data_1V3W # _model_server_result.job_id xeLQ6J40lLRDfHlsfqoPwA _model_server_result.datetime_utc '2024-11-26 21:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3005}' # _entry.id 1V3W # _exptl.entry_id 1V3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V3W _cell.length_a 156.156 _cell.length_b 156.156 _cell.length_c 156.156 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 40 A SER 40 1_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A OG SER 40 A SER 40 31_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A OG SER 40 A SER 40 82_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OD1 ASN 61 A ASN 61 1_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 A OD1 ASN 61 A ASN 61 82_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 A OD1 ASN 61 A ASN 61 31_555 C CA CA . A CA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 A ND1 HIS 65 A HIS 65 1_555 B ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc8 A NE2 HIS 82 A HIS 82 31_555 B ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 A ND2 ASN 83 A ASN 83 1_555 F CA CA . A CA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc10 A ND2 ASN 83 A ASN 83 31_555 F CA CA . A CA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc11 A ND2 ASN 83 A ASN 83 82_555 F CA CA . A CA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc12 A NE2 HIS 87 A HIS 87 1_555 B ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc13 A OE2 GLU 164 A GLU 164 1_555 E CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc14 A OE1 GLU 164 A GLU 164 1_555 E CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc15 A OE1 GLU 164 A GLU 164 76_555 E CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc16 A OE2 GLU 164 A GLU 164 76_555 E CA CA . A CA 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc17 B ZN ZN . A ZN 3001 1_555 L O HOH . A HOH 3007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc18 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc19 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc20 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc21 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc22 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc23 D CA CA . A CA 3003 1_555 L O HOH . A HOH 3016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc24 E CA CA . A CA 3004 1_555 L O HOH . A HOH 3014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc25 E CA CA . A CA 3004 1_555 L O HOH . A HOH 3014 76_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc26 E CA CA . A CA 3004 1_555 L O HOH . A HOH 3015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc27 E CA CA . A CA 3004 1_555 L O HOH . A HOH 3015 76_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V3W _atom_sites.fract_transf_matrix[1][1] 0.006404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 3001 1 ZN ZN . C 3 CA A 1 3002 2 CA CA . D 3 CA A 1 3003 3 CA CA . E 3 CA A 1 3004 4 CA CA . F 3 CA A 1 3005 5 CA CA . G 4 CL A 1 3006 6 CL CL . H 5 EDO A 1 2001 1 EDO EGL . I 5 EDO A 1 2002 2 EDO EGL . J 5 EDO A 1 2003 3 EDO EGL . K 6 GOL A 1 1001 1 GOL GOL . L 7 HOH A 1 3007 1 HOH HOH . L 7 HOH A 2 3008 2 HOH HOH . L 7 HOH A 3 3009 3 HOH HOH . L 7 HOH A 4 3010 4 HOH HOH . L 7 HOH A 5 3011 5 HOH HOH . L 7 HOH A 6 3012 6 HOH HOH . L 7 HOH A 7 3013 7 HOH HOH . L 7 HOH A 8 3014 8 HOH HOH . L 7 HOH A 9 3015 9 HOH HOH . L 7 HOH A 10 3016 10 HOH HOH . L 7 HOH A 11 3017 11 HOH HOH . L 7 HOH A 12 3018 12 HOH HOH . L 7 HOH A 13 3019 13 HOH HOH . L 7 HOH A 14 3020 14 HOH HOH . L 7 HOH A 15 3021 15 HOH HOH . L 7 HOH A 16 3022 16 HOH HOH . L 7 HOH A 17 3023 17 HOH HOH . L 7 HOH A 18 3024 18 HOH HOH . L 7 HOH A 19 3025 19 HOH HOH . L 7 HOH A 20 3026 20 HOH HOH . L 7 HOH A 21 3027 21 HOH HOH . L 7 HOH A 22 3028 22 HOH HOH . L 7 HOH A 23 3029 23 HOH HOH . L 7 HOH A 24 3030 24 HOH HOH . L 7 HOH A 25 3031 25 HOH HOH . L 7 HOH A 26 3032 26 HOH HOH . L 7 HOH A 27 3033 27 HOH HOH . L 7 HOH A 28 3034 28 HOH HOH . L 7 HOH A 29 3035 29 HOH HOH . L 7 HOH A 30 3036 30 HOH HOH . L 7 HOH A 31 3037 31 HOH HOH . L 7 HOH A 32 3038 32 HOH HOH . L 7 HOH A 33 3039 33 HOH HOH . L 7 HOH A 34 3040 34 HOH HOH . L 7 HOH A 35 3041 35 HOH HOH . L 7 HOH A 36 3042 36 HOH HOH . L 7 HOH A 37 3043 37 HOH HOH . L 7 HOH A 38 3044 38 HOH HOH . L 7 HOH A 39 3045 39 HOH HOH . L 7 HOH A 40 3046 40 HOH HOH . L 7 HOH A 41 3047 41 HOH HOH . L 7 HOH A 42 3048 42 HOH HOH . L 7 HOH A 43 3049 43 HOH HOH . L 7 HOH A 44 3050 44 HOH HOH . L 7 HOH A 45 3051 45 HOH HOH . L 7 HOH A 46 3052 46 HOH HOH . L 7 HOH A 47 3053 47 HOH HOH . L 7 HOH A 48 3054 48 HOH HOH . L 7 HOH A 49 3055 49 HOH HOH . L 7 HOH A 50 3056 50 HOH HOH . L 7 HOH A 51 3057 51 HOH HOH . L 7 HOH A 52 3058 52 HOH HOH . L 7 HOH A 53 3059 53 HOH HOH . L 7 HOH A 54 3060 54 HOH HOH . L 7 HOH A 55 3061 55 HOH HOH . L 7 HOH A 56 3062 56 HOH HOH . L 7 HOH A 57 3063 57 HOH HOH . L 7 HOH A 58 3064 58 HOH HOH . L 7 HOH A 59 3065 59 HOH HOH . L 7 HOH A 60 3066 60 HOH HOH . L 7 HOH A 61 3067 61 HOH HOH . L 7 HOH A 62 3068 62 HOH HOH . L 7 HOH A 63 3069 63 HOH HOH . L 7 HOH A 64 3070 64 HOH HOH . L 7 HOH A 65 3071 65 HOH HOH . L 7 HOH A 66 3072 66 HOH HOH . L 7 HOH A 67 3073 67 HOH HOH . L 7 HOH A 68 3074 68 HOH HOH . L 7 HOH A 69 3075 69 HOH HOH . L 7 HOH A 70 3076 70 HOH HOH . L 7 HOH A 71 3077 71 HOH HOH . L 7 HOH A 72 3078 72 HOH HOH . L 7 HOH A 73 3079 73 HOH HOH . L 7 HOH A 74 3080 74 HOH HOH . L 7 HOH A 75 3081 75 HOH HOH . L 7 HOH A 76 3082 76 HOH HOH . L 7 HOH A 77 3083 77 HOH HOH . L 7 HOH A 78 3084 78 HOH HOH . L 7 HOH A 79 3085 79 HOH HOH . L 7 HOH A 80 3086 80 HOH HOH . L 7 HOH A 81 3087 81 HOH HOH . L 7 HOH A 82 3088 82 HOH HOH . L 7 HOH A 83 3089 83 HOH HOH . L 7 HOH A 84 3090 84 HOH HOH . L 7 HOH A 85 3091 85 HOH HOH . L 7 HOH A 86 3092 86 HOH HOH . L 7 HOH A 87 3093 87 HOH HOH . L 7 HOH A 88 3094 88 HOH HOH . L 7 HOH A 89 3095 89 HOH HOH . L 7 HOH A 90 3096 90 HOH HOH . L 7 HOH A 91 3097 91 HOH HOH . L 7 HOH A 92 3098 92 HOH HOH . L 7 HOH A 93 3099 93 HOH HOH . L 7 HOH A 94 3100 94 HOH HOH . L 7 HOH A 95 3101 95 HOH HOH . L 7 HOH A 96 3102 96 HOH HOH . L 7 HOH A 97 3103 97 HOH HOH . L 7 HOH A 98 3104 98 HOH HOH . L 7 HOH A 99 3105 99 HOH HOH . L 7 HOH A 100 3106 100 HOH HOH . L 7 HOH A 101 3107 101 HOH HOH . L 7 HOH A 102 3108 102 HOH HOH . L 7 HOH A 103 3109 103 HOH HOH . L 7 HOH A 104 3110 104 HOH HOH . L 7 HOH A 105 3111 105 HOH HOH . L 7 HOH A 106 3112 106 HOH HOH . L 7 HOH A 107 3113 107 HOH HOH . L 7 HOH A 108 3114 108 HOH HOH . L 7 HOH A 109 3115 109 HOH HOH . L 7 HOH A 110 3116 110 HOH HOH . L 7 HOH A 111 3117 111 HOH HOH . L 7 HOH A 112 3118 112 HOH HOH . L 7 HOH A 113 3119 113 HOH HOH . L 7 HOH A 114 3120 114 HOH HOH . L 7 HOH A 115 3121 115 HOH HOH . L 7 HOH A 116 3122 116 HOH HOH . L 7 HOH A 117 3123 117 HOH HOH . L 7 HOH A 118 3124 118 HOH HOH . L 7 HOH A 119 3125 119 HOH HOH . L 7 HOH A 120 3126 120 HOH HOH . L 7 HOH A 121 3127 121 HOH HOH . L 7 HOH A 122 3128 122 HOH HOH . L 7 HOH A 123 3129 123 HOH HOH . L 7 HOH A 124 3130 124 HOH HOH . L 7 HOH A 125 3131 125 HOH HOH . L 7 HOH A 126 3132 126 HOH HOH . L 7 HOH A 127 3133 127 HOH HOH . L 7 HOH A 128 3134 128 HOH HOH . L 7 HOH A 129 3135 129 HOH HOH . L 7 HOH A 130 3136 130 HOH HOH . L 7 HOH A 131 3137 131 HOH HOH . L 7 HOH A 132 3138 132 HOH HOH . L 7 HOH A 133 3139 133 HOH HOH . L 7 HOH A 134 3140 134 HOH HOH . L 7 HOH A 135 3141 135 HOH HOH . L 7 HOH A 136 3142 136 HOH HOH . L 7 HOH A 137 3143 137 HOH HOH . L 7 HOH A 138 3144 138 HOH HOH . L 7 HOH A 139 3145 139 HOH HOH . L 7 HOH A 140 3146 140 HOH HOH . L 7 HOH A 141 3147 141 HOH HOH . L 7 HOH A 142 3148 142 HOH HOH . L 7 HOH A 143 3149 143 HOH HOH . L 7 HOH A 144 3150 144 HOH HOH . L 7 HOH A 145 3151 145 HOH HOH . L 7 HOH A 146 3152 146 HOH HOH . L 7 HOH A 147 3153 147 HOH HOH . L 7 HOH A 148 3154 148 HOH HOH . L 7 HOH A 149 3155 149 HOH HOH . L 7 HOH A 150 3156 150 HOH HOH . L 7 HOH A 151 3157 151 HOH HOH . L 7 HOH A 152 3158 152 HOH HOH . L 7 HOH A 153 3159 153 HOH HOH . L 7 HOH A 154 3160 154 HOH HOH . L 7 HOH A 155 3161 155 HOH HOH . L 7 HOH A 156 3162 156 HOH HOH . L 7 HOH A 157 3163 157 HOH HOH . L 7 HOH A 158 3164 158 HOH HOH . L 7 HOH A 159 3165 159 HOH HOH . L 7 HOH A 160 3166 160 HOH HOH . L 7 HOH A 161 3167 161 HOH HOH . L 7 HOH A 162 3168 162 HOH HOH . L 7 HOH A 163 3169 163 HOH HOH . L 7 HOH A 164 3170 164 HOH HOH . L 7 HOH A 165 3171 165 HOH HOH . L 7 HOH A 166 3172 166 HOH HOH . L 7 HOH A 167 3173 167 HOH HOH . L 7 HOH A 168 3174 168 HOH HOH . L 7 HOH A 169 3175 169 HOH HOH . L 7 HOH A 170 3176 170 HOH HOH . L 7 HOH A 171 3177 171 HOH HOH . L 7 HOH A 172 3178 172 HOH HOH . L 7 HOH A 173 3179 173 HOH HOH . L 7 HOH A 174 3180 174 HOH HOH . L 7 HOH A 175 3181 175 HOH HOH . L 7 HOH A 176 3182 176 HOH HOH . L 7 HOH A 177 3183 177 HOH HOH . L 7 HOH A 178 3184 178 HOH HOH . L 7 HOH A 179 3185 179 HOH HOH . L 7 HOH A 180 3186 180 HOH HOH . L 7 HOH A 181 3187 181 HOH HOH . L 7 HOH A 182 3188 182 HOH HOH . L 7 HOH A 183 3189 183 HOH HOH . L 7 HOH A 184 3190 184 HOH HOH . L 7 HOH A 185 3191 185 HOH HOH . L 7 HOH A 186 3192 186 HOH HOH . L 7 HOH A 187 3193 187 HOH HOH . L 7 HOH A 188 3194 188 HOH HOH . L 7 HOH A 189 3195 189 HOH HOH . L 7 HOH A 190 3196 190 HOH HOH . L 7 HOH A 191 3197 191 HOH HOH . L 7 HOH A 192 3198 192 HOH HOH . L 7 HOH A 193 3199 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.719 _atom_site.Cartn_y 18.718 _atom_site.Cartn_z 18.722 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 35.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 3005 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 76 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #