data_1V35 # _model_server_result.job_id 00YiFd07XOlmUWnC7UKUMQ _model_server_result.datetime_utc '2024-11-01 10:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1V35 # _exptl.entry_id 1V35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V35 _cell.length_a 133.315 _cell.length_b 133.315 _cell.length_c 83.752 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.315 133.315 41.876 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 1V35 _atom_sites.fract_transf_matrix[1][1] 0.007501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 501 501 NAI NAD . D 2 NAI B 1 601 601 NAI NAD . E 3 HOH A 1 502 2 HOH HOH . E 3 HOH A 2 503 4 HOH HOH . E 3 HOH A 3 504 8 HOH HOH . E 3 HOH A 4 505 9 HOH HOH . E 3 HOH A 5 506 11 HOH HOH . E 3 HOH A 6 507 12 HOH HOH . E 3 HOH A 7 508 13 HOH HOH . E 3 HOH A 8 509 14 HOH HOH . E 3 HOH A 9 510 16 HOH HOH . E 3 HOH A 10 511 18 HOH HOH . E 3 HOH A 11 512 19 HOH HOH . E 3 HOH A 12 513 20 HOH HOH . E 3 HOH A 13 514 21 HOH HOH . E 3 HOH A 14 515 22 HOH HOH . E 3 HOH A 15 516 26 HOH HOH . E 3 HOH A 16 517 29 HOH HOH . E 3 HOH A 17 518 31 HOH HOH . E 3 HOH A 18 519 37 HOH HOH . E 3 HOH A 19 520 38 HOH HOH . E 3 HOH A 20 521 39 HOH HOH . E 3 HOH A 21 522 43 HOH HOH . E 3 HOH A 22 523 44 HOH HOH . E 3 HOH A 23 524 46 HOH HOH . E 3 HOH A 24 525 47 HOH HOH . E 3 HOH A 25 526 49 HOH HOH . E 3 HOH A 26 527 51 HOH HOH . E 3 HOH A 27 528 52 HOH HOH . E 3 HOH A 28 529 55 HOH HOH . E 3 HOH A 29 530 61 HOH HOH . E 3 HOH A 30 531 63 HOH HOH . E 3 HOH A 31 532 65 HOH HOH . E 3 HOH A 32 533 66 HOH HOH . E 3 HOH A 33 534 69 HOH HOH . E 3 HOH A 34 535 71 HOH HOH . E 3 HOH A 35 536 74 HOH HOH . E 3 HOH A 36 537 76 HOH HOH . E 3 HOH A 37 538 77 HOH HOH . E 3 HOH A 38 539 78 HOH HOH . E 3 HOH A 39 540 80 HOH HOH . E 3 HOH A 40 541 81 HOH HOH . E 3 HOH A 41 542 83 HOH HOH . E 3 HOH A 42 543 92 HOH HOH . E 3 HOH A 43 544 94 HOH HOH . E 3 HOH A 44 545 96 HOH HOH . E 3 HOH A 45 546 97 HOH HOH . E 3 HOH A 46 547 99 HOH HOH . E 3 HOH A 47 548 100 HOH HOH . E 3 HOH A 48 549 102 HOH HOH . E 3 HOH A 49 550 103 HOH HOH . E 3 HOH A 50 551 105 HOH HOH . E 3 HOH A 51 552 106 HOH HOH . E 3 HOH A 52 553 107 HOH HOH . E 3 HOH A 53 554 108 HOH HOH . E 3 HOH A 54 555 110 HOH HOH . E 3 HOH A 55 556 111 HOH HOH . E 3 HOH A 56 557 115 HOH HOH . E 3 HOH A 57 558 116 HOH HOH . E 3 HOH A 58 559 119 HOH HOH . E 3 HOH A 59 560 123 HOH HOH . E 3 HOH A 60 561 124 HOH HOH . E 3 HOH A 61 562 125 HOH HOH . E 3 HOH A 62 563 126 HOH HOH . E 3 HOH A 63 564 127 HOH HOH . E 3 HOH A 64 565 128 HOH HOH . E 3 HOH A 65 566 129 HOH HOH . E 3 HOH A 66 567 131 HOH HOH . E 3 HOH A 67 568 132 HOH HOH . E 3 HOH A 68 569 138 HOH HOH . E 3 HOH A 69 570 141 HOH HOH . E 3 HOH A 70 571 142 HOH HOH . E 3 HOH A 71 572 143 HOH HOH . E 3 HOH A 72 573 144 HOH HOH . E 3 HOH A 73 574 152 HOH HOH . E 3 HOH A 74 575 153 HOH HOH . E 3 HOH A 75 576 154 HOH HOH . E 3 HOH A 76 577 164 HOH HOH . E 3 HOH A 77 578 205 HOH HOH . E 3 HOH A 78 579 206 HOH HOH . E 3 HOH A 79 580 210 HOH HOH . E 3 HOH A 80 581 212 HOH HOH . F 3 HOH B 1 602 1 HOH HOH . F 3 HOH B 2 603 3 HOH HOH . F 3 HOH B 3 604 5 HOH HOH . F 3 HOH B 4 605 6 HOH HOH . F 3 HOH B 5 606 7 HOH HOH . F 3 HOH B 6 607 10 HOH HOH . F 3 HOH B 7 608 15 HOH HOH . F 3 HOH B 8 609 17 HOH HOH . F 3 HOH B 9 610 23 HOH HOH . F 3 HOH B 10 611 24 HOH HOH . F 3 HOH B 11 612 25 HOH HOH . F 3 HOH B 12 613 27 HOH HOH . F 3 HOH B 13 614 28 HOH HOH . F 3 HOH B 14 615 30 HOH HOH . F 3 HOH B 15 616 32 HOH HOH . F 3 HOH B 16 617 33 HOH HOH . F 3 HOH B 17 618 34 HOH HOH . F 3 HOH B 18 619 35 HOH HOH . F 3 HOH B 19 620 36 HOH HOH . F 3 HOH B 20 621 40 HOH HOH . F 3 HOH B 21 622 41 HOH HOH . F 3 HOH B 22 623 42 HOH HOH . F 3 HOH B 23 624 45 HOH HOH . F 3 HOH B 24 625 48 HOH HOH . F 3 HOH B 25 626 50 HOH HOH . F 3 HOH B 26 627 53 HOH HOH . F 3 HOH B 27 628 54 HOH HOH . F 3 HOH B 28 629 56 HOH HOH . F 3 HOH B 29 630 57 HOH HOH . F 3 HOH B 30 631 58 HOH HOH . F 3 HOH B 31 632 59 HOH HOH . F 3 HOH B 32 633 60 HOH HOH . F 3 HOH B 33 634 62 HOH HOH . F 3 HOH B 34 635 64 HOH HOH . F 3 HOH B 35 636 67 HOH HOH . F 3 HOH B 36 637 68 HOH HOH . F 3 HOH B 37 638 70 HOH HOH . F 3 HOH B 38 639 72 HOH HOH . F 3 HOH B 39 640 73 HOH HOH . F 3 HOH B 40 641 75 HOH HOH . F 3 HOH B 41 642 79 HOH HOH . F 3 HOH B 42 643 82 HOH HOH . F 3 HOH B 43 644 84 HOH HOH . F 3 HOH B 44 645 85 HOH HOH . F 3 HOH B 45 646 86 HOH HOH . F 3 HOH B 46 647 87 HOH HOH . F 3 HOH B 47 648 88 HOH HOH . F 3 HOH B 48 649 89 HOH HOH . F 3 HOH B 49 650 90 HOH HOH . F 3 HOH B 50 651 91 HOH HOH . F 3 HOH B 51 652 93 HOH HOH . F 3 HOH B 52 653 95 HOH HOH . F 3 HOH B 53 654 98 HOH HOH . F 3 HOH B 54 655 101 HOH HOH . F 3 HOH B 55 656 109 HOH HOH . F 3 HOH B 56 657 112 HOH HOH . F 3 HOH B 57 658 113 HOH HOH . F 3 HOH B 58 659 114 HOH HOH . F 3 HOH B 59 660 117 HOH HOH . F 3 HOH B 60 661 118 HOH HOH . F 3 HOH B 61 662 120 HOH HOH . F 3 HOH B 62 663 121 HOH HOH . F 3 HOH B 63 664 130 HOH HOH . F 3 HOH B 64 665 133 HOH HOH . F 3 HOH B 65 666 134 HOH HOH . F 3 HOH B 66 667 135 HOH HOH . F 3 HOH B 67 668 136 HOH HOH . F 3 HOH B 68 669 137 HOH HOH . F 3 HOH B 69 670 139 HOH HOH . F 3 HOH B 70 671 140 HOH HOH . F 3 HOH B 71 672 145 HOH HOH . F 3 HOH B 72 673 146 HOH HOH . F 3 HOH B 73 674 147 HOH HOH . F 3 HOH B 74 675 148 HOH HOH . F 3 HOH B 75 676 149 HOH HOH . F 3 HOH B 76 677 150 HOH HOH . F 3 HOH B 77 678 151 HOH HOH . F 3 HOH B 78 679 155 HOH HOH . F 3 HOH B 79 680 156 HOH HOH . F 3 HOH B 80 681 158 HOH HOH . F 3 HOH B 81 682 159 HOH HOH . F 3 HOH B 82 683 160 HOH HOH . F 3 HOH B 83 684 161 HOH HOH . F 3 HOH B 84 685 162 HOH HOH . F 3 HOH B 85 686 163 HOH HOH . F 3 HOH B 86 687 165 HOH HOH . F 3 HOH B 87 688 166 HOH HOH . F 3 HOH B 88 689 167 HOH HOH . F 3 HOH B 89 690 168 HOH HOH . F 3 HOH B 90 691 200 HOH HOH . F 3 HOH B 91 692 201 HOH HOH . F 3 HOH B 92 693 202 HOH HOH . F 3 HOH B 93 694 203 HOH HOH . F 3 HOH B 94 695 204 HOH HOH . F 3 HOH B 95 696 207 HOH HOH . F 3 HOH B 96 697 208 HOH HOH . F 3 HOH B 97 698 209 HOH HOH . F 3 HOH B 98 699 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 51.798 89.422 40.794 1 95.6 ? PA NAI 501 A 1 HETATM 2 O O1A NAI . . . C 2 52.987 89.621 39.931 1 95.66 ? O1A NAI 501 A 1 HETATM 3 O O2A NAI . . . C 2 51.137 90.31 41.789 1 95.18 ? O2A NAI 501 A 1 HETATM 4 O O5B NAI . . . C 2 50.817 88.31 40.142 1 94.95 ? O5B NAI 501 A 1 HETATM 5 C C5B NAI . . . C 2 51.173 87.467 38.977 1 88.23 ? C5B NAI 501 A 1 HETATM 6 C C4B NAI . . . C 2 51.329 86.055 39.483 1 87.74 ? C4B NAI 501 A 1 HETATM 7 O O4B NAI . . . C 2 51.66 85.211 38.31 1 86.4 ? O4B NAI 501 A 1 HETATM 8 C C3B NAI . . . C 2 52.526 85.797 40.478 1 86.31 ? C3B NAI 501 A 1 HETATM 9 O O3B NAI . . . C 2 52.016 85.316 41.756 1 89.53 ? O3B NAI 501 A 1 HETATM 10 C C2B NAI . . . C 2 53.44 84.803 39.763 1 85.83 ? C2B NAI 501 A 1 HETATM 11 O O2B NAI . . . C 2 54.223 83.943 40.529 1 84.56 ? O2B NAI 501 A 1 HETATM 12 C C1B NAI . . . C 2 52.408 84.14 38.838 1 84.43 ? C1B NAI 501 A 1 HETATM 13 N N9A NAI . . . C 2 53.02 83.44 37.714 1 80.76 ? N9A NAI 501 A 1 HETATM 14 C C8A NAI . . . C 2 53.933 83.811 36.724 1 78.81 ? C8A NAI 501 A 1 HETATM 15 N N7A NAI . . . C 2 54.221 82.831 35.876 1 76.51 ? N7A NAI 501 A 1 HETATM 16 C C5A NAI . . . C 2 53.511 81.751 36.257 1 74.63 ? C5A NAI 501 A 1 HETATM 17 C C6A NAI . . . C 2 53.393 80.373 35.732 1 69.8 ? C6A NAI 501 A 1 HETATM 18 N N6A NAI . . . C 2 54.055 79.953 34.678 1 66.6 ? N6A NAI 501 A 1 HETATM 19 N N1A NAI . . . C 2 52.524 79.55 36.443 1 69.55 ? N1A NAI 501 A 1 HETATM 20 C C2A NAI . . . C 2 51.815 79.908 37.529 1 71.48 ? C2A NAI 501 A 1 HETATM 21 N N3A NAI . . . C 2 51.888 81.2 38.07 1 75.63 ? N3A NAI 501 A 1 HETATM 22 C C4A NAI . . . C 2 52.749 82.094 37.403 1 77.96 ? C4A NAI 501 A 1 HETATM 23 O O3 NAI . . . C 2 51.074 90.419 39.729 1 95.06 ? O3 NAI 501 A 1 HETATM 24 P PN NAI . . . C 2 49.764 91.444 39.679 1 88.33 ? PN NAI 501 A 1 HETATM 25 O O1N NAI . . . C 2 50.273 92.812 39.476 1 89.34 ? O1N NAI 501 A 1 HETATM 26 O O2N NAI . . . C 2 48.911 91.148 40.878 1 85.86 ? O2N NAI 501 A 1 HETATM 27 O O5D NAI . . . C 2 49.07 90.979 38.29 1 88.47 ? O5D NAI 501 A 1 HETATM 28 C C5D NAI . . . C 2 48.442 89.662 38.172 1 82.96 ? C5D NAI 501 A 1 HETATM 29 C C4D NAI . . . C 2 47.472 89.665 37.049 1 79.34 ? C4D NAI 501 A 1 HETATM 30 O O4D NAI . . . C 2 46.609 90.881 37.136 1 78.96 ? O4D NAI 501 A 1 HETATM 31 C C3D NAI . . . C 2 48.12 89.74 35.627 1 78.24 ? C3D NAI 501 A 1 HETATM 32 O O3D NAI . . . C 2 47.396 88.914 34.691 1 74.89 ? O3D NAI 501 A 1 HETATM 33 C C2D NAI . . . C 2 48.026 91.231 35.248 1 78.46 ? C2D NAI 501 A 1 HETATM 34 O O2D NAI . . . C 2 48.124 91.447 33.867 1 78.45 ? O2D NAI 501 A 1 HETATM 35 C C1D NAI . . . C 2 46.64 91.636 35.895 1 80.41 ? C1D NAI 501 A 1 HETATM 36 N N1N NAI . . . C 2 46.438 93.097 36.253 1 81.77 ? N1N NAI 501 A 1 HETATM 37 C C2N NAI . . . C 2 47.584 93.762 36.851 1 84.97 ? C2N NAI 501 A 1 HETATM 38 C C3N NAI . . . C 2 48.029 94.983 36.525 1 86.84 ? C3N NAI 501 A 1 HETATM 39 C C7N NAI . . . C 2 49.23 95.574 37.239 1 87.87 ? C7N NAI 501 A 1 HETATM 40 O O7N NAI . . . C 2 49.114 96.718 37.731 1 86.86 ? O7N NAI 501 A 1 HETATM 41 N N7N NAI . . . C 2 50.367 94.864 37.332 1 91.05 ? N7N NAI 501 A 1 HETATM 42 C C4N NAI . . . C 2 47.372 95.841 35.446 1 83.41 ? C4N NAI 501 A 1 HETATM 43 C C5N NAI . . . C 2 46.181 95.162 34.797 1 81.39 ? C5N NAI 501 A 1 HETATM 44 C C6N NAI . . . C 2 45.769 93.854 35.209 1 80.19 ? C6N NAI 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #