data_1V2N
#
_model_server_result.job_id            wsA1VSRYvzbWG2f3C-PRmA 
_model_server_result.datetime_utc      '2024-11-07 04:42:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    1V2N 
#
_exptl.entry_id    1V2N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.495 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V2N 
_cell.length_a            55.24 
_cell.length_b            55.24 
_cell.length_c            111.28 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc2 A O ASN 54 T ASN 72 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc3 A O VAL 57 T VAL 75 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc5 B CA CA . T CA 480 1_555 D O HOH . T HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc6 B CA CA . T CA 480 1_555 D O HOH . T HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
#
_chem_comp.formula           'C23 H28 N4 O' 
_chem_comp.formula_weight    376.495 
_chem_comp.id                BBA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     BIS-BENZAMIDINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 BBA sing 70 n n 
C8 C1 BBA sing 71 n n 
C8 H81 BBA sing 72 n n 
C8 H82 BBA sing 73 n n 
C9 C14 BBA doub 74 n y 
C9 C10 BBA sing 75 n y 
C14 C13 BBA sing 76 n y 
C14 H14 BBA sing 77 n n 
C13 C12 BBA doub 78 n y 
C13 H13 BBA sing 79 n n 
C10 C11 BBA doub 80 n y 
C10 H10 BBA sing 81 n n 
C11 C12 BBA sing 82 n y 
C11 H11 BBA sing 83 n n 
C12 C15 BBA sing 84 n n 
C15 N16 BBA sing 85 n n 
C15 N17 BBA doub 86 n n 
N16 HG11 BBA sing 87 n n 
N16 HG12 BBA sing 88 n n 
N17 HG2 BBA sing 89 n n 
C18 C19 BBA sing 90 n n 
C18 C5 BBA sing 91 n n 
C18 H181 BBA sing 92 n n 
C18 H182 BBA sing 93 n n 
C19 C20 BBA doub 94 n y 
C19 C24 BBA sing 95 n y 
C20 C21 BBA sing 96 n y 
C20 H20 BBA sing 97 n n 
C21 C22 BBA doub 98 n y 
C21 H21 BBA sing 99 n n 
C24 C23 BBA doub 100 n y 
C24 H24 BBA sing 101 n n 
C23 C22 BBA sing 102 n y 
C23 H23 BBA sing 103 n n 
C22 C25 BBA sing 104 n n 
C25 N26 BBA sing 105 n n 
C25 N27 BBA doub 106 n n 
N26 HG31 BBA sing 107 n n 
N26 HG32 BBA sing 108 n n 
N27 HG4 BBA sing 109 n n 
C1 C2 BBA sing 110 n n 
C1 C6 BBA sing 111 n n 
C1 H1 BBA sing 112 n n 
C2 C3 BBA sing 113 n n 
C2 H21A BBA sing 114 n n 
C2 H22 BBA sing 115 n n 
C3 C BBA sing 116 n n 
C3 H31 BBA sing 117 n n 
C3 H32 BBA sing 118 n n 
C C4 BBA sing 119 n n 
C H1A BBA sing 120 n n 
C H2 BBA sing 121 n n 
C4 C5 BBA sing 122 n n 
C4 H41 BBA sing 123 n n 
C4 H42 BBA sing 124 n n 
C5 C6 BBA sing 125 n n 
C5 H5 BBA sing 126 n n 
C6 O7 BBA doub 127 n n 
#
_atom_sites.entry_id                     1V2N 
_atom_sites.fract_transf_matrix[1][1]    0.018103 
_atom_sites.fract_transf_matrix[1][2]    0.010452 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA T 1 480 480 CA CA . 
C 3 BBA T 1 1 1 BBA ST3 . 
D 4 HOH T 1 501 501 HOH TIP . 
D 4 HOH T 2 502 502 HOH TIP . 
D 4 HOH T 3 503 503 HOH TIP . 
D 4 HOH T 4 504 504 HOH TIP . 
D 4 HOH T 5 505 505 HOH TIP . 
D 4 HOH T 6 506 506 HOH TIP . 
D 4 HOH T 7 507 507 HOH TIP . 
D 4 HOH T 8 508 508 HOH TIP . 
D 4 HOH T 9 509 509 HOH TIP . 
D 4 HOH T 10 510 510 HOH TIP . 
D 4 HOH T 11 511 511 HOH TIP . 
D 4 HOH T 12 512 512 HOH TIP . 
D 4 HOH T 13 513 515 HOH TIP . 
D 4 HOH T 14 514 516 HOH TIP . 
D 4 HOH T 15 515 517 HOH TIP . 
D 4 HOH T 16 516 518 HOH TIP . 
D 4 HOH T 17 517 519 HOH TIP . 
D 4 HOH T 18 518 520 HOH TIP . 
D 4 HOH T 19 519 522 HOH TIP . 
D 4 HOH T 20 520 523 HOH TIP . 
D 4 HOH T 21 521 524 HOH TIP . 
D 4 HOH T 22 522 525 HOH TIP . 
D 4 HOH T 23 523 526 HOH TIP . 
D 4 HOH T 24 524 527 HOH TIP . 
D 4 HOH T 25 525 528 HOH TIP . 
D 4 HOH T 26 526 529 HOH TIP . 
D 4 HOH T 27 527 531 HOH TIP . 
D 4 HOH T 28 528 532 HOH TIP . 
D 4 HOH T 29 529 533 HOH TIP . 
D 4 HOH T 30 530 534 HOH TIP . 
D 4 HOH T 31 531 535 HOH TIP . 
D 4 HOH T 32 532 537 HOH TIP . 
D 4 HOH T 33 533 538 HOH TIP . 
D 4 HOH T 34 534 541 HOH TIP . 
D 4 HOH T 35 535 544 HOH TIP . 
D 4 HOH T 36 536 546 HOH TIP . 
D 4 HOH T 37 537 548 HOH TIP . 
D 4 HOH T 38 538 549 HOH TIP . 
D 4 HOH T 39 539 550 HOH TIP . 
D 4 HOH T 40 540 551 HOH TIP . 
D 4 HOH T 41 541 556 HOH TIP . 
D 4 HOH T 42 542 559 HOH TIP . 
D 4 HOH T 43 543 562 HOH TIP . 
D 4 HOH T 44 544 563 HOH TIP . 
D 4 HOH T 45 545 566 HOH TIP . 
D 4 HOH T 46 546 567 HOH TIP . 
D 4 HOH T 47 547 572 HOH TIP . 
D 4 HOH T 48 548 574 HOH TIP . 
D 4 HOH T 49 549 575 HOH TIP . 
D 4 HOH T 50 550 576 HOH TIP . 
D 4 HOH T 51 551 595 HOH TIP . 
D 4 HOH T 52 552 596 HOH TIP . 
D 4 HOH T 53 553 599 HOH TIP . 
D 4 HOH T 54 554 600 HOH TIP . 
D 4 HOH T 55 555 608 HOH TIP . 
D 4 HOH T 56 556 625 HOH TIP . 
D 4 HOH T 57 557 630 HOH TIP . 
D 4 HOH T 58 558 632 HOH TIP . 
D 4 HOH T 59 559 636 HOH TIP . 
D 4 HOH T 60 560 646 HOH TIP . 
D 4 HOH T 61 561 648 HOH TIP . 
D 4 HOH T 62 562 649 HOH TIP . 
D 4 HOH T 63 563 513 HOH TIP . 
D 4 HOH T 64 564 514 HOH TIP . 
D 4 HOH T 65 565 521 HOH TIP . 
D 4 HOH T 66 566 530 HOH TIP . 
D 4 HOH T 67 567 536 HOH TIP . 
D 4 HOH T 68 568 539 HOH TIP . 
D 4 HOH T 69 569 542 HOH TIP . 
D 4 HOH T 70 570 545 HOH TIP . 
D 4 HOH T 71 571 552 HOH TIP . 
D 4 HOH T 72 572 569 HOH TIP . 
D 4 HOH T 73 573 573 HOH TIP . 
D 4 HOH T 74 574 582 HOH TIP . 
D 4 HOH T 75 575 588 HOH TIP . 
D 4 HOH T 76 576 609 HOH TIP . 
D 4 HOH T 77 577 611 HOH TIP . 
D 4 HOH T 78 578 612 HOH TIP . 
D 4 HOH T 79 579 613 HOH TIP . 
D 4 HOH T 80 580 627 HOH TIP . 
D 4 HOH T 81 581 633 HOH TIP . 
D 4 HOH T 82 582 639 HOH TIP . 
D 4 HOH T 83 583 644 HOH TIP . 
D 4 HOH T 84 584 800 HOH TIP . 
D 4 HOH T 85 585 801 HOH TIP . 
D 4 HOH T 86 586 803 HOH TIP . 
D 4 HOH T 87 587 804 HOH TIP . 
D 4 HOH T 88 588 805 HOH TIP . 
D 4 HOH T 89 589 807 HOH TIP . 
D 4 HOH T 90 590 809 HOH TIP . 
D 4 HOH T 91 591 810 HOH TIP . 
D 4 HOH T 92 592 811 HOH TIP . 
D 4 HOH T 93 593 812 HOH TIP . 
D 4 HOH T 94 594 813 HOH TIP . 
D 4 HOH T 95 595 814 HOH TIP . 
D 4 HOH T 96 596 815 HOH TIP . 
D 4 HOH T 97 597 31 HOH TIP . 
D 4 HOH T 98 598 46 HOH TIP . 
D 4 HOH T 99 599 47 HOH TIP . 
D 4 HOH T 100 600 63 HOH TIP . 
D 4 HOH T 101 601 74 HOH TIP . 
D 4 HOH T 102 602 75 HOH TIP . 
D 4 HOH T 103 603 86 HOH TIP . 
D 4 HOH T 104 604 88 HOH TIP . 
D 4 HOH T 105 605 91 HOH TIP . 
D 4 HOH T 106 606 92 HOH TIP . 
D 4 HOH T 107 607 98 HOH TIP . 
D 4 HOH T 108 608 99 HOH TIP . 
D 4 HOH T 109 609 101 HOH TIP . 
D 4 HOH T 110 610 104 HOH TIP . 
D 4 HOH T 111 611 109 HOH TIP . 
D 4 HOH T 112 612 110 HOH TIP . 
D 4 HOH T 113 613 111 HOH TIP . 
D 4 HOH T 114 614 114 HOH TIP . 
D 4 HOH T 115 615 121 HOH TIP . 
D 4 HOH T 116 616 123 HOH TIP . 
D 4 HOH T 117 617 124 HOH TIP . 
D 4 HOH T 118 618 125 HOH TIP . 
D 4 HOH T 119 619 126 HOH TIP . 
D 4 HOH T 120 620 145 HOH TIP . 
D 4 HOH T 121 621 147 HOH TIP . 
D 4 HOH T 122 622 148 HOH TIP . 
D 4 HOH T 123 623 164 HOH TIP . 
D 4 HOH T 124 624 345 HOH TIP . 
D 4 HOH T 125 625 403 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 BBA . . . C 3 43.606 22.617 51.103 1 21.81 ? C8 BBA 1 T 1 
HETATM 2 C C9 BBA . . . C 3 44.148 21.479 51.97 1 21.12 ? C9 BBA 1 T 1 
HETATM 3 C C14 BBA . . . C 3 44.963 21.729 53.122 1 19.48 ? C14 BBA 1 T 1 
HETATM 4 C C13 BBA . . . C 3 45.437 20.662 53.912 1 19.44 ? C13 BBA 1 T 1 
HETATM 5 C C10 BBA . . . C 3 43.852 20.133 51.606 1 19.71 ? C10 BBA 1 T 1 
HETATM 6 C C11 BBA . . . C 3 44.333 19.057 52.403 1 18.45 ? C11 BBA 1 T 1 
HETATM 7 C C12 BBA . . . C 3 45.14 19.32 53.549 1 19.36 ? C12 BBA 1 T 1 
HETATM 8 C C15 BBA . . . C 3 45.657 18.19 54.407 1 18.26 ? C15 BBA 1 T 1 
HETATM 9 N N16 BBA . . . C 3 45.128 16.934 54.296 1 15.48 ? N16 BBA 1 T 1 
HETATM 10 N N17 BBA . . . C 3 46.663 18.422 55.309 1 16.25 ? N17 BBA 1 T 1 
HETATM 11 C C18 BBA . . . C 3 42.113 26.248 54.323 1 25.38 ? C18 BBA 1 T 1 
HETATM 12 C C19 BBA . . . C 3 40.873 25.744 55.05 1 25.87 ? C19 BBA 1 T 1 
HETATM 13 C C20 BBA . . . C 3 40.89 25.61 56.469 1 27.74 ? C20 BBA 1 T 1 
HETATM 14 C C21 BBA . . . C 3 39.727 25.147 57.158 1 28.94 ? C21 BBA 1 T 1 
HETATM 15 C C24 BBA . . . C 3 39.69 25.408 54.332 1 26.36 ? C24 BBA 1 T 1 
HETATM 16 C C23 BBA . . . C 3 38.535 24.948 55.013 1 26.43 ? C23 BBA 1 T 1 
HETATM 17 C C22 BBA . . . C 3 38.542 24.814 56.425 1 29.22 ? C22 BBA 1 T 1 
HETATM 18 C C25 BBA . . . C 3 37.294 24.324 57.137 1 30.44 ? C25 BBA 1 T 1 
HETATM 19 N N26 BBA . . . C 3 36.508 23.358 56.562 1 32.35 ? N26 BBA 1 T 1 
HETATM 20 N N27 BBA . . . C 3 36.932 24.848 58.348 1 32.86 ? N27 BBA 1 T 1 
HETATM 21 C C1 BBA . . . C 3 43.056 23.797 51.51 1 22.52 ? C1 BBA 1 T 1 
HETATM 22 C C2 BBA . . . C 3 42.645 24.763 50.419 1 23.19 ? C2 BBA 1 T 1 
HETATM 23 C C3 BBA . . . C 3 43.72 25.879 50.26 1 24.76 ? C3 BBA 1 T 1 
HETATM 24 C C BBA . . . C 3 43.594 26.965 51.376 1 25.97 ? C BBA 1 T 1 
HETATM 25 C C4 BBA . . . C 3 43.997 26.403 52.776 1 25.8 ? C4 BBA 1 T 1 
HETATM 26 C C5 BBA . . . C 3 42.848 25.616 53.368 1 24.89 ? C5 BBA 1 T 1 
HETATM 27 C C6 BBA . . . C 3 42.707 24.187 52.923 1 23.46 ? C6 BBA 1 T 1 
HETATM 28 O O7 BBA . . . C 3 42.32 23.336 53.718 1 22.43 ? O7 BBA 1 T 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#