data_1V3P # _model_server_result.job_id -Z4RtnhWyJE90Ttd78CTPg _model_server_result.datetime_utc '2024-12-06 07:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":115}' # _entry.id 1V3P # _exptl.entry_id 1V3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V3P _cell.length_a 36.18 _cell.length_b 36.38 _cell.length_c 63.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 36.18 36.38 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 36.18 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 36.38 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 1 A DG 1 1_555 A P C38 2 A C38 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 A O3' C38 2 A C38 2 1_555 A P DG 3 A DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale3 B O3' DG 1 B DG 9 1_555 B P C38 2 B C38 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale4 B O3' C38 2 B C38 10 1_555 B P DG 3 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc1 A O6 DG 5 A DG 5 1_555 C K K . A K 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A O6 DG 5 A DG 5 3_655 C K K . A K 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A O6 DG 5 A DG 5 2_665 C K K . A K 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 A O6 DG 5 A DG 5 4_565 C K K . A K 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 A O6 DG 5 A DG 5 4_565 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc6 A O6 DG 5 A DG 5 3_655 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc7 E O HOH . A HOH 49 1_555 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 E O HOH . A HOH 49 2_665 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc9 C K K . A K 114 1_555 B O6 DG 5 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc10 C K K . A K 114 1_555 B O6 DG 5 B DG 13 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc11 C K K . A K 114 1_555 B O6 DG 5 B DG 13 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc12 C K K . A K 114 1_555 B O6 DG 5 B DG 13 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc13 C K K . A K 114 1_555 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc14 C K K . A K 114 1_555 D K K . B K 115 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc15 C K K . A K 114 1_555 D K K . B K 115 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc16 C K K . A K 114 1_555 D K K . B K 115 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc17 B O6 DG 5 B DG 13 1_555 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc18 B O6 DG 5 B DG 13 2_665 D K K . B K 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 8 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C38 2 A C38 2 1_555 B N1 DG 7 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C38 2 A C38 2 1_555 B O6 DG 7 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C38 2 A C38 2 1_555 B N2 DG 7 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog7 A N2 DG 3 A DG 3 1_555 B N7 DA 6 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog8 A N3 DG 3 A DG 3 1_555 B N6 DA 6 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 A N6 DA 6 A DA 6 1_555 B N3 DG 3 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 A N7 DA 6 A DA 6 1_555 B N2 DG 3 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 7 A DG 7 1_555 B N3 C38 2 B C38 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 7 A DG 7 1_555 B O2 C38 2 B C38 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 7 A DG 7 1_555 B N4 C38 2 B C38 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 8 A DC 8 1_555 B N1 DG 1 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 8 A DC 8 1_555 B O6 DG 1 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 8 A DC 8 1_555 B N2 DG 1 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V3P _atom_sites.fract_transf_matrix[1][1] 0.02764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 114 114 K K . D 2 K B 1 115 115 K K . E 3 HOH A 1 17 17 HOH HOH . E 3 HOH A 2 19 19 HOH HOH . E 3 HOH A 3 21 21 HOH HOH . E 3 HOH A 4 23 23 HOH HOH . E 3 HOH A 5 24 24 HOH HOH . E 3 HOH A 6 25 25 HOH HOH . E 3 HOH A 7 26 26 HOH HOH . E 3 HOH A 8 28 28 HOH HOH . E 3 HOH A 9 29 29 HOH HOH . E 3 HOH A 10 31 31 HOH HOH . E 3 HOH A 11 33 33 HOH HOH . E 3 HOH A 12 35 35 HOH HOH . E 3 HOH A 13 37 37 HOH HOH . E 3 HOH A 14 38 38 HOH HOH . E 3 HOH A 15 42 42 HOH HOH . E 3 HOH A 16 44 44 HOH HOH . E 3 HOH A 17 46 46 HOH HOH . E 3 HOH A 18 47 47 HOH HOH . E 3 HOH A 19 49 49 HOH HOH . E 3 HOH A 20 51 51 HOH HOH . E 3 HOH A 21 53 53 HOH HOH . E 3 HOH A 22 55 55 HOH HOH . E 3 HOH A 23 58 58 HOH HOH . E 3 HOH A 24 61 61 HOH HOH . E 3 HOH A 25 63 63 HOH HOH . E 3 HOH A 26 64 64 HOH HOH . E 3 HOH A 27 66 66 HOH HOH . E 3 HOH A 28 67 67 HOH HOH . E 3 HOH A 29 71 71 HOH HOH . E 3 HOH A 30 76 76 HOH HOH . E 3 HOH A 31 81 81 HOH HOH . E 3 HOH A 32 85 85 HOH HOH . E 3 HOH A 33 86 86 HOH HOH . E 3 HOH A 34 87 87 HOH HOH . E 3 HOH A 35 90 90 HOH HOH . E 3 HOH A 36 92 92 HOH HOH . E 3 HOH A 37 93 93 HOH HOH . E 3 HOH A 38 94 94 HOH HOH . E 3 HOH A 39 97 97 HOH HOH . E 3 HOH A 40 98 98 HOH HOH . E 3 HOH A 41 99 99 HOH HOH . E 3 HOH A 42 100 100 HOH HOH . E 3 HOH A 43 102 102 HOH HOH . E 3 HOH A 44 103 103 HOH HOH . E 3 HOH A 45 105 105 HOH HOH . E 3 HOH A 46 106 106 HOH HOH . E 3 HOH A 47 109 109 HOH HOH . E 3 HOH A 48 110 110 HOH HOH . E 3 HOH A 49 112 112 HOH HOH . E 3 HOH A 50 113 113 HOH HOH . F 3 HOH B 1 18 18 HOH HOH . F 3 HOH B 2 20 20 HOH HOH . F 3 HOH B 3 22 22 HOH HOH . F 3 HOH B 4 27 27 HOH HOH . F 3 HOH B 5 30 30 HOH HOH . F 3 HOH B 6 32 32 HOH HOH . F 3 HOH B 7 34 34 HOH HOH . F 3 HOH B 8 36 36 HOH HOH . F 3 HOH B 9 39 39 HOH HOH . F 3 HOH B 10 40 40 HOH HOH . F 3 HOH B 11 41 41 HOH HOH . F 3 HOH B 12 43 43 HOH HOH . F 3 HOH B 13 45 45 HOH HOH . F 3 HOH B 14 48 48 HOH HOH . F 3 HOH B 15 50 50 HOH HOH . F 3 HOH B 16 52 52 HOH HOH . F 3 HOH B 17 54 54 HOH HOH . F 3 HOH B 18 56 56 HOH HOH . F 3 HOH B 19 57 57 HOH HOH . F 3 HOH B 20 59 59 HOH HOH . F 3 HOH B 21 60 60 HOH HOH . F 3 HOH B 22 62 62 HOH HOH . F 3 HOH B 23 65 65 HOH HOH . F 3 HOH B 24 68 68 HOH HOH . F 3 HOH B 25 69 69 HOH HOH . F 3 HOH B 26 70 70 HOH HOH . F 3 HOH B 27 72 72 HOH HOH . F 3 HOH B 28 73 73 HOH HOH . F 3 HOH B 29 74 74 HOH HOH . F 3 HOH B 30 75 75 HOH HOH . F 3 HOH B 31 77 77 HOH HOH . F 3 HOH B 32 78 78 HOH HOH . F 3 HOH B 33 79 79 HOH HOH . F 3 HOH B 34 80 80 HOH HOH . F 3 HOH B 35 82 82 HOH HOH . F 3 HOH B 36 83 83 HOH HOH . F 3 HOH B 37 84 84 HOH HOH . F 3 HOH B 38 88 88 HOH HOH . F 3 HOH B 39 89 89 HOH HOH . F 3 HOH B 40 91 91 HOH HOH . F 3 HOH B 41 95 95 HOH HOH . F 3 HOH B 42 96 96 HOH HOH . F 3 HOH B 43 101 101 HOH HOH . F 3 HOH B 44 104 104 HOH HOH . F 3 HOH B 45 107 107 HOH HOH . F 3 HOH B 46 108 108 HOH HOH . F 3 HOH B 47 111 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.09 _atom_site.Cartn_y 18.19 _atom_site.Cartn_z 3.375 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 23.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 115 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #