data_1V2W # _model_server_result.job_id nyJOnctYg3kmlCBQfYwqPA _model_server_result.datetime_utc '2024-11-25 11:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 1V2W # _exptl.entry_id 1V2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.493 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL N-[(4-METHYLPHENYL)SULFONYL]GLYCYL-3-[AMINO(IMINO)METHYL]-D-PHENYLALANINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V2W _cell.length_a 55.01 _cell.length_b 58.21 _cell.length_c 68.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A OE2 GLU 62 T GLU 80 1_555 C CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 C CA CA . T CA 480 1_555 E O HOH . T HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 C CA CA . T CA 480 1_555 E O HOH . T HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C20 H24 N4 O5 S' _chem_comp.formula_weight 432.493 _chem_comp.id ANH _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL N-[(4-METHYLPHENYL)SULFONYL]GLYCYL-3-[AMINO(IMINO)METHYL]-D-PHENYLALANINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NALPHA-(2-NAPHTHYLSULFONYLGLYCYL)-3-AMIDINO-D,L-PHENYLALANINE-ISOPROPYLESTER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C13 ANH sing 13 n n N12 C11 ANH sing 14 n n N12 H12 ANH sing 15 n n C13 C30 ANH sing 16 n n C13 C14 ANH sing 17 n n C13 H13 ANH sing 18 n n C30 C21 ANH sing 19 n n C30 H301 ANH sing 20 n n C30 H302 ANH sing 21 n n C14 O17 ANH doub 22 n n C14 O15 ANH sing 23 n n O15 C16 ANH sing 24 n n C16 H161 ANH sing 25 n n C16 H162 ANH sing 26 n n C16 H163 ANH sing 27 n n C21 C22 ANH doub 28 n y C21 C26 ANH sing 29 n y C22 C23 ANH sing 30 n y C22 H22 ANH sing 31 n n C23 C24 ANH doub 32 n y C23 H23 ANH sing 33 n n C24 C25 ANH sing 34 n y C24 H24 ANH sing 35 n n C25 C26 ANH doub 36 n y C25 C27 ANH sing 37 n n C26 H26 ANH sing 38 n n C27 N28 ANH sing 39 n n C27 N29 ANH doub 40 n n N28 H281 ANH sing 41 n n N28 H282 ANH sing 42 n n N29 H29 ANH sing 43 n n C11 C10 ANH sing 44 n n C11 O20 ANH doub 45 n n C10 N9 ANH sing 46 n n C10 H101 ANH sing 47 n n C10 H102 ANH sing 48 n n N9 S8 ANH sing 49 n n N9 HN9 ANH sing 50 n n C1 C2 ANH sing 51 n n C1 H11 ANH sing 52 n n C1 H12A ANH sing 53 n n C1 H13A ANH sing 54 n n C2 C3 ANH sing 55 n y C2 C7 ANH doub 56 n y C3 C4 ANH doub 57 n y C3 H3 ANH sing 58 n n C4 C5 ANH sing 59 n y C4 H4 ANH sing 60 n n C5 C6 ANH doub 61 n y C5 S8 ANH sing 62 n n C6 C7 ANH sing 63 n y C6 H6 ANH sing 64 n n C7 H7 ANH sing 65 n n S8 O18 ANH doub 66 n n S8 O19 ANH doub 67 n n # _atom_sites.entry_id 1V2W _atom_sites.fract_transf_matrix[1][1] 0.018179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 T 1 600 600 SO4 SO4 . C 3 CA T 1 480 480 CA CA . D 4 ANH T 1 800 800 ANH INH . E 5 HOH T 1 801 2 HOH TIP . E 5 HOH T 2 802 3 HOH TIP . E 5 HOH T 3 803 4 HOH TIP . E 5 HOH T 4 804 5 HOH TIP . E 5 HOH T 5 805 6 HOH TIP . E 5 HOH T 6 806 7 HOH TIP . E 5 HOH T 7 807 8 HOH TIP . E 5 HOH T 8 808 9 HOH TIP . E 5 HOH T 9 809 10 HOH TIP . E 5 HOH T 10 810 11 HOH TIP . E 5 HOH T 11 811 12 HOH TIP . E 5 HOH T 12 812 13 HOH TIP . E 5 HOH T 13 813 14 HOH TIP . E 5 HOH T 14 814 15 HOH TIP . E 5 HOH T 15 815 17 HOH TIP . E 5 HOH T 16 816 18 HOH TIP . E 5 HOH T 17 817 19 HOH TIP . E 5 HOH T 18 818 20 HOH TIP . E 5 HOH T 19 819 21 HOH TIP . E 5 HOH T 20 820 22 HOH TIP . E 5 HOH T 21 821 23 HOH TIP . E 5 HOH T 22 822 24 HOH TIP . E 5 HOH T 23 823 25 HOH TIP . E 5 HOH T 24 824 26 HOH TIP . E 5 HOH T 25 825 27 HOH TIP . E 5 HOH T 26 826 28 HOH TIP . E 5 HOH T 27 827 29 HOH TIP . E 5 HOH T 28 828 30 HOH TIP . E 5 HOH T 29 829 31 HOH TIP . E 5 HOH T 30 830 32 HOH TIP . E 5 HOH T 31 831 33 HOH TIP . E 5 HOH T 32 832 34 HOH TIP . E 5 HOH T 33 833 36 HOH TIP . E 5 HOH T 34 834 37 HOH TIP . E 5 HOH T 35 835 38 HOH TIP . E 5 HOH T 36 836 39 HOH TIP . E 5 HOH T 37 837 40 HOH TIP . E 5 HOH T 38 838 41 HOH TIP . E 5 HOH T 39 839 42 HOH TIP . E 5 HOH T 40 840 43 HOH TIP . E 5 HOH T 41 841 44 HOH TIP . E 5 HOH T 42 842 46 HOH TIP . E 5 HOH T 43 843 48 HOH TIP . E 5 HOH T 44 844 50 HOH TIP . E 5 HOH T 45 845 51 HOH TIP . E 5 HOH T 46 846 52 HOH TIP . E 5 HOH T 47 847 53 HOH TIP . E 5 HOH T 48 848 54 HOH TIP . E 5 HOH T 49 849 57 HOH TIP . E 5 HOH T 50 850 58 HOH TIP . E 5 HOH T 51 851 59 HOH TIP . E 5 HOH T 52 852 61 HOH TIP . E 5 HOH T 53 853 62 HOH TIP . E 5 HOH T 54 854 64 HOH TIP . E 5 HOH T 55 855 65 HOH TIP . E 5 HOH T 56 856 66 HOH TIP . E 5 HOH T 57 857 69 HOH TIP . E 5 HOH T 58 858 70 HOH TIP . E 5 HOH T 59 859 71 HOH TIP . E 5 HOH T 60 860 72 HOH TIP . E 5 HOH T 61 861 73 HOH TIP . E 5 HOH T 62 862 77 HOH TIP . E 5 HOH T 63 863 78 HOH TIP . E 5 HOH T 64 864 79 HOH TIP . E 5 HOH T 65 865 82 HOH TIP . E 5 HOH T 66 866 84 HOH TIP . E 5 HOH T 67 867 86 HOH TIP . E 5 HOH T 68 868 88 HOH TIP . E 5 HOH T 69 869 90 HOH TIP . E 5 HOH T 70 870 93 HOH TIP . E 5 HOH T 71 871 94 HOH TIP . E 5 HOH T 72 872 96 HOH TIP . E 5 HOH T 73 873 99 HOH TIP . E 5 HOH T 74 874 101 HOH TIP . E 5 HOH T 75 875 102 HOH TIP . E 5 HOH T 76 876 108 HOH TIP . E 5 HOH T 77 877 109 HOH TIP . E 5 HOH T 78 878 111 HOH TIP . E 5 HOH T 79 879 114 HOH TIP . E 5 HOH T 80 880 115 HOH TIP . E 5 HOH T 81 881 120 HOH TIP . E 5 HOH T 82 882 122 HOH TIP . E 5 HOH T 83 883 124 HOH TIP . E 5 HOH T 84 884 125 HOH TIP . E 5 HOH T 85 885 145 HOH TIP . E 5 HOH T 86 886 148 HOH TIP . E 5 HOH T 87 887 158 HOH TIP . E 5 HOH T 88 888 299 HOH TIP . E 5 HOH T 89 889 338 HOH TIP . E 5 HOH T 90 890 345 HOH TIP . E 5 HOH T 91 891 364 HOH TIP . E 5 HOH T 92 892 777 HOH TIP . E 5 HOH T 93 893 888 HOH TIP . E 5 HOH T 94 894 999 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 ANH . . . D 4 -2.23 19.06 17.582 1 33.76 ? N12 ANH 800 T 1 HETATM 2 C C13 ANH . . . D 4 -3.407 18.379 18.194 1 32.47 ? C13 ANH 800 T 1 HETATM 3 C C30 ANH . . . D 4 -2.903 17.395 19.254 1 28.97 ? C30 ANH 800 T 1 HETATM 4 C C14 ANH . . . D 4 -4.528 19.329 18.838 1 34.52 ? C14 ANH 800 T 1 HETATM 5 O O17 ANH . . . D 4 -5.726 19.135 18.512 1 35.22 ? O17 ANH 800 T 1 HETATM 6 O O15 ANH . . . D 4 -4.132 20.37 19.761 1 37.82 ? O15 ANH 800 T 1 HETATM 7 C C16 ANH . . . D 4 -2.757 20.68 20.208 1 37.66 ? C16 ANH 800 T 1 HETATM 8 C C21 ANH . . . D 4 -2.128 16.171 18.772 1 25.45 ? C21 ANH 800 T 1 HETATM 9 C C22 ANH . . . D 4 -1.076 15.675 19.583 1 23.76 ? C22 ANH 800 T 1 HETATM 10 C C23 ANH . . . D 4 -0.32 14.539 19.189 1 23.72 ? C23 ANH 800 T 1 HETATM 11 C C24 ANH . . . D 4 -0.62 13.886 17.965 1 21.89 ? C24 ANH 800 T 1 HETATM 12 C C25 ANH . . . D 4 -1.694 14.348 17.08 1 21.55 ? C25 ANH 800 T 1 HETATM 13 C C26 ANH . . . D 4 -2.44 15.512 17.522 1 21.77 ? C26 ANH 800 T 1 HETATM 14 C C27 ANH . . . D 4 -1.975 13.684 15.874 1 19.78 ? C27 ANH 800 T 1 HETATM 15 N N28 ANH . . . D 4 -2.657 14.191 14.87 1 20.92 ? N28 ANH 800 T 1 HETATM 16 N N29 ANH . . . D 4 -1.594 12.444 15.596 1 19.42 ? N29 ANH 800 T 1 HETATM 17 C C11 ANH . . . D 4 -2.288 19.977 16.606 1 36.36 ? C11 ANH 800 T 1 HETATM 18 C C10 ANH . . . D 4 -1.003 20.714 16.276 1 38.5 ? C10 ANH 800 T 1 HETATM 19 N N9 ANH . . . D 4 -0.932 21.256 14.892 1 42.67 ? N9 ANH 800 T 1 HETATM 20 O O20 ANH . . . D 4 -3.311 20.234 15.977 1 35.4 ? O20 ANH 800 T 1 HETATM 21 C C1 ANH . . . D 4 2.943 25.426 18.636 1 44.05 ? C1 ANH 800 T 1 HETATM 22 C C2 ANH . . . D 4 2.066 24.786 17.62 1 43.01 ? C2 ANH 800 T 1 HETATM 23 C C3 ANH . . . D 4 2.596 23.982 16.551 1 43.12 ? C3 ANH 800 T 1 HETATM 24 C C4 ANH . . . D 4 1.701 23.383 15.596 1 43.07 ? C4 ANH 800 T 1 HETATM 25 C C5 ANH . . . D 4 0.284 23.619 15.751 1 43.35 ? C5 ANH 800 T 1 HETATM 26 C C6 ANH . . . D 4 -0.227 24.419 16.813 1 42.74 ? C6 ANH 800 T 1 HETATM 27 C C7 ANH . . . D 4 0.663 24.993 17.736 1 43.48 ? C7 ANH 800 T 1 HETATM 28 S S8 ANH . . . D 4 -0.886 22.93 14.656 1 43.19 ? S8 ANH 800 T 1 HETATM 29 O O18 ANH . . . D 4 -0.554 23.153 13.109 1 43.8 ? O18 ANH 800 T 1 HETATM 30 O O19 ANH . . . D 4 -2.325 23.378 15.1 1 43.18 ? O19 ANH 800 T 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #