data_1V3S # _model_server_result.job_id AzdPitWgrL3XlKKFdSwyiw _model_server_result.datetime_utc '2025-01-13 08:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 1V3S # _exptl.entry_id 1V3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V3S _cell.length_a 53.577 _cell.length_b 75.509 _cell.length_c 76.913 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1V3S _atom_sites.fract_transf_matrix[1][1] 0.018665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 200 200 ATP ATP . E 2 ATP B 1 300 300 ATP ATP . F 2 ATP C 1 400 400 ATP ATP . G 3 HOH A 1 201 5 HOH HOH . G 3 HOH A 2 202 12 HOH HOH . G 3 HOH A 3 203 13 HOH HOH . G 3 HOH A 4 204 17 HOH HOH . G 3 HOH A 5 205 26 HOH HOH . G 3 HOH A 6 206 36 HOH HOH . G 3 HOH A 7 207 41 HOH HOH . G 3 HOH A 8 208 43 HOH HOH . G 3 HOH A 9 209 44 HOH HOH . G 3 HOH A 10 210 45 HOH HOH . G 3 HOH A 11 211 55 HOH HOH . G 3 HOH A 12 212 67 HOH HOH . G 3 HOH A 13 213 75 HOH HOH . G 3 HOH A 14 214 77 HOH HOH . G 3 HOH A 15 215 79 HOH HOH . G 3 HOH A 16 216 84 HOH HOH . G 3 HOH A 17 217 85 HOH HOH . G 3 HOH A 18 218 89 HOH HOH . G 3 HOH A 19 219 90 HOH HOH . G 3 HOH A 20 220 94 HOH HOH . G 3 HOH A 21 221 95 HOH HOH . G 3 HOH A 22 222 96 HOH HOH . G 3 HOH A 23 223 107 HOH HOH . G 3 HOH A 24 224 110 HOH HOH . G 3 HOH A 25 225 111 HOH HOH . G 3 HOH A 26 226 112 HOH HOH . G 3 HOH A 27 227 114 HOH HOH . G 3 HOH A 28 228 116 HOH HOH . G 3 HOH A 29 229 122 HOH HOH . G 3 HOH A 30 230 123 HOH HOH . G 3 HOH A 31 231 128 HOH HOH . G 3 HOH A 32 232 135 HOH HOH . G 3 HOH A 33 233 145 HOH HOH . G 3 HOH A 34 234 146 HOH HOH . G 3 HOH A 35 235 147 HOH HOH . G 3 HOH A 36 236 151 HOH HOH . H 3 HOH B 1 301 1 HOH HOH . H 3 HOH B 2 302 3 HOH HOH . H 3 HOH B 3 303 4 HOH HOH . H 3 HOH B 4 304 6 HOH HOH . H 3 HOH B 5 305 9 HOH HOH . H 3 HOH B 6 306 11 HOH HOH . H 3 HOH B 7 307 14 HOH HOH . H 3 HOH B 8 308 16 HOH HOH . H 3 HOH B 9 309 18 HOH HOH . H 3 HOH B 10 310 22 HOH HOH . H 3 HOH B 11 311 23 HOH HOH . H 3 HOH B 12 312 24 HOH HOH . H 3 HOH B 13 313 29 HOH HOH . H 3 HOH B 14 314 30 HOH HOH . H 3 HOH B 15 315 31 HOH HOH . H 3 HOH B 16 316 34 HOH HOH . H 3 HOH B 17 317 35 HOH HOH . H 3 HOH B 18 318 37 HOH HOH . H 3 HOH B 19 319 38 HOH HOH . H 3 HOH B 20 320 39 HOH HOH . H 3 HOH B 21 321 48 HOH HOH . H 3 HOH B 22 322 50 HOH HOH . H 3 HOH B 23 323 51 HOH HOH . H 3 HOH B 24 324 52 HOH HOH . H 3 HOH B 25 325 53 HOH HOH . H 3 HOH B 26 326 59 HOH HOH . H 3 HOH B 27 327 60 HOH HOH . H 3 HOH B 28 328 62 HOH HOH . H 3 HOH B 29 329 64 HOH HOH . H 3 HOH B 30 330 65 HOH HOH . H 3 HOH B 31 331 66 HOH HOH . H 3 HOH B 32 332 70 HOH HOH . H 3 HOH B 33 333 72 HOH HOH . H 3 HOH B 34 334 73 HOH HOH . H 3 HOH B 35 335 76 HOH HOH . H 3 HOH B 36 336 80 HOH HOH . H 3 HOH B 37 337 81 HOH HOH . H 3 HOH B 38 338 82 HOH HOH . H 3 HOH B 39 339 83 HOH HOH . H 3 HOH B 40 340 88 HOH HOH . H 3 HOH B 41 341 93 HOH HOH . H 3 HOH B 42 342 100 HOH HOH . H 3 HOH B 43 343 102 HOH HOH . H 3 HOH B 44 344 103 HOH HOH . H 3 HOH B 45 345 104 HOH HOH . H 3 HOH B 46 346 105 HOH HOH . H 3 HOH B 47 347 109 HOH HOH . H 3 HOH B 48 348 119 HOH HOH . H 3 HOH B 49 349 125 HOH HOH . H 3 HOH B 50 350 129 HOH HOH . H 3 HOH B 51 351 130 HOH HOH . H 3 HOH B 52 352 133 HOH HOH . H 3 HOH B 53 353 134 HOH HOH . H 3 HOH B 54 354 136 HOH HOH . H 3 HOH B 55 355 138 HOH HOH . H 3 HOH B 56 356 141 HOH HOH . H 3 HOH B 57 357 142 HOH HOH . H 3 HOH B 58 358 143 HOH HOH . H 3 HOH B 59 359 148 HOH HOH . H 3 HOH B 60 360 149 HOH HOH . H 3 HOH B 61 361 152 HOH HOH . H 3 HOH B 62 362 153 HOH HOH . I 3 HOH C 1 401 2 HOH HOH . I 3 HOH C 2 402 7 HOH HOH . I 3 HOH C 3 403 8 HOH HOH . I 3 HOH C 4 404 10 HOH HOH . I 3 HOH C 5 405 15 HOH HOH . I 3 HOH C 6 406 19 HOH HOH . I 3 HOH C 7 407 20 HOH HOH . I 3 HOH C 8 408 21 HOH HOH . I 3 HOH C 9 409 25 HOH HOH . I 3 HOH C 10 410 27 HOH HOH . I 3 HOH C 11 411 28 HOH HOH . I 3 HOH C 12 412 32 HOH HOH . I 3 HOH C 13 413 33 HOH HOH . I 3 HOH C 14 414 40 HOH HOH . I 3 HOH C 15 415 42 HOH HOH . I 3 HOH C 16 416 46 HOH HOH . I 3 HOH C 17 417 47 HOH HOH . I 3 HOH C 18 418 49 HOH HOH . I 3 HOH C 19 419 54 HOH HOH . I 3 HOH C 20 420 56 HOH HOH . I 3 HOH C 21 421 57 HOH HOH . I 3 HOH C 22 422 58 HOH HOH . I 3 HOH C 23 423 61 HOH HOH . I 3 HOH C 24 424 63 HOH HOH . I 3 HOH C 25 425 68 HOH HOH . I 3 HOH C 26 426 69 HOH HOH . I 3 HOH C 27 427 71 HOH HOH . I 3 HOH C 28 428 74 HOH HOH . I 3 HOH C 29 429 78 HOH HOH . I 3 HOH C 30 430 86 HOH HOH . I 3 HOH C 31 431 87 HOH HOH . I 3 HOH C 32 432 91 HOH HOH . I 3 HOH C 33 433 92 HOH HOH . I 3 HOH C 34 434 97 HOH HOH . I 3 HOH C 35 435 98 HOH HOH . I 3 HOH C 36 436 99 HOH HOH . I 3 HOH C 37 437 101 HOH HOH . I 3 HOH C 38 438 106 HOH HOH . I 3 HOH C 39 439 108 HOH HOH . I 3 HOH C 40 440 113 HOH HOH . I 3 HOH C 41 441 115 HOH HOH . I 3 HOH C 42 442 117 HOH HOH . I 3 HOH C 43 443 118 HOH HOH . I 3 HOH C 44 444 120 HOH HOH . I 3 HOH C 45 445 121 HOH HOH . I 3 HOH C 46 446 124 HOH HOH . I 3 HOH C 47 447 126 HOH HOH . I 3 HOH C 48 448 127 HOH HOH . I 3 HOH C 49 449 131 HOH HOH . I 3 HOH C 50 450 132 HOH HOH . I 3 HOH C 51 451 137 HOH HOH . I 3 HOH C 52 452 139 HOH HOH . I 3 HOH C 53 453 140 HOH HOH . I 3 HOH C 54 454 144 HOH HOH . I 3 HOH C 55 455 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 0.445 5.649 -6.007 1 61.85 ? PG ATP 200 A 1 HETATM 2 O O1G ATP . . . D 2 -0.846 5.031 -5.625 1 55.88 ? O1G ATP 200 A 1 HETATM 3 O O2G ATP . . . D 2 0.272 6.919 -6.987 1 51.02 ? O2G ATP 200 A 1 HETATM 4 O O3G ATP . . . D 2 1.56 4.662 -6.607 1 44.95 ? O3G ATP 200 A 1 HETATM 5 P PB ATP . . . D 2 0.944 7.816 -4.31 1 62.04 ? PB ATP 200 A 1 HETATM 6 O O1B ATP . . . D 2 -0.22 8.461 -4.958 1 54.72 ? O1B ATP 200 A 1 HETATM 7 O O2B ATP . . . D 2 1.605 8.292 -3.075 1 60.09 ? O2B ATP 200 A 1 HETATM 8 O O3B ATP . . . D 2 1.164 6.27 -4.706 1 60.93 ? O3B ATP 200 A 1 HETATM 9 P PA ATP . . . D 2 3.438 7.493 -5.511 1 35.25 ? PA ATP 200 A 1 HETATM 10 O O1A ATP . . . D 2 3.703 6.872 -6.826 1 24.2 ? O1A ATP 200 A 1 HETATM 11 O O2A ATP . . . D 2 3.985 7.025 -4.217 1 46.33 ? O2A ATP 200 A 1 HETATM 12 O O3A ATP . . . D 2 2.068 8.325 -5.349 1 48.85 ? O3A ATP 200 A 1 HETATM 13 O O5' ATP . . . D 2 4.372 8.795 -5.679 1 28.97 ? O5' ATP 200 A 1 HETATM 14 C C5' ATP . . . D 2 5.744 8.654 -6.063 1 14.77 ? C5' ATP 200 A 1 HETATM 15 C C4' ATP . . . D 2 6.423 10.019 -6.219 1 16.76 ? C4' ATP 200 A 1 HETATM 16 O O4' ATP . . . D 2 5.674 10.875 -7.097 1 20.31 ? O4' ATP 200 A 1 HETATM 17 C C3' ATP . . . D 2 6.492 10.774 -4.892 1 16.46 ? C3' ATP 200 A 1 HETATM 18 O O3' ATP . . . D 2 7.651 10.333 -4.18 1 18.95 ? O3' ATP 200 A 1 HETATM 19 C C2' ATP . . . D 2 6.734 12.188 -5.417 1 14.79 ? C2' ATP 200 A 1 HETATM 20 O O2' ATP . . . D 2 8.084 12.342 -5.866 1 15.34 ? O2' ATP 200 A 1 HETATM 21 C C1' ATP . . . D 2 5.782 12.228 -6.615 1 15.33 ? C1' ATP 200 A 1 HETATM 22 N N9 ATP . . . D 2 4.427 12.687 -6.227 1 14.1 ? N9 ATP 200 A 1 HETATM 23 C C8 ATP . . . D 2 3.377 11.915 -5.955 1 14.92 ? C8 ATP 200 A 1 HETATM 24 N N7 ATP . . . D 2 2.301 12.674 -5.754 1 15.68 ? N7 ATP 200 A 1 HETATM 25 C C5 ATP . . . D 2 2.67 13.943 -5.895 1 13.89 ? C5 ATP 200 A 1 HETATM 26 C C6 ATP . . . D 2 2.011 15.164 -5.814 1 15.56 ? C6 ATP 200 A 1 HETATM 27 N N6 ATP . . . D 2 0.702 15.207 -5.582 1 14.3 ? N6 ATP 200 A 1 HETATM 28 N N1 ATP . . . D 2 2.706 16.296 -6.005 1 12.5 ? N1 ATP 200 A 1 HETATM 29 C C2 ATP . . . D 2 4.002 16.271 -6.271 1 15.99 ? C2 ATP 200 A 1 HETATM 30 N N3 ATP . . . D 2 4.658 15.126 -6.361 1 16.99 ? N3 ATP 200 A 1 HETATM 31 C C4 ATP . . . D 2 4.028 13.955 -6.184 1 19.99 ? C4 ATP 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #