data_1V5Y
#
_model_server_result.job_id            Gkkrr7n4vUUMuVmogIc8ig 
_model_server_result.datetime_utc      '2024-11-15 14:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1454}' 
#
_entry.id    1V5Y 
#
_exptl.entry_id    1V5Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100 
_cell.angle_gamma         90 
_cell.entry_id            1V5Y 
_cell.length_a            101.6 
_cell.length_b            63.3 
_cell.length_c            74.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 102 n n 
N1 C10 FMN doub 103 n n 
C2 O2 FMN doub 104 n n 
C2 N3 FMN sing 105 n n 
N3 C4 FMN sing 106 n n 
N3 HN3 FMN sing 107 n n 
C4 O4 FMN doub 108 n n 
C4 C4A FMN sing 109 n n 
C4A N5 FMN doub 110 n n 
C4A C10 FMN sing 111 n n 
N5 C5A FMN sing 112 n n 
C5A C6 FMN doub 113 n y 
C5A C9A FMN sing 114 n y 
C6 C7 FMN sing 115 n y 
C6 H6 FMN sing 116 n n 
C7 C7M FMN sing 117 n n 
C7 C8 FMN doub 118 n y 
C7M HM71 FMN sing 119 n n 
C7M HM72 FMN sing 120 n n 
C7M HM73 FMN sing 121 n n 
C8 C8M FMN sing 122 n n 
C8 C9 FMN sing 123 n y 
C8M HM81 FMN sing 124 n n 
C8M HM82 FMN sing 125 n n 
C8M HM83 FMN sing 126 n n 
C9 C9A FMN doub 127 n y 
C9 H9 FMN sing 128 n n 
C9A N10 FMN sing 129 n n 
N10 C10 FMN sing 130 n n 
N10 C1' FMN sing 131 n n 
C1' C2' FMN sing 132 n n 
C1' "H1'1" FMN sing 133 n n 
C1' "H1'2" FMN sing 134 n n 
C2' O2' FMN sing 135 n n 
C2' C3' FMN sing 136 n n 
C2' H2' FMN sing 137 n n 
O2' HO2' FMN sing 138 n n 
C3' O3' FMN sing 139 n n 
C3' C4' FMN sing 140 n n 
C3' H3' FMN sing 141 n n 
O3' HO3' FMN sing 142 n n 
C4' O4' FMN sing 143 n n 
C4' C5' FMN sing 144 n n 
C4' H4' FMN sing 145 n n 
O4' HO4' FMN sing 146 n n 
C5' O5' FMN sing 147 n n 
C5' "H5'1" FMN sing 148 n n 
C5' "H5'2" FMN sing 149 n n 
O5' P FMN sing 150 n n 
P O1P FMN doub 151 n n 
P O2P FMN sing 152 n n 
P O3P FMN sing 153 n n 
O2P HOP2 FMN sing 154 n n 
O3P HOP3 FMN sing 155 n n 
#
_atom_sites.entry_id                     1V5Y 
_atom_sites.fract_transf_matrix[1][1]    0.009843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001736 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 1454 454 FMN FMN . 
D 3 4HC A 1 1455 201 4HC U01 . 
E 2 FMN B 1 454 454 FMN FMN . 
F 3 4HC B 1 1201 201 4HC U01 . 
G 4 HOH A 1 1456 1 HOH HOH . 
G 4 HOH A 2 1457 3 HOH HOH . 
G 4 HOH A 3 1458 4 HOH HOH . 
G 4 HOH A 4 1459 5 HOH HOH . 
G 4 HOH A 5 1460 6 HOH HOH . 
G 4 HOH A 6 1461 7 HOH HOH . 
G 4 HOH A 7 1462 8 HOH HOH . 
G 4 HOH A 8 1463 11 HOH HOH . 
G 4 HOH A 9 1464 12 HOH HOH . 
G 4 HOH A 10 1465 13 HOH HOH . 
G 4 HOH A 11 1466 16 HOH HOH . 
G 4 HOH A 12 1467 17 HOH HOH . 
G 4 HOH A 13 1468 18 HOH HOH . 
G 4 HOH A 14 1469 19 HOH HOH . 
G 4 HOH A 15 1470 20 HOH HOH . 
G 4 HOH A 16 1471 27 HOH HOH . 
G 4 HOH A 17 1472 33 HOH HOH . 
G 4 HOH A 18 1473 34 HOH HOH . 
G 4 HOH A 19 1474 35 HOH HOH . 
G 4 HOH A 20 1475 36 HOH HOH . 
G 4 HOH A 21 1476 37 HOH HOH . 
G 4 HOH A 22 1477 38 HOH HOH . 
G 4 HOH A 23 1478 40 HOH HOH . 
G 4 HOH A 24 1479 41 HOH HOH . 
G 4 HOH A 25 1480 43 HOH HOH . 
G 4 HOH A 26 1481 45 HOH HOH . 
G 4 HOH A 27 1482 46 HOH HOH . 
G 4 HOH A 28 1483 47 HOH HOH . 
G 4 HOH A 29 1484 48 HOH HOH . 
G 4 HOH A 30 1485 49 HOH HOH . 
G 4 HOH A 31 1486 54 HOH HOH . 
G 4 HOH A 32 1487 55 HOH HOH . 
G 4 HOH A 33 1488 56 HOH HOH . 
G 4 HOH A 34 1489 58 HOH HOH . 
G 4 HOH A 35 1490 59 HOH HOH . 
G 4 HOH A 36 1491 60 HOH HOH . 
G 4 HOH A 37 1492 61 HOH HOH . 
G 4 HOH A 38 1493 66 HOH HOH . 
G 4 HOH A 39 1494 68 HOH HOH . 
G 4 HOH A 40 1495 69 HOH HOH . 
G 4 HOH A 41 1496 70 HOH HOH . 
G 4 HOH A 42 1497 75 HOH HOH . 
G 4 HOH A 43 1498 76 HOH HOH . 
G 4 HOH A 44 1499 77 HOH HOH . 
G 4 HOH A 45 1500 78 HOH HOH . 
G 4 HOH A 46 1501 81 HOH HOH . 
G 4 HOH A 47 1502 82 HOH HOH . 
G 4 HOH A 48 1503 83 HOH HOH . 
G 4 HOH A 49 1504 88 HOH HOH . 
G 4 HOH A 50 1505 89 HOH HOH . 
G 4 HOH A 51 1506 94 HOH HOH . 
G 4 HOH A 52 1507 95 HOH HOH . 
G 4 HOH A 53 1508 96 HOH HOH . 
G 4 HOH A 54 1509 99 HOH HOH . 
G 4 HOH A 55 1510 100 HOH HOH . 
G 4 HOH A 56 1511 101 HOH HOH . 
G 4 HOH A 57 1512 103 HOH HOH . 
G 4 HOH A 58 1513 107 HOH HOH . 
G 4 HOH A 59 1514 108 HOH HOH . 
G 4 HOH A 60 1515 110 HOH HOH . 
G 4 HOH A 61 1516 116 HOH HOH . 
G 4 HOH A 62 1517 118 HOH HOH . 
G 4 HOH A 63 1518 121 HOH HOH . 
G 4 HOH A 64 1519 123 HOH HOH . 
G 4 HOH A 65 1520 124 HOH HOH . 
G 4 HOH A 66 1521 126 HOH HOH . 
G 4 HOH A 67 1522 127 HOH HOH . 
G 4 HOH A 68 1523 128 HOH HOH . 
G 4 HOH A 69 1524 131 HOH HOH . 
G 4 HOH A 70 1525 132 HOH HOH . 
G 4 HOH A 71 1526 136 HOH HOH . 
G 4 HOH A 72 1527 137 HOH HOH . 
G 4 HOH A 73 1528 139 HOH HOH . 
G 4 HOH A 74 1529 140 HOH HOH . 
G 4 HOH A 75 1530 141 HOH HOH . 
G 4 HOH A 76 1531 149 HOH HOH . 
G 4 HOH A 77 1532 152 HOH HOH . 
G 4 HOH A 78 1533 155 HOH HOH . 
G 4 HOH A 79 1534 156 HOH HOH . 
G 4 HOH A 80 1535 157 HOH HOH . 
G 4 HOH A 81 1536 162 HOH HOH . 
G 4 HOH A 82 1537 163 HOH HOH . 
H 4 HOH B 1 1202 2 HOH HOH . 
H 4 HOH B 2 1203 9 HOH HOH . 
H 4 HOH B 3 1204 10 HOH HOH . 
H 4 HOH B 4 1205 14 HOH HOH . 
H 4 HOH B 5 1206 15 HOH HOH . 
H 4 HOH B 6 1207 21 HOH HOH . 
H 4 HOH B 7 1208 22 HOH HOH . 
H 4 HOH B 8 1209 23 HOH HOH . 
H 4 HOH B 9 1210 24 HOH HOH . 
H 4 HOH B 10 1211 25 HOH HOH . 
H 4 HOH B 11 1212 26 HOH HOH . 
H 4 HOH B 12 1213 28 HOH HOH . 
H 4 HOH B 13 1214 29 HOH HOH . 
H 4 HOH B 14 1215 30 HOH HOH . 
H 4 HOH B 15 1216 31 HOH HOH . 
H 4 HOH B 16 1217 32 HOH HOH . 
H 4 HOH B 17 1218 39 HOH HOH . 
H 4 HOH B 18 1219 42 HOH HOH . 
H 4 HOH B 19 1220 44 HOH HOH . 
H 4 HOH B 20 1221 50 HOH HOH . 
H 4 HOH B 21 1222 51 HOH HOH . 
H 4 HOH B 22 1223 52 HOH HOH . 
H 4 HOH B 23 1224 53 HOH HOH . 
H 4 HOH B 24 1225 57 HOH HOH . 
H 4 HOH B 25 1226 62 HOH HOH . 
H 4 HOH B 26 1227 63 HOH HOH . 
H 4 HOH B 27 1228 64 HOH HOH . 
H 4 HOH B 28 1229 65 HOH HOH . 
H 4 HOH B 29 1230 67 HOH HOH . 
H 4 HOH B 30 1231 71 HOH HOH . 
H 4 HOH B 31 1232 72 HOH HOH . 
H 4 HOH B 32 1233 73 HOH HOH . 
H 4 HOH B 33 1234 74 HOH HOH . 
H 4 HOH B 34 1235 79 HOH HOH . 
H 4 HOH B 35 1236 80 HOH HOH . 
H 4 HOH B 36 1237 84 HOH HOH . 
H 4 HOH B 37 1238 85 HOH HOH . 
H 4 HOH B 38 1239 86 HOH HOH . 
H 4 HOH B 39 1240 87 HOH HOH . 
H 4 HOH B 40 1241 90 HOH HOH . 
H 4 HOH B 41 1242 91 HOH HOH . 
H 4 HOH B 42 1243 92 HOH HOH . 
H 4 HOH B 43 1244 93 HOH HOH . 
H 4 HOH B 44 1245 97 HOH HOH . 
H 4 HOH B 45 1246 98 HOH HOH . 
H 4 HOH B 46 1247 102 HOH HOH . 
H 4 HOH B 47 1248 104 HOH HOH . 
H 4 HOH B 48 1249 105 HOH HOH . 
H 4 HOH B 49 1250 106 HOH HOH . 
H 4 HOH B 50 1251 109 HOH HOH . 
H 4 HOH B 51 1252 111 HOH HOH . 
H 4 HOH B 52 1253 112 HOH HOH . 
H 4 HOH B 53 1254 113 HOH HOH . 
H 4 HOH B 54 1255 114 HOH HOH . 
H 4 HOH B 55 1256 115 HOH HOH . 
H 4 HOH B 56 1257 117 HOH HOH . 
H 4 HOH B 57 1258 119 HOH HOH . 
H 4 HOH B 58 1259 120 HOH HOH . 
H 4 HOH B 59 1260 122 HOH HOH . 
H 4 HOH B 60 1261 125 HOH HOH . 
H 4 HOH B 61 1262 129 HOH HOH . 
H 4 HOH B 62 1263 130 HOH HOH . 
H 4 HOH B 63 1264 133 HOH HOH . 
H 4 HOH B 64 1265 134 HOH HOH . 
H 4 HOH B 65 1266 135 HOH HOH . 
H 4 HOH B 66 1267 138 HOH HOH . 
H 4 HOH B 67 1268 142 HOH HOH . 
H 4 HOH B 68 1269 143 HOH HOH . 
H 4 HOH B 69 1270 144 HOH HOH . 
H 4 HOH B 70 1271 145 HOH HOH . 
H 4 HOH B 71 1272 146 HOH HOH . 
H 4 HOH B 72 1273 147 HOH HOH . 
H 4 HOH B 73 1274 148 HOH HOH . 
H 4 HOH B 74 1275 150 HOH HOH . 
H 4 HOH B 75 1276 151 HOH HOH . 
H 4 HOH B 76 1277 153 HOH HOH . 
H 4 HOH B 77 1278 154 HOH HOH . 
H 4 HOH B 78 1279 158 HOH HOH . 
H 4 HOH B 79 1280 159 HOH HOH . 
H 4 HOH B 80 1281 160 HOH HOH . 
H 4 HOH B 81 1282 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 2 60.568 31.14 18.75 1 9.85 ? N1 FMN 1454 A 1 
HETATM 2 C C2 FMN . . . C 2 59.858 32.018 19.535 1 12 ? C2 FMN 1454 A 1 
HETATM 3 O O2 FMN . . . C 2 59.527 33.116 19.123 1 12.23 ? O2 FMN 1454 A 1 
HETATM 4 N N3 FMN . . . C 2 60.039 31.782 20.9 1 10.29 ? N3 FMN 1454 A 1 
HETATM 5 C C4 FMN . . . C 2 60.572 30.641 21.46 1 7.61 ? C4 FMN 1454 A 1 
HETATM 6 O O4 FMN . . . C 2 60.554 30.588 22.697 1 11.58 ? O4 FMN 1454 A 1 
HETATM 7 C C4A FMN . . . C 2 61.158 29.722 20.512 1 6.72 ? C4A FMN 1454 A 1 
HETATM 8 N N5 FMN . . . C 2 61.638 28.54 21.017 1 7.08 ? N5 FMN 1454 A 1 
HETATM 9 C C5A FMN . . . C 2 62.016 27.534 20.207 1 6.03 ? C5A FMN 1454 A 1 
HETATM 10 C C6 FMN . . . C 2 62.238 26.301 20.72 1 6.43 ? C6 FMN 1454 A 1 
HETATM 11 C C7 FMN . . . C 2 62.493 25.258 19.864 1 7.81 ? C7 FMN 1454 A 1 
HETATM 12 C C7M FMN . . . C 2 62.839 23.857 20.378 1 8.96 ? C7M FMN 1454 A 1 
HETATM 13 C C8 FMN . . . C 2 62.469 25.468 18.471 1 10.21 ? C8 FMN 1454 A 1 
HETATM 14 C C8M FMN . . . C 2 62.546 24.309 17.454 1 10.36 ? C8M FMN 1454 A 1 
HETATM 15 C C9 FMN . . . C 2 62.199 26.695 17.972 1 7.39 ? C9 FMN 1454 A 1 
HETATM 16 C C9A FMN . . . C 2 61.966 27.732 18.82 1 6.35 ? C9A FMN 1454 A 1 
HETATM 17 N N10 FMN . . . C 2 61.6 28.946 18.321 1 9.22 ? N10 FMN 1454 A 1 
HETATM 18 C C10 FMN . . . C 2 61.115 29.921 19.129 1 8.32 ? C10 FMN 1454 A 1 
HETATM 19 C C1' FMN . . . C 2 61.635 29.233 16.966 1 10.79 ? C1' FMN 1454 A 1 
HETATM 20 C C2' FMN . . . C 2 63.06 29.21 16.291 1 10.47 ? C2' FMN 1454 A 1 
HETATM 21 O O2' FMN . . . C 2 63.697 30.459 16.52 1 7.58 ? O2' FMN 1454 A 1 
HETATM 22 C C3' FMN . . . C 2 62.901 28.883 14.769 1 6.3 ? C3' FMN 1454 A 1 
HETATM 23 O O3' FMN . . . C 2 62.373 27.58 14.647 1 8.82 ? O3' FMN 1454 A 1 
HETATM 24 C C4' FMN . . . C 2 64.304 28.91 14.022 1 10.45 ? C4' FMN 1454 A 1 
HETATM 25 O O4' FMN . . . C 2 64.74 30.304 14.056 1 9.94 ? O4' FMN 1454 A 1 
HETATM 26 C C5' FMN . . . C 2 64.12 28.523 12.558 1 8.7 ? C5' FMN 1454 A 1 
HETATM 27 O O5' FMN . . . C 2 63.109 29.362 11.933 1 11.25 ? O5' FMN 1454 A 1 
HETATM 28 P P FMN . . . C 2 61.676 28.899 11.322 1 10.54 ? P FMN 1454 A 1 
HETATM 29 O O1P FMN . . . C 2 61.161 30.261 11.054 1 7.84 ? O1P FMN 1454 A 1 
HETATM 30 O O2P FMN . . . C 2 61.183 28.128 12.499 1 11.65 ? O2P FMN 1454 A 1 
HETATM 31 O O3P FMN . . . C 2 62.186 28.033 10.223 1 12.24 ? O3P FMN 1454 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#