data_1V2U
#
_model_server_result.job_id            h4jJ2YuIGYg8pmNEtJetWA 
_model_server_result.datetime_utc      '2024-11-07 05:55:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    1V2U 
#
_exptl.entry_id    1V2U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V2U 
_cell.length_a            54.55 
_cell.length_b            54.55 
_cell.length_c            136.8 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc2 A O ASN 54 T ASN 72 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc3 A O VAL 57 T VAL 75 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 D CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc5 D CA CA . T CA 480 1_555 F O HOH . T HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc6 D CA CA . T CA 480 1_555 F O HOH . T HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1V2U 
_atom_sites.fract_transf_matrix[1][1]    0.018332 
_atom_sites.fract_transf_matrix[1][2]    0.010584 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 T 1 600 600 SO4 SO4 . 
C 2 SO4 T 1 601 601 SO4 SO4 . 
D 3 CA T 1 480 480 CA CA . 
E 4 BEN T 1 1 1 BEN BEN . 
F 5 HOH T 1 602 2 HOH TIP . 
F 5 HOH T 2 603 3 HOH TIP . 
F 5 HOH T 3 604 4 HOH TIP . 
F 5 HOH T 4 605 5 HOH TIP . 
F 5 HOH T 5 606 6 HOH TIP . 
F 5 HOH T 6 607 7 HOH TIP . 
F 5 HOH T 7 608 8 HOH TIP . 
F 5 HOH T 8 609 9 HOH TIP . 
F 5 HOH T 9 610 10 HOH TIP . 
F 5 HOH T 10 611 11 HOH TIP . 
F 5 HOH T 11 612 12 HOH TIP . 
F 5 HOH T 12 613 13 HOH TIP . 
F 5 HOH T 13 614 14 HOH TIP . 
F 5 HOH T 14 615 15 HOH TIP . 
F 5 HOH T 15 616 17 HOH TIP . 
F 5 HOH T 16 617 18 HOH TIP . 
F 5 HOH T 17 618 19 HOH TIP . 
F 5 HOH T 18 619 20 HOH TIP . 
F 5 HOH T 19 620 21 HOH TIP . 
F 5 HOH T 20 621 22 HOH TIP . 
F 5 HOH T 21 622 23 HOH TIP . 
F 5 HOH T 22 623 24 HOH TIP . 
F 5 HOH T 23 624 25 HOH TIP . 
F 5 HOH T 24 625 26 HOH TIP . 
F 5 HOH T 25 626 27 HOH TIP . 
F 5 HOH T 26 627 28 HOH TIP . 
F 5 HOH T 27 628 29 HOH TIP . 
F 5 HOH T 28 629 30 HOH TIP . 
F 5 HOH T 29 630 31 HOH TIP . 
F 5 HOH T 30 631 32 HOH TIP . 
F 5 HOH T 31 632 33 HOH TIP . 
F 5 HOH T 32 633 34 HOH TIP . 
F 5 HOH T 33 634 37 HOH TIP . 
F 5 HOH T 34 635 38 HOH TIP . 
F 5 HOH T 35 636 39 HOH TIP . 
F 5 HOH T 36 637 41 HOH TIP . 
F 5 HOH T 37 638 42 HOH TIP . 
F 5 HOH T 38 639 43 HOH TIP . 
F 5 HOH T 39 640 44 HOH TIP . 
F 5 HOH T 40 641 47 HOH TIP . 
F 5 HOH T 41 642 48 HOH TIP . 
F 5 HOH T 42 643 50 HOH TIP . 
F 5 HOH T 43 644 51 HOH TIP . 
F 5 HOH T 44 645 52 HOH TIP . 
F 5 HOH T 45 646 55 HOH TIP . 
F 5 HOH T 46 647 58 HOH TIP . 
F 5 HOH T 47 648 59 HOH TIP . 
F 5 HOH T 48 649 61 HOH TIP . 
F 5 HOH T 49 650 62 HOH TIP . 
F 5 HOH T 50 651 63 HOH TIP . 
F 5 HOH T 51 652 64 HOH TIP . 
F 5 HOH T 52 653 66 HOH TIP . 
F 5 HOH T 53 654 67 HOH TIP . 
F 5 HOH T 54 655 68 HOH TIP . 
F 5 HOH T 55 656 72 HOH TIP . 
F 5 HOH T 56 657 73 HOH TIP . 
F 5 HOH T 57 658 75 HOH TIP . 
F 5 HOH T 58 659 78 HOH TIP . 
F 5 HOH T 59 660 79 HOH TIP . 
F 5 HOH T 60 661 80 HOH TIP . 
F 5 HOH T 61 662 82 HOH TIP . 
F 5 HOH T 62 663 89 HOH TIP . 
F 5 HOH T 63 664 90 HOH TIP . 
F 5 HOH T 64 665 94 HOH TIP . 
F 5 HOH T 65 666 95 HOH TIP . 
F 5 HOH T 66 667 96 HOH TIP . 
F 5 HOH T 67 668 97 HOH TIP . 
F 5 HOH T 68 669 100 HOH TIP . 
F 5 HOH T 69 670 102 HOH TIP . 
F 5 HOH T 70 671 108 HOH TIP . 
F 5 HOH T 71 672 109 HOH TIP . 
F 5 HOH T 72 673 110 HOH TIP . 
F 5 HOH T 73 674 115 HOH TIP . 
F 5 HOH T 74 675 116 HOH TIP . 
F 5 HOH T 75 676 126 HOH TIP . 
F 5 HOH T 76 677 134 HOH TIP . 
F 5 HOH T 77 678 137 HOH TIP . 
F 5 HOH T 78 679 138 HOH TIP . 
F 5 HOH T 79 680 299 HOH TIP . 
F 5 HOH T 80 681 338 HOH TIP . 
F 5 HOH T 81 682 393 HOH TIP . 
F 5 HOH T 82 683 449 HOH TIP . 
F 5 HOH T 83 684 450 HOH TIP . 
F 5 HOH T 84 685 451 HOH TIP . 
F 5 HOH T 85 686 452 HOH TIP . 
F 5 HOH T 86 687 453 HOH TIP . 
F 5 HOH T 87 688 454 HOH TIP . 
F 5 HOH T 88 689 455 HOH TIP . 
F 5 HOH T 89 690 456 HOH TIP . 
F 5 HOH T 90 691 457 HOH TIP . 
F 5 HOH T 91 692 458 HOH TIP . 
F 5 HOH T 92 693 459 HOH TIP . 
F 5 HOH T 93 694 460 HOH TIP . 
F 5 HOH T 94 695 461 HOH TIP . 
F 5 HOH T 95 696 462 HOH TIP . 
F 5 HOH T 96 697 463 HOH TIP . 
F 5 HOH T 97 698 464 HOH TIP . 
F 5 HOH T 98 699 465 HOH TIP . 
F 5 HOH T 99 700 466 HOH TIP . 
F 5 HOH T 100 701 467 HOH TIP . 
F 5 HOH T 101 702 468 HOH TIP . 
F 5 HOH T 102 703 469 HOH TIP . 
F 5 HOH T 103 704 470 HOH TIP . 
F 5 HOH T 104 705 471 HOH TIP . 
F 5 HOH T 105 706 472 HOH TIP . 
F 5 HOH T 106 707 473 HOH TIP . 
F 5 HOH T 107 708 474 HOH TIP . 
F 5 HOH T 108 709 475 HOH TIP . 
F 5 HOH T 109 710 476 HOH TIP . 
F 5 HOH T 110 711 477 HOH TIP . 
F 5 HOH T 111 712 478 HOH TIP . 
F 5 HOH T 112 713 479 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . E 4 53.362 66.934 -28.854 1 18.89 ? C1 BEN 1 T 1 
HETATM 2 C C2 BEN . . . E 4 52.739 66.559 -30.132 1 19.53 ? C2 BEN 1 T 1 
HETATM 3 C C3 BEN . . . E 4 52.456 67.568 -31.146 1 18.07 ? C3 BEN 1 T 1 
HETATM 4 C C4 BEN . . . E 4 52.791 68.96 -30.896 1 19.9 ? C4 BEN 1 T 1 
HETATM 5 C C5 BEN . . . E 4 53.406 69.347 -29.643 1 20.5 ? C5 BEN 1 T 1 
HETATM 6 C C6 BEN . . . E 4 53.692 68.342 -28.625 1 19.25 ? C6 BEN 1 T 1 
HETATM 7 C C BEN . . . E 4 53.666 65.868 -27.78 1 17.9 ? C BEN 1 T 1 
HETATM 8 N N1 BEN . . . E 4 54.397 66.184 -26.727 1 17.68 ? N1 BEN 1 T 1 
HETATM 9 N N2 BEN . . . E 4 53.201 64.642 -27.927 1 16.42 ? N2 BEN 1 T 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#