data_1V47 # _model_server_result.job_id Yc4wAMLxFs_huXDXrEIiGQ _model_server_result.datetime_utc '2024-10-19 05:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 1V47 # _exptl.entry_id 1V47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.43 _cell.angle_gamma 90 _cell.entry_id 1V47 _cell.length_a 68.858 _cell.length_b 61.254 _cell.length_c 128.665 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 96 A GLU 96 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc2 A OE2 GLU 219 A GLU 219 1_555 G NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 A SG CYS 294 A CYS 294 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A SG CYS 297 A CYS 297 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc5 A SG CYS 306 A CYS 306 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 A ND1 HIS 310 A HIS 310 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 B SG CYS 294 B CYS 294 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 B SG CYS 297 B CYS 297 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 B SG CYS 306 B CYS 306 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 B ND1 HIS 310 B HIS 310 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V47 _atom_sites.fract_transf_matrix[1][1] 0.014523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00138 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 CL A 1 602 1 CL CL1 . E 4 NA A 1 603 3 NA NA1 . F 4 NA A 1 604 19 NA NA1 . G 4 NA A 1 605 57 NA NA1 . H 3 CL A 1 606 145 CL CL1 . I 3 CL A 1 607 160 CL CL1 . J 3 CL A 1 608 162 CL CL1 . K 5 ADX A 1 564 564 ADX ADX . L 2 ZN B 1 602 602 ZN ZN . M 3 CL B 1 603 126 CL CL1 . N 4 NA B 1 604 132 NA NA1 . O 5 ADX B 1 574 574 ADX ADX . P 6 HOH A 1 609 2 HOH TIP . P 6 HOH A 2 610 4 HOH TIP . P 6 HOH A 3 611 5 HOH TIP . P 6 HOH A 4 612 6 HOH TIP . P 6 HOH A 5 613 7 HOH TIP . P 6 HOH A 6 614 8 HOH TIP . P 6 HOH A 7 615 9 HOH TIP . P 6 HOH A 8 616 10 HOH TIP . P 6 HOH A 9 617 11 HOH TIP . P 6 HOH A 10 618 12 HOH TIP . P 6 HOH A 11 619 13 HOH TIP . P 6 HOH A 12 620 14 HOH TIP . P 6 HOH A 13 621 15 HOH TIP . P 6 HOH A 14 622 16 HOH TIP . P 6 HOH A 15 623 17 HOH TIP . P 6 HOH A 16 624 18 HOH TIP . P 6 HOH A 17 625 20 HOH TIP . P 6 HOH A 18 626 21 HOH TIP . P 6 HOH A 19 627 22 HOH TIP . P 6 HOH A 20 628 23 HOH TIP . P 6 HOH A 21 629 24 HOH TIP . P 6 HOH A 22 630 25 HOH TIP . P 6 HOH A 23 631 26 HOH TIP . P 6 HOH A 24 632 27 HOH TIP . P 6 HOH A 25 633 28 HOH TIP . P 6 HOH A 26 634 29 HOH TIP . P 6 HOH A 27 635 30 HOH TIP . P 6 HOH A 28 636 31 HOH TIP . P 6 HOH A 29 637 32 HOH TIP . P 6 HOH A 30 638 33 HOH TIP . P 6 HOH A 31 639 34 HOH TIP . P 6 HOH A 32 640 35 HOH TIP . P 6 HOH A 33 641 36 HOH TIP . P 6 HOH A 34 642 37 HOH TIP . P 6 HOH A 35 643 38 HOH TIP . P 6 HOH A 36 644 40 HOH TIP . P 6 HOH A 37 645 41 HOH TIP . P 6 HOH A 38 646 42 HOH TIP . P 6 HOH A 39 647 43 HOH TIP . P 6 HOH A 40 648 44 HOH TIP . P 6 HOH A 41 649 46 HOH TIP . P 6 HOH A 42 650 47 HOH TIP . P 6 HOH A 43 651 48 HOH TIP . P 6 HOH A 44 652 50 HOH TIP . P 6 HOH A 45 653 52 HOH TIP . P 6 HOH A 46 654 53 HOH TIP . P 6 HOH A 47 655 54 HOH TIP . P 6 HOH A 48 656 55 HOH TIP . P 6 HOH A 49 657 56 HOH TIP . P 6 HOH A 50 658 58 HOH TIP . P 6 HOH A 51 659 59 HOH TIP . P 6 HOH A 52 660 60 HOH TIP . P 6 HOH A 53 661 61 HOH TIP . P 6 HOH A 54 662 62 HOH TIP . P 6 HOH A 55 663 64 HOH TIP . P 6 HOH A 56 664 65 HOH TIP . P 6 HOH A 57 665 66 HOH TIP . P 6 HOH A 58 666 67 HOH TIP . P 6 HOH A 59 667 68 HOH TIP . P 6 HOH A 60 668 69 HOH TIP . P 6 HOH A 61 669 71 HOH TIP . P 6 HOH A 62 670 72 HOH TIP . P 6 HOH A 63 671 73 HOH TIP . P 6 HOH A 64 672 74 HOH TIP . P 6 HOH A 65 673 76 HOH TIP . P 6 HOH A 66 674 77 HOH TIP . P 6 HOH A 67 675 79 HOH TIP . P 6 HOH A 68 676 80 HOH TIP . P 6 HOH A 69 677 81 HOH TIP . P 6 HOH A 70 678 82 HOH TIP . P 6 HOH A 71 679 83 HOH TIP . P 6 HOH A 72 680 84 HOH TIP . P 6 HOH A 73 681 85 HOH TIP . P 6 HOH A 74 682 87 HOH TIP . P 6 HOH A 75 683 88 HOH TIP . P 6 HOH A 76 684 89 HOH TIP . P 6 HOH A 77 685 90 HOH TIP . P 6 HOH A 78 686 91 HOH TIP . P 6 HOH A 79 687 93 HOH TIP . P 6 HOH A 80 688 95 HOH TIP . P 6 HOH A 81 689 96 HOH TIP . P 6 HOH A 82 690 97 HOH TIP . P 6 HOH A 83 691 98 HOH TIP . P 6 HOH A 84 692 99 HOH TIP . P 6 HOH A 85 693 100 HOH TIP . P 6 HOH A 86 694 101 HOH TIP . P 6 HOH A 87 695 104 HOH TIP . P 6 HOH A 88 696 105 HOH TIP . P 6 HOH A 89 697 106 HOH TIP . P 6 HOH A 90 698 107 HOH TIP . P 6 HOH A 91 699 108 HOH TIP . P 6 HOH A 92 700 109 HOH TIP . P 6 HOH A 93 701 112 HOH TIP . P 6 HOH A 94 702 113 HOH TIP . P 6 HOH A 95 703 114 HOH TIP . P 6 HOH A 96 704 115 HOH TIP . P 6 HOH A 97 705 116 HOH TIP . P 6 HOH A 98 706 117 HOH TIP . P 6 HOH A 99 707 118 HOH TIP . P 6 HOH A 100 708 119 HOH TIP . P 6 HOH A 101 709 122 HOH TIP . P 6 HOH A 102 710 123 HOH TIP . P 6 HOH A 103 711 124 HOH TIP . P 6 HOH A 104 712 125 HOH TIP . P 6 HOH A 105 713 128 HOH TIP . P 6 HOH A 106 714 130 HOH TIP . P 6 HOH A 107 715 131 HOH TIP . P 6 HOH A 108 716 134 HOH TIP . P 6 HOH A 109 717 135 HOH TIP . P 6 HOH A 110 718 137 HOH TIP . P 6 HOH A 111 719 138 HOH TIP . P 6 HOH A 112 720 139 HOH TIP . P 6 HOH A 113 721 141 HOH TIP . P 6 HOH A 114 722 142 HOH TIP . P 6 HOH A 115 723 143 HOH TIP . P 6 HOH A 116 724 144 HOH TIP . P 6 HOH A 117 725 146 HOH TIP . P 6 HOH A 118 726 147 HOH TIP . P 6 HOH A 119 727 148 HOH TIP . P 6 HOH A 120 728 149 HOH TIP . P 6 HOH A 121 729 152 HOH TIP . P 6 HOH A 122 730 153 HOH TIP . P 6 HOH A 123 731 154 HOH TIP . P 6 HOH A 124 732 158 HOH TIP . P 6 HOH A 125 733 159 HOH TIP . P 6 HOH A 126 734 161 HOH TIP . P 6 HOH A 127 735 163 HOH TIP . P 6 HOH A 128 736 167 HOH TIP . P 6 HOH A 129 737 168 HOH TIP . P 6 HOH A 130 738 170 HOH TIP . P 6 HOH A 131 739 172 HOH TIP . P 6 HOH A 132 740 175 HOH TIP . P 6 HOH A 133 741 176 HOH TIP . P 6 HOH A 134 742 177 HOH TIP . P 6 HOH A 135 743 178 HOH TIP . Q 6 HOH B 1 605 39 HOH TIP . Q 6 HOH B 2 606 45 HOH TIP . Q 6 HOH B 3 607 49 HOH TIP . Q 6 HOH B 4 608 51 HOH TIP . Q 6 HOH B 5 609 63 HOH TIP . Q 6 HOH B 6 610 70 HOH TIP . Q 6 HOH B 7 611 75 HOH TIP . Q 6 HOH B 8 612 86 HOH TIP . Q 6 HOH B 9 613 92 HOH TIP . Q 6 HOH B 10 614 94 HOH TIP . Q 6 HOH B 11 615 102 HOH TIP . Q 6 HOH B 12 616 103 HOH TIP . Q 6 HOH B 13 617 110 HOH TIP . Q 6 HOH B 14 618 111 HOH TIP . Q 6 HOH B 15 619 120 HOH TIP . Q 6 HOH B 16 620 121 HOH TIP . Q 6 HOH B 17 621 129 HOH TIP . Q 6 HOH B 18 622 133 HOH TIP . Q 6 HOH B 19 623 136 HOH TIP . Q 6 HOH B 20 624 140 HOH TIP . Q 6 HOH B 21 625 150 HOH TIP . Q 6 HOH B 22 626 155 HOH TIP . Q 6 HOH B 23 627 156 HOH TIP . Q 6 HOH B 24 628 164 HOH TIP . Q 6 HOH B 25 629 165 HOH TIP . Q 6 HOH B 26 630 166 HOH TIP . Q 6 HOH B 27 631 169 HOH TIP . Q 6 HOH B 28 632 171 HOH TIP . Q 6 HOH B 29 633 173 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -20.293 _atom_site.Cartn_y 31.502 _atom_site.Cartn_z 172.417 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 605 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #