data_1V6D # _model_server_result.job_id VNB4gBtMDXjI0EtJjVYnFw _model_server_result.datetime_utc '2024-11-27 13:07:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":390}' # _entry.id 1V6D # _exptl.entry_id 1V6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V6D _cell.length_a 46.93 _cell.length_b 53.719 _cell.length_c 77.473 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 B N PRO 1 B PRO 1 1_555 E C TBF . B TBF 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ASP 2 B ASP 2 1_555 B N AIB 3 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 ? covale ? covale3 B C AIB 3 B AIB 3 1_555 B N LEU 4 B LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 B C LEU 4 B LEU 4 1_555 B N AIB 5 B AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B C AIB 5 B AIB 5 1_555 B N LEU 6 B LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 B C ALA 7 B ALA 7 1_555 F N NME . B NME 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? metalc ? metalc1 C CA CA . A CA 1 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 C CA CA . A CA 1 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 C CA CA . A CA 1 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 C CA CA . A CA 1 1_555 A OE1 GLU 59 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 C CA CA . A CA 1 1_555 A OE1 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 C CA CA . A CA 1 1_555 G O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1V6D _atom_sites.fract_transf_matrix[1][1] 0.021308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1 1 CA CA . D 4 ACT A 1 390 390 ACT ACT . E 5 TBF B 1 9 9 TBF TBF . F 6 NME B 1 8 8 NME NME . G 7 HOH A 1 391 2 HOH HOH . G 7 HOH A 2 392 3 HOH HOH . G 7 HOH A 3 393 4 HOH HOH . G 7 HOH A 4 394 5 HOH HOH . G 7 HOH A 5 395 6 HOH HOH . G 7 HOH A 6 396 7 HOH HOH . G 7 HOH A 7 397 8 HOH HOH . G 7 HOH A 8 398 9 HOH HOH . G 7 HOH A 9 399 10 HOH HOH . G 7 HOH A 10 400 11 HOH HOH . G 7 HOH A 11 401 12 HOH HOH . G 7 HOH A 12 402 13 HOH HOH . G 7 HOH A 13 403 15 HOH HOH . G 7 HOH A 14 404 16 HOH HOH . G 7 HOH A 15 405 17 HOH HOH . G 7 HOH A 16 406 18 HOH HOH . G 7 HOH A 17 407 19 HOH HOH . G 7 HOH A 18 408 20 HOH HOH . G 7 HOH A 19 409 21 HOH HOH . G 7 HOH A 20 410 22 HOH HOH . G 7 HOH A 21 411 23 HOH HOH . G 7 HOH A 22 412 24 HOH HOH . G 7 HOH A 23 413 25 HOH HOH . G 7 HOH A 24 414 26 HOH HOH . G 7 HOH A 25 415 27 HOH HOH . G 7 HOH A 26 416 28 HOH HOH . G 7 HOH A 27 417 29 HOH HOH . G 7 HOH A 28 418 30 HOH HOH . G 7 HOH A 29 419 31 HOH HOH . G 7 HOH A 30 420 32 HOH HOH . G 7 HOH A 31 421 33 HOH HOH . G 7 HOH A 32 422 34 HOH HOH . G 7 HOH A 33 423 35 HOH HOH . G 7 HOH A 34 424 36 HOH HOH . G 7 HOH A 35 425 37 HOH HOH . G 7 HOH A 36 426 38 HOH HOH . G 7 HOH A 37 427 39 HOH HOH . G 7 HOH A 38 428 40 HOH HOH . G 7 HOH A 39 429 41 HOH HOH . G 7 HOH A 40 430 42 HOH HOH . G 7 HOH A 41 431 43 HOH HOH . G 7 HOH A 42 432 44 HOH HOH . G 7 HOH A 43 433 45 HOH HOH . G 7 HOH A 44 434 46 HOH HOH . G 7 HOH A 45 435 48 HOH HOH . G 7 HOH A 46 436 49 HOH HOH . G 7 HOH A 47 437 50 HOH HOH . G 7 HOH A 48 438 51 HOH HOH . G 7 HOH A 49 439 52 HOH HOH . G 7 HOH A 50 440 53 HOH HOH . G 7 HOH A 51 441 55 HOH HOH . G 7 HOH A 52 442 56 HOH HOH . G 7 HOH A 53 443 57 HOH HOH . G 7 HOH A 54 444 58 HOH HOH . G 7 HOH A 55 445 59 HOH HOH . G 7 HOH A 56 446 60 HOH HOH . G 7 HOH A 57 447 61 HOH HOH . G 7 HOH A 58 448 62 HOH HOH . G 7 HOH A 59 449 63 HOH HOH . G 7 HOH A 60 450 64 HOH HOH . G 7 HOH A 61 451 65 HOH HOH . G 7 HOH A 62 452 66 HOH HOH . G 7 HOH A 63 453 67 HOH HOH . G 7 HOH A 64 454 68 HOH HOH . G 7 HOH A 65 455 69 HOH HOH . G 7 HOH A 66 456 70 HOH HOH . G 7 HOH A 67 457 71 HOH HOH . G 7 HOH A 68 458 72 HOH HOH . G 7 HOH A 69 459 73 HOH HOH . G 7 HOH A 70 460 74 HOH HOH . G 7 HOH A 71 461 75 HOH HOH . G 7 HOH A 72 462 76 HOH HOH . G 7 HOH A 73 463 77 HOH HOH . G 7 HOH A 74 464 78 HOH HOH . G 7 HOH A 75 465 79 HOH HOH . G 7 HOH A 76 466 80 HOH HOH . G 7 HOH A 77 467 82 HOH HOH . G 7 HOH A 78 468 83 HOH HOH . G 7 HOH A 79 469 86 HOH HOH . G 7 HOH A 80 470 87 HOH HOH . G 7 HOH A 81 471 88 HOH HOH . G 7 HOH A 82 472 89 HOH HOH . G 7 HOH A 83 473 90 HOH HOH . G 7 HOH A 84 474 91 HOH HOH . G 7 HOH A 85 475 92 HOH HOH . G 7 HOH A 86 476 93 HOH HOH . G 7 HOH A 87 477 94 HOH HOH . G 7 HOH A 88 478 95 HOH HOH . G 7 HOH A 89 479 96 HOH HOH . G 7 HOH A 90 480 97 HOH HOH . G 7 HOH A 91 481 98 HOH HOH . G 7 HOH A 92 482 99 HOH HOH . G 7 HOH A 93 483 100 HOH HOH . G 7 HOH A 94 484 101 HOH HOH . G 7 HOH A 95 485 102 HOH HOH . G 7 HOH A 96 486 103 HOH HOH . G 7 HOH A 97 487 104 HOH HOH . G 7 HOH A 98 488 105 HOH HOH . G 7 HOH A 99 489 106 HOH HOH . G 7 HOH A 100 490 107 HOH HOH . G 7 HOH A 101 491 108 HOH HOH . G 7 HOH A 102 492 109 HOH HOH . G 7 HOH A 103 493 110 HOH HOH . G 7 HOH A 104 494 111 HOH HOH . G 7 HOH A 105 495 112 HOH HOH . G 7 HOH A 106 496 113 HOH HOH . G 7 HOH A 107 497 114 HOH HOH . G 7 HOH A 108 498 115 HOH HOH . G 7 HOH A 109 499 116 HOH HOH . G 7 HOH A 110 500 117 HOH HOH . G 7 HOH A 111 501 118 HOH HOH . G 7 HOH A 112 502 119 HOH HOH . G 7 HOH A 113 503 120 HOH HOH . G 7 HOH A 114 504 121 HOH HOH . G 7 HOH A 115 505 122 HOH HOH . G 7 HOH A 116 506 123 HOH HOH . G 7 HOH A 117 507 124 HOH HOH . G 7 HOH A 118 508 125 HOH HOH . G 7 HOH A 119 509 126 HOH HOH . G 7 HOH A 120 510 127 HOH HOH . G 7 HOH A 121 511 128 HOH HOH . G 7 HOH A 122 512 129 HOH HOH . G 7 HOH A 123 513 130 HOH HOH . G 7 HOH A 124 514 131 HOH HOH . G 7 HOH A 125 515 132 HOH HOH . G 7 HOH A 126 516 133 HOH HOH . G 7 HOH A 127 517 134 HOH HOH . G 7 HOH A 128 518 135 HOH HOH . G 7 HOH A 129 519 136 HOH HOH . G 7 HOH A 130 520 137 HOH HOH . G 7 HOH A 131 521 138 HOH HOH . G 7 HOH A 132 522 139 HOH HOH . G 7 HOH A 133 523 140 HOH HOH . G 7 HOH A 134 524 141 HOH HOH . G 7 HOH A 135 525 142 HOH HOH . G 7 HOH A 136 526 143 HOH HOH . G 7 HOH A 137 527 144 HOH HOH . G 7 HOH A 138 528 145 HOH HOH . G 7 HOH A 139 529 146 HOH HOH . G 7 HOH A 140 530 147 HOH HOH . G 7 HOH A 141 531 148 HOH HOH . G 7 HOH A 142 532 149 HOH HOH . G 7 HOH A 143 533 150 HOH HOH . G 7 HOH A 144 534 151 HOH HOH . G 7 HOH A 145 535 152 HOH HOH . G 7 HOH A 146 536 153 HOH HOH . G 7 HOH A 147 537 154 HOH HOH . G 7 HOH A 148 538 155 HOH HOH . G 7 HOH A 149 539 156 HOH HOH . G 7 HOH A 150 540 157 HOH HOH . G 7 HOH A 151 541 158 HOH HOH . G 7 HOH A 152 542 159 HOH HOH . G 7 HOH A 153 543 160 HOH HOH . G 7 HOH A 154 544 161 HOH HOH . G 7 HOH A 155 545 162 HOH HOH . G 7 HOH A 156 546 163 HOH HOH . G 7 HOH A 157 547 164 HOH HOH . G 7 HOH A 158 548 165 HOH HOH . G 7 HOH A 159 549 166 HOH HOH . G 7 HOH A 160 550 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 18.832 -10.336 55.919 1 28.71 ? C ACT 390 A 1 HETATM 2 O O ACT . . . D 4 18.931 -11.15 54.95 1 29.39 ? O ACT 390 A 1 HETATM 3 O OXT ACT . . . D 4 19.248 -10.625 57.058 1 26.82 ? OXT ACT 390 A 1 HETATM 4 C CH3 ACT . . . D 4 18.195 -9.018 55.755 1 26.93 ? CH3 ACT 390 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #