data_1V2N # _model_server_result.job_id 0kSphRqb-DuWlEZLWawizg _model_server_result.datetime_utc '2024-11-25 11:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1V2N # _exptl.entry_id 1V2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.495 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V2N _cell.length_a 55.24 _cell.length_b 55.24 _cell.length_c 111.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc5 B CA CA . T CA 480 1_555 D O HOH . T HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc6 B CA CA . T CA 480 1_555 D O HOH . T HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? # _chem_comp.formula 'C23 H28 N4 O' _chem_comp.formula_weight 376.495 _chem_comp.id BBA _chem_comp.mon_nstd_flag . _chem_comp.name 2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIS-BENZAMIDINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 BBA sing 70 n n C8 C1 BBA sing 71 n n C8 H81 BBA sing 72 n n C8 H82 BBA sing 73 n n C9 C14 BBA doub 74 n y C9 C10 BBA sing 75 n y C14 C13 BBA sing 76 n y C14 H14 BBA sing 77 n n C13 C12 BBA doub 78 n y C13 H13 BBA sing 79 n n C10 C11 BBA doub 80 n y C10 H10 BBA sing 81 n n C11 C12 BBA sing 82 n y C11 H11 BBA sing 83 n n C12 C15 BBA sing 84 n n C15 N16 BBA sing 85 n n C15 N17 BBA doub 86 n n N16 HG11 BBA sing 87 n n N16 HG12 BBA sing 88 n n N17 HG2 BBA sing 89 n n C18 C19 BBA sing 90 n n C18 C5 BBA sing 91 n n C18 H181 BBA sing 92 n n C18 H182 BBA sing 93 n n C19 C20 BBA doub 94 n y C19 C24 BBA sing 95 n y C20 C21 BBA sing 96 n y C20 H20 BBA sing 97 n n C21 C22 BBA doub 98 n y C21 H21 BBA sing 99 n n C24 C23 BBA doub 100 n y C24 H24 BBA sing 101 n n C23 C22 BBA sing 102 n y C23 H23 BBA sing 103 n n C22 C25 BBA sing 104 n n C25 N26 BBA sing 105 n n C25 N27 BBA doub 106 n n N26 HG31 BBA sing 107 n n N26 HG32 BBA sing 108 n n N27 HG4 BBA sing 109 n n C1 C2 BBA sing 110 n n C1 C6 BBA sing 111 n n C1 H1 BBA sing 112 n n C2 C3 BBA sing 113 n n C2 H21A BBA sing 114 n n C2 H22 BBA sing 115 n n C3 C BBA sing 116 n n C3 H31 BBA sing 117 n n C3 H32 BBA sing 118 n n C C4 BBA sing 119 n n C H1A BBA sing 120 n n C H2 BBA sing 121 n n C4 C5 BBA sing 122 n n C4 H41 BBA sing 123 n n C4 H42 BBA sing 124 n n C5 C6 BBA sing 125 n n C5 H5 BBA sing 126 n n C6 O7 BBA doub 127 n n # _atom_sites.entry_id 1V2N _atom_sites.fract_transf_matrix[1][1] 0.018103 _atom_sites.fract_transf_matrix[1][2] 0.010452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA T 1 480 480 CA CA . C 3 BBA T 1 1 1 BBA ST3 . D 4 HOH T 1 501 501 HOH TIP . D 4 HOH T 2 502 502 HOH TIP . D 4 HOH T 3 503 503 HOH TIP . D 4 HOH T 4 504 504 HOH TIP . D 4 HOH T 5 505 505 HOH TIP . D 4 HOH T 6 506 506 HOH TIP . D 4 HOH T 7 507 507 HOH TIP . D 4 HOH T 8 508 508 HOH TIP . D 4 HOH T 9 509 509 HOH TIP . D 4 HOH T 10 510 510 HOH TIP . D 4 HOH T 11 511 511 HOH TIP . D 4 HOH T 12 512 512 HOH TIP . D 4 HOH T 13 513 515 HOH TIP . D 4 HOH T 14 514 516 HOH TIP . D 4 HOH T 15 515 517 HOH TIP . D 4 HOH T 16 516 518 HOH TIP . D 4 HOH T 17 517 519 HOH TIP . D 4 HOH T 18 518 520 HOH TIP . D 4 HOH T 19 519 522 HOH TIP . D 4 HOH T 20 520 523 HOH TIP . D 4 HOH T 21 521 524 HOH TIP . D 4 HOH T 22 522 525 HOH TIP . D 4 HOH T 23 523 526 HOH TIP . D 4 HOH T 24 524 527 HOH TIP . D 4 HOH T 25 525 528 HOH TIP . D 4 HOH T 26 526 529 HOH TIP . D 4 HOH T 27 527 531 HOH TIP . D 4 HOH T 28 528 532 HOH TIP . D 4 HOH T 29 529 533 HOH TIP . D 4 HOH T 30 530 534 HOH TIP . D 4 HOH T 31 531 535 HOH TIP . D 4 HOH T 32 532 537 HOH TIP . D 4 HOH T 33 533 538 HOH TIP . D 4 HOH T 34 534 541 HOH TIP . D 4 HOH T 35 535 544 HOH TIP . D 4 HOH T 36 536 546 HOH TIP . D 4 HOH T 37 537 548 HOH TIP . D 4 HOH T 38 538 549 HOH TIP . D 4 HOH T 39 539 550 HOH TIP . D 4 HOH T 40 540 551 HOH TIP . D 4 HOH T 41 541 556 HOH TIP . D 4 HOH T 42 542 559 HOH TIP . D 4 HOH T 43 543 562 HOH TIP . D 4 HOH T 44 544 563 HOH TIP . D 4 HOH T 45 545 566 HOH TIP . D 4 HOH T 46 546 567 HOH TIP . D 4 HOH T 47 547 572 HOH TIP . D 4 HOH T 48 548 574 HOH TIP . D 4 HOH T 49 549 575 HOH TIP . D 4 HOH T 50 550 576 HOH TIP . D 4 HOH T 51 551 595 HOH TIP . D 4 HOH T 52 552 596 HOH TIP . D 4 HOH T 53 553 599 HOH TIP . D 4 HOH T 54 554 600 HOH TIP . D 4 HOH T 55 555 608 HOH TIP . D 4 HOH T 56 556 625 HOH TIP . D 4 HOH T 57 557 630 HOH TIP . D 4 HOH T 58 558 632 HOH TIP . D 4 HOH T 59 559 636 HOH TIP . D 4 HOH T 60 560 646 HOH TIP . D 4 HOH T 61 561 648 HOH TIP . D 4 HOH T 62 562 649 HOH TIP . D 4 HOH T 63 563 513 HOH TIP . D 4 HOH T 64 564 514 HOH TIP . D 4 HOH T 65 565 521 HOH TIP . D 4 HOH T 66 566 530 HOH TIP . D 4 HOH T 67 567 536 HOH TIP . D 4 HOH T 68 568 539 HOH TIP . D 4 HOH T 69 569 542 HOH TIP . D 4 HOH T 70 570 545 HOH TIP . D 4 HOH T 71 571 552 HOH TIP . D 4 HOH T 72 572 569 HOH TIP . D 4 HOH T 73 573 573 HOH TIP . D 4 HOH T 74 574 582 HOH TIP . D 4 HOH T 75 575 588 HOH TIP . D 4 HOH T 76 576 609 HOH TIP . D 4 HOH T 77 577 611 HOH TIP . D 4 HOH T 78 578 612 HOH TIP . D 4 HOH T 79 579 613 HOH TIP . D 4 HOH T 80 580 627 HOH TIP . D 4 HOH T 81 581 633 HOH TIP . D 4 HOH T 82 582 639 HOH TIP . D 4 HOH T 83 583 644 HOH TIP . D 4 HOH T 84 584 800 HOH TIP . D 4 HOH T 85 585 801 HOH TIP . D 4 HOH T 86 586 803 HOH TIP . D 4 HOH T 87 587 804 HOH TIP . D 4 HOH T 88 588 805 HOH TIP . D 4 HOH T 89 589 807 HOH TIP . D 4 HOH T 90 590 809 HOH TIP . D 4 HOH T 91 591 810 HOH TIP . D 4 HOH T 92 592 811 HOH TIP . D 4 HOH T 93 593 812 HOH TIP . D 4 HOH T 94 594 813 HOH TIP . D 4 HOH T 95 595 814 HOH TIP . D 4 HOH T 96 596 815 HOH TIP . D 4 HOH T 97 597 31 HOH TIP . D 4 HOH T 98 598 46 HOH TIP . D 4 HOH T 99 599 47 HOH TIP . D 4 HOH T 100 600 63 HOH TIP . D 4 HOH T 101 601 74 HOH TIP . D 4 HOH T 102 602 75 HOH TIP . D 4 HOH T 103 603 86 HOH TIP . D 4 HOH T 104 604 88 HOH TIP . D 4 HOH T 105 605 91 HOH TIP . D 4 HOH T 106 606 92 HOH TIP . D 4 HOH T 107 607 98 HOH TIP . D 4 HOH T 108 608 99 HOH TIP . D 4 HOH T 109 609 101 HOH TIP . D 4 HOH T 110 610 104 HOH TIP . D 4 HOH T 111 611 109 HOH TIP . D 4 HOH T 112 612 110 HOH TIP . D 4 HOH T 113 613 111 HOH TIP . D 4 HOH T 114 614 114 HOH TIP . D 4 HOH T 115 615 121 HOH TIP . D 4 HOH T 116 616 123 HOH TIP . D 4 HOH T 117 617 124 HOH TIP . D 4 HOH T 118 618 125 HOH TIP . D 4 HOH T 119 619 126 HOH TIP . D 4 HOH T 120 620 145 HOH TIP . D 4 HOH T 121 621 147 HOH TIP . D 4 HOH T 122 622 148 HOH TIP . D 4 HOH T 123 623 164 HOH TIP . D 4 HOH T 124 624 345 HOH TIP . D 4 HOH T 125 625 403 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BBA . . . C 3 43.606 22.617 51.103 1 21.81 ? C8 BBA 1 T 1 HETATM 2 C C9 BBA . . . C 3 44.148 21.479 51.97 1 21.12 ? C9 BBA 1 T 1 HETATM 3 C C14 BBA . . . C 3 44.963 21.729 53.122 1 19.48 ? C14 BBA 1 T 1 HETATM 4 C C13 BBA . . . C 3 45.437 20.662 53.912 1 19.44 ? C13 BBA 1 T 1 HETATM 5 C C10 BBA . . . C 3 43.852 20.133 51.606 1 19.71 ? C10 BBA 1 T 1 HETATM 6 C C11 BBA . . . C 3 44.333 19.057 52.403 1 18.45 ? C11 BBA 1 T 1 HETATM 7 C C12 BBA . . . C 3 45.14 19.32 53.549 1 19.36 ? C12 BBA 1 T 1 HETATM 8 C C15 BBA . . . C 3 45.657 18.19 54.407 1 18.26 ? C15 BBA 1 T 1 HETATM 9 N N16 BBA . . . C 3 45.128 16.934 54.296 1 15.48 ? N16 BBA 1 T 1 HETATM 10 N N17 BBA . . . C 3 46.663 18.422 55.309 1 16.25 ? N17 BBA 1 T 1 HETATM 11 C C18 BBA . . . C 3 42.113 26.248 54.323 1 25.38 ? C18 BBA 1 T 1 HETATM 12 C C19 BBA . . . C 3 40.873 25.744 55.05 1 25.87 ? C19 BBA 1 T 1 HETATM 13 C C20 BBA . . . C 3 40.89 25.61 56.469 1 27.74 ? C20 BBA 1 T 1 HETATM 14 C C21 BBA . . . C 3 39.727 25.147 57.158 1 28.94 ? C21 BBA 1 T 1 HETATM 15 C C24 BBA . . . C 3 39.69 25.408 54.332 1 26.36 ? C24 BBA 1 T 1 HETATM 16 C C23 BBA . . . C 3 38.535 24.948 55.013 1 26.43 ? C23 BBA 1 T 1 HETATM 17 C C22 BBA . . . C 3 38.542 24.814 56.425 1 29.22 ? C22 BBA 1 T 1 HETATM 18 C C25 BBA . . . C 3 37.294 24.324 57.137 1 30.44 ? C25 BBA 1 T 1 HETATM 19 N N26 BBA . . . C 3 36.508 23.358 56.562 1 32.35 ? N26 BBA 1 T 1 HETATM 20 N N27 BBA . . . C 3 36.932 24.848 58.348 1 32.86 ? N27 BBA 1 T 1 HETATM 21 C C1 BBA . . . C 3 43.056 23.797 51.51 1 22.52 ? C1 BBA 1 T 1 HETATM 22 C C2 BBA . . . C 3 42.645 24.763 50.419 1 23.19 ? C2 BBA 1 T 1 HETATM 23 C C3 BBA . . . C 3 43.72 25.879 50.26 1 24.76 ? C3 BBA 1 T 1 HETATM 24 C C BBA . . . C 3 43.594 26.965 51.376 1 25.97 ? C BBA 1 T 1 HETATM 25 C C4 BBA . . . C 3 43.997 26.403 52.776 1 25.8 ? C4 BBA 1 T 1 HETATM 26 C C5 BBA . . . C 3 42.848 25.616 53.368 1 24.89 ? C5 BBA 1 T 1 HETATM 27 C C6 BBA . . . C 3 42.707 24.187 52.923 1 23.46 ? C6 BBA 1 T 1 HETATM 28 O O7 BBA . . . C 3 42.32 23.336 53.718 1 22.43 ? O7 BBA 1 T 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #