data_1V45 # _model_server_result.job_id SAHsw6QW0d14zgSJ98GSRQ _model_server_result.datetime_utc '2024-11-29 02:12:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":290}' # _entry.id 1V45 # _exptl.entry_id 1V45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(3-DEOXY-BETA-D-RIBOFURANOSYL)GUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V45 _cell.length_a 141.32 _cell.length_b 141.32 _cell.length_c 162.62 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 211.98 122.38671 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 244.77342 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id 3DG _chem_comp.mon_nstd_flag . _chem_comp.name 9-(3-DEOXY-BETA-D-RIBOFURANOSYL)GUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-DEOXYGUANOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C1' 3DG sing 1 n n N9 C8 3DG sing 2 n y N9 C4 3DG sing 3 n y C1' C2' 3DG sing 4 n n C1' O4' 3DG sing 5 n n C1' H1' 3DG sing 6 n n C2' C3' 3DG sing 7 n n C2' O2' 3DG sing 8 n n C2' H2' 3DG sing 9 n n C3' C4' 3DG sing 10 n n C3' "H3'1" 3DG sing 11 n n C3' "H3'2" 3DG sing 12 n n C4' O4' 3DG sing 13 n n C4' C5' 3DG sing 14 n n C4' H4' 3DG sing 15 n n C5' O5' 3DG sing 16 n n C5' "H5'1" 3DG sing 17 n n C5' "H5'2" 3DG sing 18 n n O5' H5' 3DG sing 19 n n O2' H1 3DG sing 20 n n C8 N7 3DG doub 21 n y C8 H8 3DG sing 22 n n N7 C5 3DG sing 23 n y C5 C6 3DG sing 24 n n C5 C4 3DG doub 25 n y C6 O6 3DG doub 26 n n C6 N1 3DG sing 27 n n N1 C2 3DG sing 28 n n N1 HN1 3DG sing 29 n n C2 N2 3DG sing 30 n n C2 N3 3DG doub 31 n n N2 HN21 3DG sing 32 n n N2 HN22 3DG sing 33 n n N3 C4 3DG sing 34 n n # _atom_sites.entry_id 1V45 _atom_sites.fract_transf_matrix[1][1] 0.007076 _atom_sites.fract_transf_matrix[1][2] 0.004085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 E 1 291 291 SO4 SO4 . C 2 SO4 E 1 292 292 SO4 SO4 . D 2 SO4 E 1 293 293 SO4 SO4 . E 3 3DG E 1 290 290 3DG 3DG . F 4 HOH E 1 294 294 HOH WAT . F 4 HOH E 2 295 295 HOH WAT . F 4 HOH E 3 296 296 HOH WAT . F 4 HOH E 4 297 297 HOH WAT . F 4 HOH E 5 298 298 HOH WAT . F 4 HOH E 6 299 299 HOH WAT . F 4 HOH E 7 300 300 HOH WAT . F 4 HOH E 8 301 301 HOH WAT . F 4 HOH E 9 302 302 HOH WAT . F 4 HOH E 10 303 303 HOH WAT . F 4 HOH E 11 304 304 HOH WAT . F 4 HOH E 12 305 305 HOH WAT . F 4 HOH E 13 306 306 HOH WAT . F 4 HOH E 14 307 307 HOH WAT . F 4 HOH E 15 308 308 HOH WAT . F 4 HOH E 16 309 309 HOH WAT . F 4 HOH E 17 310 310 HOH WAT . F 4 HOH E 18 311 311 HOH WAT . F 4 HOH E 19 312 312 HOH WAT . F 4 HOH E 20 313 313 HOH WAT . F 4 HOH E 21 314 314 HOH WAT . F 4 HOH E 22 315 315 HOH WAT . F 4 HOH E 23 316 316 HOH WAT . F 4 HOH E 24 317 317 HOH WAT . F 4 HOH E 25 318 318 HOH WAT . F 4 HOH E 26 319 319 HOH WAT . F 4 HOH E 27 320 320 HOH WAT . F 4 HOH E 28 321 321 HOH WAT . F 4 HOH E 29 322 322 HOH WAT . F 4 HOH E 30 323 323 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 3DG . . . E 3 53.233 129.076 55.619 1 34.09 ? N9 3DG 290 E 1 HETATM 2 C C1' 3DG . . . E 3 52.802 128.394 56.889 1 44.38 ? C1' 3DG 290 E 1 HETATM 3 C C2' 3DG . . . E 3 53.813 127.833 57.974 1 45.54 ? C2' 3DG 290 E 1 HETATM 4 C C3' 3DG . . . E 3 53.437 128.553 59.373 1 45.73 ? C3' 3DG 290 E 1 HETATM 5 C C4' 3DG . . . E 3 52.49 129.694 58.89 1 47.04 ? C4' 3DG 290 E 1 HETATM 6 O O4' 3DG . . . E 3 51.923 129.314 57.602 1 49.23 ? O4' 3DG 290 E 1 HETATM 7 C C5' 3DG . . . E 3 53.147 131.05 58.636 1 47.07 ? C5' 3DG 290 E 1 HETATM 8 O O5' 3DG . . . E 3 52.082 131.925 58.15 1 42.82 ? O5' 3DG 290 E 1 HETATM 9 O O2' 3DG . . . E 3 53.584 126.393 58.115 1 44.12 ? O2' 3DG 290 E 1 HETATM 10 C C8 3DG . . . E 3 52.268 129.617 54.781 1 31.59 ? C8 3DG 290 E 1 HETATM 11 N N7 3DG . . . E 3 52.924 130.175 53.725 1 27.18 ? N7 3DG 290 E 1 HETATM 12 C C5 3DG . . . E 3 54.258 129.966 53.966 1 25.14 ? C5 3DG 290 E 1 HETATM 13 C C6 3DG . . . E 3 55.315 130.367 53.174 1 27.74 ? C6 3DG 290 E 1 HETATM 14 O O6 3DG . . . E 3 55.226 131.026 52.099 1 30.93 ? O6 3DG 290 E 1 HETATM 15 N N1 3DG . . . E 3 56.556 129.969 53.717 1 23.92 ? N1 3DG 290 E 1 HETATM 16 C C2 3DG . . . E 3 56.7 129.258 54.895 1 23.88 ? C2 3DG 290 E 1 HETATM 17 N N2 3DG . . . E 3 57.946 128.97 55.308 1 24.96 ? N2 3DG 290 E 1 HETATM 18 N N3 3DG . . . E 3 55.681 128.872 55.656 1 24.21 ? N3 3DG 290 E 1 HETATM 19 C C4 3DG . . . E 3 54.499 129.257 55.132 1 25.68 ? C4 3DG 290 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #