_comp.name "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ZEN doub 380 n y N1 C6 ZEN sing 381 n y C2 C3 ZEN sing 382 n y C2 H2 ZEN sing 383 n n C3 C4 ZEN doub 384 n y C3 H3 ZEN sing 385 n n C5 C6 ZEN doub 386 n y C5 C4 ZEN sing 387 n y C5 H5 ZEN sing 388 n n C6 H6 ZEN sing 389 n n C4 N7 ZEN sing 390 n n N7 C8 ZEN sing 391 n n N7 C12 ZEN sing 392 n n C8 C9 ZEN sing 393 n n C8 H82 ZEN sing 394 n n C8 H81 ZEN sing 395 n n C9 C10 ZEN sing 396 n n C9 H92 ZEN sing 397 n n C9 H91 ZEN sing 398 n n C11 C12 ZEN sing 399 n n C11 C10 ZEN sing 400 n n C11 H112 ZEN sing 401 n n C11 H111 ZEN sing 402 n n C12 H122 ZEN sing 403 n n C12 H121 ZEN sing 404 n n C10 C13 ZEN sing 405 n n C10 H10 ZEN sing 406 n n C13 O23 ZEN doub 407 n n C13 N14 ZEN sing 408 n n N14 C15 ZEN sing 409 n n N14 C19 ZEN sing 410 n n C15 C16 ZEN sing 411 n n C15 H152 ZEN sing 412 n n C15 H151 ZEN sing 413 n n C16 N17 ZEN sing 414 n n C16 H162 ZEN sing 415 n n C16 H161 ZEN sing 416 n n C18 C19 ZEN sing 417 n n C18 N17 ZEN sing 418 n n C18 H182 ZEN sing 419 n n C18 H181 ZEN sing 420 n n C19 H192 ZEN sing 421 n n C19 H191 ZEN sing 422 n n N17 S20 ZEN sing 423 n n S20 O21 ZEN doub 424 n n S20 O22 ZEN doub 425 n n S20 C24 ZEN sing 426 n n C24 C25 ZEN doub 427 n y C24 C33 ZEN sing 428 n y C25 C26 ZEN sing 429 n y C25 H25 ZEN sing 430 n n C33 C34 ZEN doub 431 n y C33 H33 ZEN sing 432 n n C34 C27 ZEN sing 433 n y C34 H34 ZEN sing 434 n n C26 C27 ZEN doub 435 n y C26 C31 ZEN sing 436 n y C27 C28 ZEN sing 437 n y C28 C29 ZEN doub 438 n y C28 H28 ZEN sing 439 n n C30 C31 ZEN doub 440 n y C30 C29 ZEN sing 441 n y C30 H30 ZEN sing 442 n n C31 H31 ZEN sing 443 n n C29 CL32 ZEN sing 444 n n # _atom_sites.entry_id 1V2K _atom_sites.fract_transf_matrix[1][1] 0.018265 _atom_sites.fract_transf_matrix[1][2] 0.010545 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 T 1 600 600 SO4 SO4 . C 3 CA T 1 480 480 CA CA . D 4 ZEN T 1 1 1 ZEN ZEN . E 5 HOH T 1 601 2 HOH TIP . E 5 HOH T 2 602 3 HOH TIP . E 5 HOH T 3 603 4 HOH TIP . E 5 HOH T 4 604 5 HOH TIP . E 5 HOH T 5 605 6 HOH TIP . E 5 HOH T 6 606 7 HOH TIP . E 5 HOH T 7 607 8 HOH TIP . E 5 HOH T 8 608 9 HOH TIP . E 5 HOH T 9 609 10 HOH TIP . E 5 HOH T 10 610 11 HOH TIP . E 5 HOH T 11 611 12 HOH TIP . E 5 HOH T 12 612 13 HOH TIP . E 5 HOH T 13 613 14 HOH TIP . E 5 HOH T 14 614 15 HOH TIP . E 5 HOH T 15 615 17 HOH TIP . E 5 HOH T 16 616 18 HOH TIP . E 5 HOH T 17 617 19 HOH TIP . E 5 HOH T 18 618 20 HOH TIP . E 5 HOH T 19 619 21 HOH TIP . E 5 HOH T 20 620 22 HOH TIP . E 5 HOH T 21 621 23 HOH TIP . E 5 HOH T 22 622 24 HOH TIP . E 5 HOH T 23 623 25 HOH TIP . E 5 HOH T 24 624 26 HOH TIP . E 5 HOH T 25 625 29 HOH TIP . E 5 HOH T 26 626 30 HOH TIP . E 5 HOH T 27 627 31 HOH TIP . E 5 HOH T 28 628 32 HOH TIP . E 5 HOH T 29 629 33 HOH TIP . E 5 HOH T 30 630 34 HOH TIP . E 5 HOH T 31 631 37 HOH TIP . E 5 HOH T 32 632 38 HOH TIP . E 5 HOH T 33 633 39 HOH TIP . E 5 HOH T 34 634 41 HOH TIP . E 5 HOH T 35 635 42 HOH TIP . E 5 HOH T 36 636 43 HOH TIP . E 5 HOH T 37 637 44 HOH TIP . E 5 HOH T 38 638 47 HOH TIP . E 5 HOH T 39 639 48 HOH TIP . E 5 HOH T 40 640 50 HOH TIP . E 5 HOH T 41 641 51 HOH TIP . E 5 HOH T 42 642 55 HOH TIP . E 5 HOH T 43 643 58 HOH TIP . E 5 HOH T 44 644 61 HOH TIP . E 5 HOH T 45 645 66 HOH TIP . E 5 HOH T 46 646 67 HOH TIP . E 5 HOH T 47 647 68 HOH TIP . E 5 HOH T 48 648 72 HOH TIP . E 5 HOH T 49 649 73 HOH TIP . E 5 HOH T 50 650 75 HOH TIP . E 5 HOH T 51 651 79 HOH TIP . E 5 HOH T 52 652 80 HOH TIP . E 5 HOH T 53 653 96 HOH TIP . E 5 HOH T 54 654 100 HOH TIP . E 5 HOH T 55 655 109 HOH TIP . E 5 HOH T 56 656 116 HOH TIP . E 5 HOH T 57 657 134 HOH TIP . E 5 HOH T 58 658 137 HOH TIP . E 5 HOH T 59 659 299 HOH TIP . E 5 HOH T 60 660 338 HOH TIP . E 5 HOH T 61 661 393 HOH TIP . E 5 HOH T 62 662 451 HOH TIP . E 5 HOH T 63 663 452 HOH TIP . E 5 HOH T 64 664 453 HOH TIP . E 5 HOH T 65 665 454 HOH TIP . E 5 HOH T 66 666 455 HOH TIP . E 5 HOH T 67 667 456 HOH TIP . E 5 HOH T 68 668 457 HOH TIP . E 5 HOH T 69 669 901 HOH TIP . E 5 HOH T 70 670 902 HOH TIP . E 5 HOH T 71 671 903 HOH TIP . E 5 HOH T 72 672 904 HOH TIP . E 5 HOH T 73 673 905 HOH TIP . E 5 HOH T 74 674 906 HOH TIP . E 5 HOH T 75 675 907 HOH TIP . E 5 HOH T 76 676 908 HOH TIP . E 5 HOH T 77 677 909 HOH TIP . E 5 HOH T 78 678 910 HOH TIP . E 5 HOH T 79 679 911 HOH TIP . E 5 HOH T 80 680 912 HOH TIP . E 5 HOH T 81 681 913 HOH TIP . E 5 HOH T 82 682 914 HOH TIP . E 5 HOH T 83 683 915 HOH TIP . E 5 HOH T 84 684 916 HOH TIP . E 5 HOH T 85 685 917 HOH TIP . E 5 HOH T 86 686 918 HOH TIP . E 5 HOH T 87 687 920 HOH TIP . E 5 HOH T 88 688 921 HOH TIP . E 5 HOH T 89 689 922 HOH TIP . E 5 HOH T 90 690 923 HOH TIP . E 5 HOH T 91 691 924 HOH TIP . E 5 HOH T 92 692 925 HOH TIP . E 5 HOH T 93 693 926 HOH TIP . E 5 HOH T 94 694 927 HOH TIP . E 5 HOH T 95 695 928 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEN . . . D 4 43.128 73.117 -26.498 1 45.78 ? N1 ZEN 1 T 1 HETATM 2 C C2 ZEN . . . D 4 43.591 74.398 -26.291 1 46.3 ? C2 ZEN 1 T 1 HETATM 3 C C3 ZEN . . . D 4 44.83 74.805 -26.864 1 46.21 ? C3 ZEN 1 T 1 HETATM 4 C C5 ZEN . . . D 4 45.06 72.541 -27.845 1 45.77 ? C5 ZEN 1 T 1 HETATM 5 C C6 ZEN . . . D 4 43.821 72.197 -27.247 1 45.39 ? C6 ZEN 1 T 1 HETATM 6 C C4 ZEN . . . D 4 45.582 73.862 -27.658 1 46.07 ? C4 ZEN 1 T 1 HETATM 7 N N7 ZEN . . . D 4 46.847 74.248 -28.262 1 45.17 ? N7 ZEN 1 T 1 HETATM 8 C C8 ZEN . . . D 4 47.537 75.546 -27.914 1 44.49 ? C8 ZEN 1 T 1 HETATM 9 C C9 ZEN . . . D 4 49.034 75.308 -27.547 1 44.09 ? C9 ZEN 1 T 1 HETATM 10 C C11 ZEN . . . D 4 49.058 73.222 -28.989 1 43.36 ? C11 ZEN 1 T 1 HETATM 11 C C12 ZEN . . . D 4 47.543 73.373 -29.284 1 44.53 ? C12 ZEN 1 T 1 HETATM 12 C C10 ZEN . . . D 4 49.758 74.616 -28.749 1 42.6 ? C10 ZEN 1 T 1 HETATM 13 C C13 ZEN . . . D 4 51.249 74.343 -28.481 1 40.66 ? C13 ZEN 1 T 1 HETATM 14 O O23 ZEN . . . D 4 51.545 74.155 -27.279 1 41.36 ? O23 ZEN 1 T 1 HETATM 15 N N14 ZEN . . . D 4 52.192 74.297 -29.446 1 37.38 ? N14 ZEN 1 T 1 HETATM 16 C C15 ZEN . . . D 4 51.914 74.527 -30.912 1 34.92 ? C15 ZEN 1 T 1 HETATM 17 C C16 ZEN . . . D 4 52.527 73.344 -31.714 1 32.42 ? C16 ZEN 1 T 1 HETATM 18 C C18 ZEN . . . D 4 54.101 72.751 -29.873 1 33.4 ? C18 ZEN 1 T 1 HETATM 19 C C19 ZEN . . . D 4 53.621 74.012 -29.085 1 36.08 ? C19 ZEN 1 T 1 HETATM 20 N N17 ZEN . . . D 4 53.956 73.093 -31.326 1 31.89 ? N17 ZEN 1 T 1 HETATM 21 S S20 ZEN . . . D 4 54.669 71.994 -32.34 1 30.31 ? S20 ZEN 1 T 1 HETATM 22 O O21 ZEN . . . D 4 56.038 71.778 -31.909 1 31.84 ? O21 ZEN 1 T 1 HETATM 23 O O22 ZEN . . . D 4 54.525 72.555 -33.659 1 31.36 ? O22 ZEN 1 T 1 HETATM 24 C C24 ZEN . . . D 4 53.813 70.419 -32.351 1 28.04 ? C24 ZEN 1 T 1 HETATM 25 C C25 ZEN . . . D 4 54.064 69.41 -31.346 1 23.38 ? C25 ZEN 1 T 1 HETATM 26 C C33 ZEN . . . D 4 52.809 70.182 -33.352 1 24.72 ? C33 ZEN 1 T 1 HETATM 27 C C34 ZEN . . . D 4 52.075 68.971 -33.381 1 23.92 ? C34 ZEN 1 T 1 HETATM 28 C C26 ZEN . . . D 4 53.329 68.18 -31.366 1 22.02 ? C26 ZEN 1 T 1 HETATM 29 C C27 ZEN . . . D 4 52.321 67.972 -32.403 1 21.24 ? C27 ZEN 1 T 1 HETATM 30 C C28 ZEN . . . D 4 51.592 66.789 -32.431 1 18.05 ? C28 ZEN 1 T 1 HETATM 31 C C30 ZEN . . . D 4 52.8 65.953 -30.435 1 18.21 ? C30 ZEN 1 T 1 HETATM 32 C C31 ZEN . . . D 4 53.558 67.158 -30.388 1 20.39 ? C31 ZEN 1 T 1 HETATM 33 C C29 ZEN . . . D 4 51.815 65.782 -31.464 1 15.56 ? C29 ZEN 1 T 1 HETATM 34 CL CL32 ZEN . . . D 4 50.867 64.355 -31.564 1 1 ? CL32 ZEN 1 T 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #