data_1V2L
#
_model_server_result.job_id            0SgkclV4ooED2YlROAjQMQ 
_model_server_result.datetime_utc      '2024-10-12 16:38:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    1V2L 
#
_exptl.entry_id    1V2L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V2L 
_cell.length_a            54.68 
_cell.length_b            54.68 
_cell.length_c            136.46 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc2 A O ASN 54 T ASN 72 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc3 A O VAL 57 T VAL 75 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc5 D CA CA . T CA 480 1_555 F O HOH . T HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1V2L 
_atom_sites.fract_transf_matrix[1][1]    0.018288 
_atom_sites.fract_transf_matrix[1][2]    0.010559 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 T 1 601 601 SO4 SO4 . 
C 2 SO4 T 1 600 600 SO4 SO4 . 
D 3 CA T 1 480 480 CA CA . 
E 4 BEN T 1 1 1 BEN BEN . 
F 5 HOH T 1 602 2 HOH TIP . 
F 5 HOH T 2 603 3 HOH TIP . 
F 5 HOH T 3 604 4 HOH TIP . 
F 5 HOH T 4 605 5 HOH TIP . 
F 5 HOH T 5 606 6 HOH TIP . 
F 5 HOH T 6 607 7 HOH TIP . 
F 5 HOH T 7 608 8 HOH TIP . 
F 5 HOH T 8 609 9 HOH TIP . 
F 5 HOH T 9 610 10 HOH TIP . 
F 5 HOH T 10 611 11 HOH TIP . 
F 5 HOH T 11 612 12 HOH TIP . 
F 5 HOH T 12 613 13 HOH TIP . 
F 5 HOH T 13 614 14 HOH TIP . 
F 5 HOH T 14 615 15 HOH TIP . 
F 5 HOH T 15 616 16 HOH TIP . 
F 5 HOH T 16 617 17 HOH TIP . 
F 5 HOH T 17 618 19 HOH TIP . 
F 5 HOH T 18 619 20 HOH TIP . 
F 5 HOH T 19 620 21 HOH TIP . 
F 5 HOH T 20 621 23 HOH TIP . 
F 5 HOH T 21 622 24 HOH TIP . 
F 5 HOH T 22 623 25 HOH TIP . 
F 5 HOH T 23 624 26 HOH TIP . 
F 5 HOH T 24 625 27 HOH TIP . 
F 5 HOH T 25 626 28 HOH TIP . 
F 5 HOH T 26 627 29 HOH TIP . 
F 5 HOH T 27 628 30 HOH TIP . 
F 5 HOH T 28 629 31 HOH TIP . 
F 5 HOH T 29 630 32 HOH TIP . 
F 5 HOH T 30 631 33 HOH TIP . 
F 5 HOH T 31 632 34 HOH TIP . 
F 5 HOH T 32 633 35 HOH TIP . 
F 5 HOH T 33 634 36 HOH TIP . 
F 5 HOH T 34 635 37 HOH TIP . 
F 5 HOH T 35 636 38 HOH TIP . 
F 5 HOH T 36 637 39 HOH TIP . 
F 5 HOH T 37 638 40 HOH TIP . 
F 5 HOH T 38 639 41 HOH TIP . 
F 5 HOH T 39 640 42 HOH TIP . 
F 5 HOH T 40 641 43 HOH TIP . 
F 5 HOH T 41 642 44 HOH TIP . 
F 5 HOH T 42 643 45 HOH TIP . 
F 5 HOH T 43 644 46 HOH TIP . 
F 5 HOH T 44 645 47 HOH TIP . 
F 5 HOH T 45 646 48 HOH TIP . 
F 5 HOH T 46 647 49 HOH TIP . 
F 5 HOH T 47 648 50 HOH TIP . 
F 5 HOH T 48 649 51 HOH TIP . 
F 5 HOH T 49 650 52 HOH TIP . 
F 5 HOH T 50 651 53 HOH TIP . 
F 5 HOH T 51 652 54 HOH TIP . 
F 5 HOH T 52 653 55 HOH TIP . 
F 5 HOH T 53 654 56 HOH TIP . 
F 5 HOH T 54 655 57 HOH TIP . 
F 5 HOH T 55 656 58 HOH TIP . 
F 5 HOH T 56 657 59 HOH TIP . 
F 5 HOH T 57 658 60 HOH TIP . 
F 5 HOH T 58 659 61 HOH TIP . 
F 5 HOH T 59 660 62 HOH TIP . 
F 5 HOH T 60 661 63 HOH TIP . 
F 5 HOH T 61 662 64 HOH TIP . 
F 5 HOH T 62 663 65 HOH TIP . 
F 5 HOH T 63 664 66 HOH TIP . 
F 5 HOH T 64 665 67 HOH TIP . 
F 5 HOH T 65 666 68 HOH TIP . 
F 5 HOH T 66 667 69 HOH TIP . 
F 5 HOH T 67 668 70 HOH TIP . 
F 5 HOH T 68 669 71 HOH TIP . 
F 5 HOH T 69 670 72 HOH TIP . 
F 5 HOH T 70 671 73 HOH TIP . 
F 5 HOH T 71 672 74 HOH TIP . 
F 5 HOH T 72 673 75 HOH TIP . 
F 5 HOH T 73 674 76 HOH TIP . 
F 5 HOH T 74 675 77 HOH TIP . 
F 5 HOH T 75 676 78 HOH TIP . 
F 5 HOH T 76 677 80 HOH TIP . 
F 5 HOH T 77 678 81 HOH TIP . 
F 5 HOH T 78 679 82 HOH TIP . 
F 5 HOH T 79 680 83 HOH TIP . 
F 5 HOH T 80 681 84 HOH TIP . 
F 5 HOH T 81 682 85 HOH TIP . 
F 5 HOH T 82 683 86 HOH TIP . 
F 5 HOH T 83 684 87 HOH TIP . 
F 5 HOH T 84 685 88 HOH TIP . 
F 5 HOH T 85 686 89 HOH TIP . 
F 5 HOH T 86 687 90 HOH TIP . 
F 5 HOH T 87 688 91 HOH TIP . 
F 5 HOH T 88 689 92 HOH TIP . 
F 5 HOH T 89 690 93 HOH TIP . 
F 5 HOH T 90 691 94 HOH TIP . 
F 5 HOH T 91 692 96 HOH TIP . 
F 5 HOH T 92 693 97 HOH TIP . 
F 5 HOH T 93 694 98 HOH TIP . 
F 5 HOH T 94 695 99 HOH TIP . 
F 5 HOH T 95 696 100 HOH TIP . 
F 5 HOH T 96 697 101 HOH TIP . 
F 5 HOH T 97 698 102 HOH TIP . 
F 5 HOH T 98 699 103 HOH TIP . 
F 5 HOH T 99 700 104 HOH TIP . 
F 5 HOH T 100 701 105 HOH TIP . 
F 5 HOH T 101 702 106 HOH TIP . 
F 5 HOH T 102 703 107 HOH TIP . 
F 5 HOH T 103 704 108 HOH TIP . 
F 5 HOH T 104 705 109 HOH TIP . 
F 5 HOH T 105 706 111 HOH TIP . 
F 5 HOH T 106 707 112 HOH TIP . 
F 5 HOH T 107 708 113 HOH TIP . 
F 5 HOH T 108 709 114 HOH TIP . 
F 5 HOH T 109 710 116 HOH TIP . 
F 5 HOH T 110 711 117 HOH TIP . 
F 5 HOH T 111 712 119 HOH TIP . 
F 5 HOH T 112 713 120 HOH TIP . 
F 5 HOH T 113 714 121 HOH TIP . 
F 5 HOH T 114 715 123 HOH TIP . 
F 5 HOH T 115 716 124 HOH TIP . 
F 5 HOH T 116 717 126 HOH TIP . 
F 5 HOH T 117 718 127 HOH TIP . 
F 5 HOH T 118 719 128 HOH TIP . 
F 5 HOH T 119 720 129 HOH TIP . 
F 5 HOH T 120 721 132 HOH TIP . 
F 5 HOH T 121 722 133 HOH TIP . 
F 5 HOH T 122 723 134 HOH TIP . 
F 5 HOH T 123 724 136 HOH TIP . 
F 5 HOH T 124 725 138 HOH TIP . 
F 5 HOH T 125 726 139 HOH TIP . 
F 5 HOH T 126 727 140 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . E 4 53.22 67.262 -28.887 1 16.64 ? C1 BEN 1 T 1 
HETATM 2 C C2 BEN . . . E 4 52.625 66.884 -30.174 1 17.6 ? C2 BEN 1 T 1 
HETATM 3 C C3 BEN . . . E 4 52.363 67.891 -31.19 1 17.95 ? C3 BEN 1 T 1 
HETATM 4 C C4 BEN . . . E 4 52.693 69.285 -30.934 1 17.83 ? C4 BEN 1 T 1 
HETATM 5 C C5 BEN . . . E 4 53.279 69.672 -29.67 1 19.4 ? C5 BEN 1 T 1 
HETATM 6 C C6 BEN . . . E 4 53.543 68.667 -28.648 1 18.14 ? C6 BEN 1 T 1 
HETATM 7 C C BEN . . . E 4 53.501 66.2 -27.813 1 15.41 ? C BEN 1 T 1 
HETATM 8 N N1 BEN . . . E 4 54.264 66.503 -26.777 1 16.02 ? N1 BEN 1 T 1 
HETATM 9 N N2 BEN . . . E 4 52.987 64.994 -27.942 1 13.43 ? N2 BEN 1 T 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#