data_1V3X # _model_server_result.job_id 7047KypHlM-gBiNK4CGr2A _model_server_result.datetime_utc '2024-12-21 14:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":261}' # _entry.id 1V3X # _exptl.entry_id 1V3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V3X _cell.length_a 56.05 _cell.length_b 71.927 _cell.length_c 78.799 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf6 B SG CYS 3 B CYS 89 1_555 B SG CYS 14 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf7 B SG CYS 10 B CYS 96 1_555 B SG CYS 23 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? disulf ? disulf8 B SG CYS 25 B CYS 111 1_555 B SG CYS 38 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc5 A O TYR 173 A TYR 185 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 A O ASP 174 A ASP 185 1_555 D CA CA . A CA 262 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc7 A O ARG 211 A ARG 222 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 A O LYS 214 A LYS 224 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 C CA CA . A CA 261 1_555 F O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc10 C CA CA . A CA 261 1_555 F O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc11 D CA CA . A CA 262 1_555 F O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc12 D CA CA . A CA 262 1_555 F O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V3X _atom_sites.fract_transf_matrix[1][1] 0.017841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 261 261 CA CA . D 3 CA A 1 262 262 CA CA . E 4 D76 A 1 700 700 D76 D76 . F 5 HOH A 1 701 1 HOH HOH . F 5 HOH A 2 702 2 HOH HOH . F 5 HOH A 3 703 3 HOH HOH . F 5 HOH A 4 704 4 HOH HOH . F 5 HOH A 5 705 5 HOH HOH . F 5 HOH A 6 706 6 HOH HOH . F 5 HOH A 7 707 7 HOH HOH . F 5 HOH A 8 708 8 HOH HOH . F 5 HOH A 9 709 9 HOH HOH . F 5 HOH A 10 710 10 HOH HOH . F 5 HOH A 11 711 11 HOH HOH . F 5 HOH A 12 712 13 HOH HOH . F 5 HOH A 13 713 14 HOH HOH . F 5 HOH A 14 714 15 HOH HOH . F 5 HOH A 15 715 16 HOH HOH . F 5 HOH A 16 716 17 HOH HOH . F 5 HOH A 17 717 19 HOH HOH . F 5 HOH A 18 718 20 HOH HOH . F 5 HOH A 19 719 21 HOH HOH . F 5 HOH A 20 720 22 HOH HOH . F 5 HOH A 21 721 23 HOH HOH . F 5 HOH A 22 722 24 HOH HOH . F 5 HOH A 23 723 25 HOH HOH . F 5 HOH A 24 724 26 HOH HOH . F 5 HOH A 25 725 27 HOH HOH . F 5 HOH A 26 726 29 HOH HOH . F 5 HOH A 27 727 30 HOH HOH . F 5 HOH A 28 728 31 HOH HOH . F 5 HOH A 29 729 33 HOH HOH . F 5 HOH A 30 730 34 HOH HOH . F 5 HOH A 31 731 35 HOH HOH . F 5 HOH A 32 732 37 HOH HOH . F 5 HOH A 33 733 38 HOH HOH . F 5 HOH A 34 734 39 HOH HOH . F 5 HOH A 35 735 40 HOH HOH . F 5 HOH A 36 736 41 HOH HOH . F 5 HOH A 37 737 42 HOH HOH . F 5 HOH A 38 738 43 HOH HOH . F 5 HOH A 39 739 44 HOH HOH . F 5 HOH A 40 740 46 HOH HOH . F 5 HOH A 41 741 47 HOH HOH . F 5 HOH A 42 742 48 HOH HOH . F 5 HOH A 43 743 49 HOH HOH . F 5 HOH A 44 744 52 HOH HOH . F 5 HOH A 45 745 53 HOH HOH . F 5 HOH A 46 746 54 HOH HOH . F 5 HOH A 47 747 58 HOH HOH . F 5 HOH A 48 748 59 HOH HOH . F 5 HOH A 49 749 61 HOH HOH . F 5 HOH A 50 750 62 HOH HOH . F 5 HOH A 51 751 65 HOH HOH . F 5 HOH A 52 752 67 HOH HOH . F 5 HOH A 53 753 68 HOH HOH . F 5 HOH A 54 754 70 HOH HOH . F 5 HOH A 55 755 71 HOH HOH . F 5 HOH A 56 756 72 HOH HOH . F 5 HOH A 57 757 73 HOH HOH . F 5 HOH A 58 758 74 HOH HOH . F 5 HOH A 59 759 76 HOH HOH . F 5 HOH A 60 760 77 HOH HOH . F 5 HOH A 61 761 78 HOH HOH . F 5 HOH A 62 762 79 HOH HOH . F 5 HOH A 63 763 80 HOH HOH . F 5 HOH A 64 764 81 HOH HOH . F 5 HOH A 65 765 82 HOH HOH . F 5 HOH A 66 766 85 HOH HOH . F 5 HOH A 67 767 86 HOH HOH . F 5 HOH A 68 768 87 HOH HOH . F 5 HOH A 69 769 89 HOH HOH . F 5 HOH A 70 770 90 HOH HOH . F 5 HOH A 71 771 91 HOH HOH . F 5 HOH A 72 772 92 HOH HOH . F 5 HOH A 73 773 94 HOH HOH . F 5 HOH A 74 774 96 HOH HOH . F 5 HOH A 75 775 97 HOH HOH . F 5 HOH A 76 776 99 HOH HOH . F 5 HOH A 77 777 100 HOH HOH . F 5 HOH A 78 778 102 HOH HOH . F 5 HOH A 79 779 103 HOH HOH . F 5 HOH A 80 780 104 HOH HOH . F 5 HOH A 81 781 105 HOH HOH . F 5 HOH A 82 782 106 HOH HOH . F 5 HOH A 83 783 108 HOH HOH . F 5 HOH A 84 784 109 HOH HOH . F 5 HOH A 85 785 111 HOH HOH . F 5 HOH A 86 786 112 HOH HOH . F 5 HOH A 87 787 114 HOH HOH . F 5 HOH A 88 788 115 HOH HOH . F 5 HOH A 89 789 117 HOH HOH . F 5 HOH A 90 790 118 HOH HOH . F 5 HOH A 91 791 120 HOH HOH . F 5 HOH A 92 792 121 HOH HOH . F 5 HOH A 93 793 122 HOH HOH . F 5 HOH A 94 794 123 HOH HOH . F 5 HOH A 95 795 125 HOH HOH . F 5 HOH A 96 796 127 HOH HOH . F 5 HOH A 97 797 128 HOH HOH . F 5 HOH A 98 798 129 HOH HOH . F 5 HOH A 99 799 136 HOH HOH . F 5 HOH A 100 800 137 HOH HOH . F 5 HOH A 101 801 138 HOH HOH . F 5 HOH A 102 802 139 HOH HOH . F 5 HOH A 103 803 140 HOH HOH . F 5 HOH A 104 804 142 HOH HOH . F 5 HOH A 105 805 143 HOH HOH . F 5 HOH A 106 806 144 HOH HOH . F 5 HOH A 107 807 145 HOH HOH . F 5 HOH A 108 808 146 HOH HOH . F 5 HOH A 109 809 147 HOH HOH . F 5 HOH A 110 810 148 HOH HOH . F 5 HOH A 111 811 149 HOH HOH . F 5 HOH A 112 812 150 HOH HOH . F 5 HOH A 113 813 151 HOH HOH . F 5 HOH A 114 814 152 HOH HOH . F 5 HOH A 115 815 155 HOH HOH . F 5 HOH A 116 816 156 HOH HOH . F 5 HOH A 117 817 158 HOH HOH . F 5 HOH A 118 818 160 HOH HOH . F 5 HOH A 119 819 162 HOH HOH . F 5 HOH A 120 820 163 HOH HOH . F 5 HOH A 121 821 301 HOH HOH . F 5 HOH A 122 822 302 HOH HOH . F 5 HOH A 123 823 303 HOH HOH . G 5 HOH B 1 139 12 HOH HOH . G 5 HOH B 2 140 18 HOH HOH . G 5 HOH B 3 141 28 HOH HOH . G 5 HOH B 4 142 32 HOH HOH . G 5 HOH B 5 143 36 HOH HOH . G 5 HOH B 6 144 45 HOH HOH . G 5 HOH B 7 145 50 HOH HOH . G 5 HOH B 8 146 51 HOH HOH . G 5 HOH B 9 147 55 HOH HOH . G 5 HOH B 10 148 56 HOH HOH . G 5 HOH B 11 149 57 HOH HOH . G 5 HOH B 12 150 60 HOH HOH . G 5 HOH B 13 151 63 HOH HOH . G 5 HOH B 14 152 64 HOH HOH . G 5 HOH B 15 153 66 HOH HOH . G 5 HOH B 16 154 69 HOH HOH . G 5 HOH B 17 155 75 HOH HOH . G 5 HOH B 18 156 83 HOH HOH . G 5 HOH B 19 157 84 HOH HOH . G 5 HOH B 20 158 88 HOH HOH . G 5 HOH B 21 159 93 HOH HOH . G 5 HOH B 22 160 95 HOH HOH . G 5 HOH B 23 161 98 HOH HOH . G 5 HOH B 24 162 101 HOH HOH . G 5 HOH B 25 163 110 HOH HOH . G 5 HOH B 26 164 113 HOH HOH . G 5 HOH B 27 165 116 HOH HOH . G 5 HOH B 28 166 119 HOH HOH . G 5 HOH B 29 167 124 HOH HOH . G 5 HOH B 30 168 130 HOH HOH . G 5 HOH B 31 169 131 HOH HOH . G 5 HOH B 32 170 133 HOH HOH . G 5 HOH B 33 171 134 HOH HOH . G 5 HOH B 34 172 135 HOH HOH . G 5 HOH B 35 173 141 HOH HOH . G 5 HOH B 36 174 153 HOH HOH . G 5 HOH B 37 175 154 HOH HOH . G 5 HOH B 38 176 300 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.323 _atom_site.Cartn_y 31.204 _atom_site.Cartn_z 28.984 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 261 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #