data_1V2X
#
_model_server_result.job_id            FtOsbp4IQfA7GF8Rt3NbfQ 
_model_server_result.datetime_utc      '2024-11-14 16:55:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1V2X 
#
_exptl.entry_id    1V2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.78 
_cell.angle_gamma         90 
_cell.entry_id            1V2X 
_cell.length_a            77.601 
_cell.length_b            44.023 
_cell.length_c            56.756 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 281 n n 
N HN1 SAM sing 282 n n 
N HN2 SAM sing 283 n n 
CA C SAM sing 284 n n 
CA CB SAM sing 285 n n 
CA HA SAM sing 286 n n 
C O SAM doub 287 n n 
C OXT SAM sing 288 n n 
CB CG SAM sing 289 n n 
CB HB1 SAM sing 290 n n 
CB HB2 SAM sing 291 n n 
CG SD SAM sing 292 n n 
CG HG1 SAM sing 293 n n 
CG HG2 SAM sing 294 n n 
SD CE SAM sing 295 n n 
SD C5' SAM sing 296 n n 
CE HE1 SAM sing 297 n n 
CE HE2 SAM sing 298 n n 
CE HE3 SAM sing 299 n n 
C5' C4' SAM sing 300 n n 
C5' "H5'1" SAM sing 301 n n 
C5' "H5'2" SAM sing 302 n n 
C4' O4' SAM sing 303 n n 
C4' C3' SAM sing 304 n n 
C4' H4' SAM sing 305 n n 
O4' C1' SAM sing 306 n n 
C3' O3' SAM sing 307 n n 
C3' C2' SAM sing 308 n n 
C3' H3' SAM sing 309 n n 
O3' HO3' SAM sing 310 n n 
C2' O2' SAM sing 311 n n 
C2' C1' SAM sing 312 n n 
C2' H2' SAM sing 313 n n 
O2' HO2' SAM sing 314 n n 
C1' N9 SAM sing 315 n n 
C1' H1' SAM sing 316 n n 
N9 C8 SAM sing 317 n y 
N9 C4 SAM sing 318 n y 
C8 N7 SAM doub 319 n y 
C8 H8 SAM sing 320 n n 
N7 C5 SAM sing 321 n y 
C5 C6 SAM sing 322 n y 
C5 C4 SAM doub 323 n y 
C6 N6 SAM sing 324 n n 
C6 N1 SAM doub 325 n y 
N6 HN61 SAM sing 326 n n 
N6 HN62 SAM sing 327 n n 
N1 C2 SAM sing 328 n y 
C2 N3 SAM doub 329 n y 
C2 H2 SAM sing 330 n n 
N3 C4 SAM sing 331 n y 
#
_atom_sites.entry_id                     1V2X 
_atom_sites.fract_transf_matrix[1][1]    0.012886 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007675 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 201 201 PO4 PO4 . 
C 2 PO4 A 1 202 202 PO4 PO4 . 
D 3 SAM A 1 400 400 SAM SAM . 
E 4 HOH A 1 401 1 HOH TIP . 
E 4 HOH A 2 402 2 HOH TIP . 
E 4 HOH A 3 403 3 HOH TIP . 
E 4 HOH A 4 404 4 HOH TIP . 
E 4 HOH A 5 405 5 HOH TIP . 
E 4 HOH A 6 406 6 HOH TIP . 
E 4 HOH A 7 407 7 HOH TIP . 
E 4 HOH A 8 408 8 HOH TIP . 
E 4 HOH A 9 409 9 HOH TIP . 
E 4 HOH A 10 410 10 HOH TIP . 
E 4 HOH A 11 411 11 HOH TIP . 
E 4 HOH A 12 412 12 HOH TIP . 
E 4 HOH A 13 413 13 HOH TIP . 
E 4 HOH A 14 414 14 HOH TIP . 
E 4 HOH A 15 415 15 HOH TIP . 
E 4 HOH A 16 416 16 HOH TIP . 
E 4 HOH A 17 417 17 HOH TIP . 
E 4 HOH A 18 418 18 HOH TIP . 
E 4 HOH A 19 419 19 HOH TIP . 
E 4 HOH A 20 420 20 HOH TIP . 
E 4 HOH A 21 421 21 HOH TIP . 
E 4 HOH A 22 422 22 HOH TIP . 
E 4 HOH A 23 423 23 HOH TIP . 
E 4 HOH A 24 424 24 HOH TIP . 
E 4 HOH A 25 425 25 HOH TIP . 
E 4 HOH A 26 426 26 HOH TIP . 
E 4 HOH A 27 427 27 HOH TIP . 
E 4 HOH A 28 428 28 HOH TIP . 
E 4 HOH A 29 429 29 HOH TIP . 
E 4 HOH A 30 430 30 HOH TIP . 
E 4 HOH A 31 431 31 HOH TIP . 
E 4 HOH A 32 432 32 HOH TIP . 
E 4 HOH A 33 433 33 HOH TIP . 
E 4 HOH A 34 434 34 HOH TIP . 
E 4 HOH A 35 435 35 HOH TIP . 
E 4 HOH A 36 436 36 HOH TIP . 
E 4 HOH A 37 437 37 HOH TIP . 
E 4 HOH A 38 438 38 HOH TIP . 
E 4 HOH A 39 439 39 HOH TIP . 
E 4 HOH A 40 440 40 HOH TIP . 
E 4 HOH A 41 441 41 HOH TIP . 
E 4 HOH A 42 442 42 HOH TIP . 
E 4 HOH A 43 443 43 HOH TIP . 
E 4 HOH A 44 444 44 HOH TIP . 
E 4 HOH A 45 445 45 HOH TIP . 
E 4 HOH A 46 446 46 HOH TIP . 
E 4 HOH A 47 447 47 HOH TIP . 
E 4 HOH A 48 448 48 HOH TIP . 
E 4 HOH A 49 449 49 HOH TIP . 
E 4 HOH A 50 450 50 HOH TIP . 
E 4 HOH A 51 451 51 HOH TIP . 
E 4 HOH A 52 452 52 HOH TIP . 
E 4 HOH A 53 453 53 HOH TIP . 
E 4 HOH A 54 454 54 HOH TIP . 
E 4 HOH A 55 455 55 HOH TIP . 
E 4 HOH A 56 456 56 HOH TIP . 
E 4 HOH A 57 457 57 HOH TIP . 
E 4 HOH A 58 458 58 HOH TIP . 
E 4 HOH A 59 459 59 HOH TIP . 
E 4 HOH A 60 460 60 HOH TIP . 
E 4 HOH A 61 461 61 HOH TIP . 
E 4 HOH A 62 462 62 HOH TIP . 
E 4 HOH A 63 463 63 HOH TIP . 
E 4 HOH A 64 464 64 HOH TIP . 
E 4 HOH A 65 465 65 HOH TIP . 
E 4 HOH A 66 466 66 HOH TIP . 
E 4 HOH A 67 467 67 HOH TIP . 
E 4 HOH A 68 468 68 HOH TIP . 
E 4 HOH A 69 469 69 HOH TIP . 
E 4 HOH A 70 470 70 HOH TIP . 
E 4 HOH A 71 471 71 HOH TIP . 
E 4 HOH A 72 472 72 HOH TIP . 
E 4 HOH A 73 473 73 HOH TIP . 
E 4 HOH A 74 474 74 HOH TIP . 
E 4 HOH A 75 475 75 HOH TIP . 
E 4 HOH A 76 476 76 HOH TIP . 
E 4 HOH A 77 477 77 HOH TIP . 
E 4 HOH A 78 478 78 HOH TIP . 
E 4 HOH A 79 479 79 HOH TIP . 
E 4 HOH A 80 480 80 HOH TIP . 
E 4 HOH A 81 481 81 HOH TIP . 
E 4 HOH A 82 482 82 HOH TIP . 
E 4 HOH A 83 483 83 HOH TIP . 
E 4 HOH A 84 484 84 HOH TIP . 
E 4 HOH A 85 485 85 HOH TIP . 
E 4 HOH A 86 486 86 HOH TIP . 
E 4 HOH A 87 487 87 HOH TIP . 
E 4 HOH A 88 488 88 HOH TIP . 
E 4 HOH A 89 489 89 HOH TIP . 
E 4 HOH A 90 490 90 HOH TIP . 
E 4 HOH A 91 491 91 HOH TIP . 
E 4 HOH A 92 492 92 HOH TIP . 
E 4 HOH A 93 493 93 HOH TIP . 
E 4 HOH A 94 494 94 HOH TIP . 
E 4 HOH A 95 495 95 HOH TIP . 
E 4 HOH A 96 496 96 HOH TIP . 
E 4 HOH A 97 497 97 HOH TIP . 
E 4 HOH A 98 498 98 HOH TIP . 
E 4 HOH A 99 499 99 HOH TIP . 
E 4 HOH A 100 500 100 HOH TIP . 
E 4 HOH A 101 501 101 HOH TIP . 
E 4 HOH A 102 502 102 HOH TIP . 
E 4 HOH A 103 503 103 HOH TIP . 
E 4 HOH A 104 504 104 HOH TIP . 
E 4 HOH A 105 505 105 HOH TIP . 
E 4 HOH A 106 506 106 HOH TIP . 
E 4 HOH A 107 507 107 HOH TIP . 
E 4 HOH A 108 508 108 HOH TIP . 
E 4 HOH A 109 509 109 HOH TIP . 
E 4 HOH A 110 510 110 HOH TIP . 
E 4 HOH A 111 511 111 HOH TIP . 
E 4 HOH A 112 512 112 HOH TIP . 
E 4 HOH A 113 513 113 HOH TIP . 
E 4 HOH A 114 514 114 HOH TIP . 
E 4 HOH A 115 515 115 HOH TIP . 
E 4 HOH A 116 516 116 HOH TIP . 
E 4 HOH A 117 517 117 HOH TIP . 
E 4 HOH A 118 518 118 HOH TIP . 
E 4 HOH A 119 519 119 HOH TIP . 
E 4 HOH A 120 520 120 HOH TIP . 
E 4 HOH A 121 521 121 HOH TIP . 
E 4 HOH A 122 522 122 HOH TIP . 
E 4 HOH A 123 523 123 HOH TIP . 
E 4 HOH A 124 524 124 HOH TIP . 
E 4 HOH A 125 525 125 HOH TIP . 
E 4 HOH A 126 526 126 HOH TIP . 
E 4 HOH A 127 527 127 HOH TIP . 
E 4 HOH A 128 528 128 HOH TIP . 
E 4 HOH A 129 529 129 HOH TIP . 
E 4 HOH A 130 530 130 HOH TIP . 
E 4 HOH A 131 531 131 HOH TIP . 
E 4 HOH A 132 532 132 HOH TIP . 
E 4 HOH A 133 533 133 HOH TIP . 
E 4 HOH A 134 534 134 HOH TIP . 
E 4 HOH A 135 535 135 HOH TIP . 
E 4 HOH A 136 536 136 HOH TIP . 
E 4 HOH A 137 537 137 HOH TIP . 
E 4 HOH A 138 538 138 HOH TIP . 
E 4 HOH A 139 539 139 HOH TIP . 
E 4 HOH A 140 540 140 HOH TIP . 
E 4 HOH A 141 541 141 HOH TIP . 
E 4 HOH A 142 542 142 HOH TIP . 
E 4 HOH A 143 543 143 HOH TIP . 
E 4 HOH A 144 544 144 HOH TIP . 
E 4 HOH A 145 545 145 HOH TIP . 
E 4 HOH A 146 546 146 HOH TIP . 
E 4 HOH A 147 547 147 HOH TIP . 
E 4 HOH A 148 548 148 HOH TIP . 
E 4 HOH A 149 549 149 HOH TIP . 
E 4 HOH A 150 550 150 HOH TIP . 
E 4 HOH A 151 551 151 HOH TIP . 
E 4 HOH A 152 552 152 HOH TIP . 
E 4 HOH A 153 553 153 HOH TIP . 
E 4 HOH A 154 554 154 HOH TIP . 
E 4 HOH A 155 555 155 HOH TIP . 
E 4 HOH A 156 556 156 HOH TIP . 
E 4 HOH A 157 557 157 HOH TIP . 
E 4 HOH A 158 558 158 HOH TIP . 
E 4 HOH A 159 559 159 HOH TIP . 
E 4 HOH A 160 560 160 HOH TIP . 
E 4 HOH A 161 561 161 HOH TIP . 
E 4 HOH A 162 562 162 HOH TIP . 
E 4 HOH A 163 563 163 HOH TIP . 
E 4 HOH A 164 564 164 HOH TIP . 
E 4 HOH A 165 565 165 HOH TIP . 
E 4 HOH A 166 566 166 HOH TIP . 
E 4 HOH A 167 567 167 HOH TIP . 
E 4 HOH A 168 568 168 HOH TIP . 
E 4 HOH A 169 569 169 HOH TIP . 
E 4 HOH A 170 570 170 HOH TIP . 
E 4 HOH A 171 571 171 HOH TIP . 
E 4 HOH A 172 572 172 HOH TIP . 
E 4 HOH A 173 573 173 HOH TIP . 
E 4 HOH A 174 574 174 HOH TIP . 
E 4 HOH A 175 575 175 HOH TIP . 
E 4 HOH A 176 576 176 HOH TIP . 
E 4 HOH A 177 577 177 HOH TIP . 
E 4 HOH A 178 578 178 HOH TIP . 
E 4 HOH A 179 579 179 HOH TIP . 
E 4 HOH A 180 580 180 HOH TIP . 
E 4 HOH A 181 581 181 HOH TIP . 
E 4 HOH A 182 582 182 HOH TIP . 
E 4 HOH A 183 583 183 HOH TIP . 
E 4 HOH A 184 584 184 HOH TIP . 
E 4 HOH A 185 585 185 HOH TIP . 
E 4 HOH A 186 586 186 HOH TIP . 
E 4 HOH A 187 587 187 HOH TIP . 
E 4 HOH A 188 588 188 HOH TIP . 
E 4 HOH A 189 589 189 HOH TIP . 
E 4 HOH A 190 590 190 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 3 -14.508 -8.317 6.488 1 59.15 ? N SAM 400 A 1 
HETATM 2 C CA SAM . . . D 3 -14.01 -6.916 6.912 1 57.36 ? CA SAM 400 A 1 
HETATM 3 C C SAM . . . D 3 -14.988 -5.945 6.43 1 59.71 ? C SAM 400 A 1 
HETATM 4 O O SAM . . . D 3 -15.613 -6.293 5.363 1 58.18 ? O SAM 400 A 1 
HETATM 5 O OXT SAM . . . D 3 -15.141 -4.864 7.11 1 57.35 ? OXT SAM 400 A 1 
HETATM 6 C CB SAM . . . D 3 -12.693 -6.716 6.29 1 49.97 ? CB SAM 400 A 1 
HETATM 7 C CG SAM . . . D 3 -11.76 -5.584 6.389 1 37.79 ? CG SAM 400 A 1 
HETATM 8 S SD SAM . . . D 3 -10.26 -5.801 5.394 1 23.64 ? SD SAM 400 A 1 
HETATM 9 C CE SAM . . . D 3 -10.396 -7.353 4.507 1 41.78 ? CE SAM 400 A 1 
HETATM 10 C C5' SAM . . . D 3 -8.683 -6.022 6.677 1 34.83 ? C5' SAM 400 A 1 
HETATM 11 C C4' SAM . . . D 3 -8.599 -5.251 7.114 1 36 ? C4' SAM 400 A 1 
HETATM 12 O O4' SAM . . . D 3 -8.641 -4.184 6.135 1 44.79 ? O4' SAM 400 A 1 
HETATM 13 C C3' SAM . . . D 3 -8.36 -4.585 8.457 1 44.96 ? C3' SAM 400 A 1 
HETATM 14 O O3' SAM . . . D 3 -7.028 -4.906 8.952 1 53.2 ? O3' SAM 400 A 1 
HETATM 15 C C2' SAM . . . D 3 -8.566 -3.126 8.143 1 35.92 ? C2' SAM 400 A 1 
HETATM 16 O O2' SAM . . . D 3 -7.686 -2.441 8.95 1 23.1 ? O2' SAM 400 A 1 
HETATM 17 C C1' SAM . . . D 3 -8.564 -2.909 6.62 1 38.3 ? C1' SAM 400 A 1 
HETATM 18 N N9 SAM . . . D 3 -8.833 -1.891 5.751 1 19.13 ? N9 SAM 400 A 1 
HETATM 19 C C8 SAM . . . D 3 -9.196 -2.382 4.47 1 19.56 ? C8 SAM 400 A 1 
HETATM 20 N N7 SAM . . . D 3 -9.565 -1.492 3.654 1 20.17 ? N7 SAM 400 A 1 
HETATM 21 C C5 SAM . . . D 3 -9.464 -0.362 4.388 1 19.81 ? C5 SAM 400 A 1 
HETATM 22 C C6 SAM . . . D 3 -9.822 1.016 4.012 1 23.27 ? C6 SAM 400 A 1 
HETATM 23 N N6 SAM . . . D 3 -10.329 1.311 2.838 1 23.33 ? N6 SAM 400 A 1 
HETATM 24 N N1 SAM . . . D 3 -9.603 1.934 4.993 1 21.68 ? N1 SAM 400 A 1 
HETATM 25 C C2 SAM . . . D 3 -9.089 1.624 6.258 1 29.46 ? C2 SAM 400 A 1 
HETATM 26 N N3 SAM . . . D 3 -8.766 0.358 6.674 1 22.37 ? N3 SAM 400 A 1 
HETATM 27 C C4 SAM . . . D 3 -8.965 -0.569 5.716 1 26.16 ? C4 SAM 400 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#