data_1V2R # _model_server_result.job_id q6M55WKho3UatcbNiRHIUA _model_server_result.datetime_utc '2024-11-07 05:36:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 1V2R # _exptl.entry_id 1V2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.493 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL N-[(4-METHYLPHENYL)SULFONYL]GLYCYL-3-[AMINO(IMINO)METHYL]-D-PHENYLALANINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V2R _cell.length_a 55.1 _cell.length_b 57.78 _cell.length_c 67.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 C CA CA . T CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 C CA CA . T CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 C CA CA . T CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 C CA CA . T CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc5 C CA CA . T CA 601 1_555 E O HOH . T HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc6 C CA CA . T CA 601 1_555 E O HOH . T HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? # _chem_comp.formula 'C20 H24 N4 O5 S' _chem_comp.formula_weight 432.493 _chem_comp.id ANH _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL N-[(4-METHYLPHENYL)SULFONYL]GLYCYL-3-[AMINO(IMINO)METHYL]-D-PHENYLALANINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NALPHA-(2-NAPHTHYLSULFONYLGLYCYL)-3-AMIDINO-D,L-PHENYLALANINE-ISOPROPYLESTER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C13 ANH sing 13 n n N12 C11 ANH sing 14 n n N12 H12 ANH sing 15 n n C13 C30 ANH sing 16 n n C13 C14 ANH sing 17 n n C13 H13 ANH sing 18 n n C30 C21 ANH sing 19 n n C30 H301 ANH sing 20 n n C30 H302 ANH sing 21 n n C14 O17 ANH doub 22 n n C14 O15 ANH sing 23 n n O15 C16 ANH sing 24 n n C16 H161 ANH sing 25 n n C16 H162 ANH sing 26 n n C16 H163 ANH sing 27 n n C21 C22 ANH doub 28 n y C21 C26 ANH sing 29 n y C22 C23 ANH sing 30 n y C22 H22 ANH sing 31 n n C23 C24 ANH doub 32 n y C23 H23 ANH sing 33 n n C24 C25 ANH sing 34 n y C24 H24 ANH sing 35 n n C25 C26 ANH doub 36 n y C25 C27 ANH sing 37 n n C26 H26 ANH sing 38 n n C27 N28 ANH sing 39 n n C27 N29 ANH doub 40 n n N28 H281 ANH sing 41 n n N28 H282 ANH sing 42 n n N29 H29 ANH sing 43 n n C11 C10 ANH sing 44 n n C11 O20 ANH doub 45 n n C10 N9 ANH sing 46 n n C10 H101 ANH sing 47 n n C10 H102 ANH sing 48 n n N9 S8 ANH sing 49 n n N9 HN9 ANH sing 50 n n C1 C2 ANH sing 51 n n C1 H11 ANH sing 52 n n C1 H12A ANH sing 53 n n C1 H13A ANH sing 54 n n C2 C3 ANH sing 55 n y C2 C7 ANH doub 56 n y C3 C4 ANH doub 57 n y C3 H3 ANH sing 58 n n C4 C5 ANH sing 59 n y C4 H4 ANH sing 60 n n C5 C6 ANH doub 61 n y C5 S8 ANH sing 62 n n C6 C7 ANH sing 63 n y C6 H6 ANH sing 64 n n C7 H7 ANH sing 65 n n S8 O18 ANH doub 66 n n S8 O19 ANH doub 67 n n # _atom_sites.entry_id 1V2R _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 T 1 600 600 SO4 SO4 . C 3 CA T 1 601 601 CA CA . D 4 ANH T 1 800 800 ANH INH . E 5 HOH T 1 801 2 HOH TIP . E 5 HOH T 2 802 3 HOH TIP . E 5 HOH T 3 803 4 HOH TIP . E 5 HOH T 4 804 5 HOH TIP . E 5 HOH T 5 805 6 HOH TIP . E 5 HOH T 6 806 7 HOH TIP . E 5 HOH T 7 807 8 HOH TIP . E 5 HOH T 8 808 9 HOH TIP . E 5 HOH T 9 809 10 HOH TIP . E 5 HOH T 10 810 11 HOH TIP . E 5 HOH T 11 811 12 HOH TIP . E 5 HOH T 12 812 13 HOH TIP . E 5 HOH T 13 813 14 HOH TIP . E 5 HOH T 14 814 15 HOH TIP . E 5 HOH T 15 815 17 HOH TIP . E 5 HOH T 16 816 18 HOH TIP . E 5 HOH T 17 817 19 HOH TIP . E 5 HOH T 18 818 20 HOH TIP . E 5 HOH T 19 819 21 HOH TIP . E 5 HOH T 20 820 22 HOH TIP . E 5 HOH T 21 821 23 HOH TIP . E 5 HOH T 22 822 24 HOH TIP . E 5 HOH T 23 823 25 HOH TIP . E 5 HOH T 24 824 26 HOH TIP . E 5 HOH T 25 825 27 HOH TIP . E 5 HOH T 26 826 28 HOH TIP . E 5 HOH T 27 827 29 HOH TIP . E 5 HOH T 28 828 30 HOH TIP . E 5 HOH T 29 829 32 HOH TIP . E 5 HOH T 30 830 33 HOH TIP . E 5 HOH T 31 831 36 HOH TIP . E 5 HOH T 32 832 37 HOH TIP . E 5 HOH T 33 833 38 HOH TIP . E 5 HOH T 34 834 39 HOH TIP . E 5 HOH T 35 835 41 HOH TIP . E 5 HOH T 36 836 42 HOH TIP . E 5 HOH T 37 837 43 HOH TIP . E 5 HOH T 38 838 44 HOH TIP . E 5 HOH T 39 839 48 HOH TIP . E 5 HOH T 40 840 50 HOH TIP . E 5 HOH T 41 841 51 HOH TIP . E 5 HOH T 42 842 53 HOH TIP . E 5 HOH T 43 843 54 HOH TIP . E 5 HOH T 44 844 57 HOH TIP . E 5 HOH T 45 845 58 HOH TIP . E 5 HOH T 46 846 59 HOH TIP . E 5 HOH T 47 847 62 HOH TIP . E 5 HOH T 48 848 65 HOH TIP . E 5 HOH T 49 849 66 HOH TIP . E 5 HOH T 50 850 67 HOH TIP . E 5 HOH T 51 851 68 HOH TIP . E 5 HOH T 52 852 70 HOH TIP . E 5 HOH T 53 853 73 HOH TIP . E 5 HOH T 54 854 75 HOH TIP . E 5 HOH T 55 855 77 HOH TIP . E 5 HOH T 56 856 79 HOH TIP . E 5 HOH T 57 857 83 HOH TIP . E 5 HOH T 58 858 84 HOH TIP . E 5 HOH T 59 859 86 HOH TIP . E 5 HOH T 60 860 90 HOH TIP . E 5 HOH T 61 861 93 HOH TIP . E 5 HOH T 62 862 96 HOH TIP . E 5 HOH T 63 863 97 HOH TIP . E 5 HOH T 64 864 98 HOH TIP . E 5 HOH T 65 865 99 HOH TIP . E 5 HOH T 66 866 100 HOH TIP . E 5 HOH T 67 867 102 HOH TIP . E 5 HOH T 68 868 106 HOH TIP . E 5 HOH T 69 869 108 HOH TIP . E 5 HOH T 70 870 109 HOH TIP . E 5 HOH T 71 871 111 HOH TIP . E 5 HOH T 72 872 114 HOH TIP . E 5 HOH T 73 873 115 HOH TIP . E 5 HOH T 74 874 122 HOH TIP . E 5 HOH T 75 875 126 HOH TIP . E 5 HOH T 76 876 133 HOH TIP . E 5 HOH T 77 877 137 HOH TIP . E 5 HOH T 78 878 141 HOH TIP . E 5 HOH T 79 879 145 HOH TIP . E 5 HOH T 80 880 150 HOH TIP . E 5 HOH T 81 881 158 HOH TIP . E 5 HOH T 82 882 299 HOH TIP . E 5 HOH T 83 883 364 HOH TIP . E 5 HOH T 84 884 421 HOH TIP . E 5 HOH T 85 885 455 HOH TIP . E 5 HOH T 86 886 468 HOH TIP . E 5 HOH T 87 887 475 HOH TIP . E 5 HOH T 88 888 489 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 ANH . . . D 4 -2.259 17.794 16.829 1 25.71 ? N12 ANH 800 T 1 HETATM 2 C C13 ANH . . . D 4 -3.522 17.18 17.367 1 25.55 ? C13 ANH 800 T 1 HETATM 3 C C30 ANH . . . D 4 -3.167 16.254 18.535 1 22.53 ? C30 ANH 800 T 1 HETATM 4 C C14 ANH . . . D 4 -4.695 18.18 17.819 1 26.74 ? C14 ANH 800 T 1 HETATM 5 O O17 ANH . . . D 4 -5.844 17.985 17.354 1 29.01 ? O17 ANH 800 T 1 HETATM 6 O O15 ANH . . . D 4 -4.406 19.258 18.727 1 28.21 ? O15 ANH 800 T 1 HETATM 7 C C16 ANH . . . D 4 -3.096 19.577 19.333 1 31.36 ? C16 ANH 800 T 1 HETATM 8 C C21 ANH . . . D 4 -2.396 14.984 18.187 1 23.37 ? C21 ANH 800 T 1 HETATM 9 C C22 ANH . . . D 4 -1.375 14.549 19.066 1 21.86 ? C22 ANH 800 T 1 HETATM 10 C C23 ANH . . . D 4 -0.624 13.373 18.79 1 23.41 ? C23 ANH 800 T 1 HETATM 11 C C24 ANH . . . D 4 -0.9 12.621 17.618 1 22.3 ? C24 ANH 800 T 1 HETATM 12 C C25 ANH . . . D 4 -1.94 13.013 16.666 1 22.08 ? C25 ANH 800 T 1 HETATM 13 C C26 ANH . . . D 4 -2.684 14.222 16.988 1 21.11 ? C26 ANH 800 T 1 HETATM 14 C C27 ANH . . . D 4 -2.194 12.245 15.51 1 22.56 ? C27 ANH 800 T 1 HETATM 15 N N28 ANH . . . D 4 -2.802 12.683 14.424 1 21.85 ? N28 ANH 800 T 1 HETATM 16 N N29 ANH . . . D 4 -1.855 10.967 15.366 1 20 ? N29 ANH 800 T 1 HETATM 17 C C11 ANH . . . D 4 -2.209 18.644 15.789 1 27.4 ? C11 ANH 800 T 1 HETATM 18 C C10 ANH . . . D 4 -0.89 19.342 15.482 1 28.41 ? C10 ANH 800 T 1 HETATM 19 N N9 ANH . . . D 4 -0.817 19.734 14.054 1 30.44 ? N9 ANH 800 T 1 HETATM 20 O O20 ANH . . . D 4 -3.175 18.867 15.058 1 26.47 ? O20 ANH 800 T 1 HETATM 21 C C1 ANH . . . D 4 3.527 24.133 16.891 1 34.6 ? C1 ANH 800 T 1 HETATM 22 C C2 ANH . . . D 4 2.55 23.406 16.05 1 31.73 ? C2 ANH 800 T 1 HETATM 23 C C3 ANH . . . D 4 2.956 22.474 15.033 1 33.07 ? C3 ANH 800 T 1 HETATM 24 C C4 ANH . . . D 4 1.954 21.803 14.25 1 31.24 ? C4 ANH 800 T 1 HETATM 25 C C5 ANH . . . D 4 0.571 22.106 14.52 1 30.13 ? C5 ANH 800 T 1 HETATM 26 C C6 ANH . . . D 4 0.187 23.027 15.526 1 31.01 ? C6 ANH 800 T 1 HETATM 27 C C7 ANH . . . D 4 1.176 23.666 16.278 1 32.37 ? C7 ANH 800 T 1 HETATM 28 S S8 ANH . . . D 4 -0.707 21.355 13.628 1 28.29 ? S8 ANH 800 T 1 HETATM 29 O O18 ANH . . . D 4 -0.457 21.394 12.059 1 30.1 ? O18 ANH 800 T 1 HETATM 30 O O19 ANH . . . D 4 -2.079 21.912 14.143 1 27.79 ? O19 ANH 800 T 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #