data_1V8K
#
_model_server_result.job_id            J3FLanOlZuz-OFlDQ84VAQ 
_model_server_result.datetime_utc      '2024-12-26 17:18:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    1V8K 
#
_exptl.entry_id    1V8K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1V8K 
_cell.length_a            61.068 
_cell.length_b            191.475 
_cell.length_c            74.627 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V8K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_365 -x-2,-y+1,z -1 0 0 0 -1 0 0 0 1 -122.136 191.475 0 
3 'crystal symmetry operation' 3_355 -x-2,y,-z -1 0 0 0 1 0 0 0 -1 -122.136 0 0 
4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 191.475 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 169 A THR 169 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc2 C O1B ANP . A ANP 500 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc3 C O2G ANP . A ANP 500 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 D O HOH . A HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 D O HOH . A HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 D O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     1V8K 
_atom_sites.fract_transf_matrix[1][1]    0.016375 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 3 ANP A 1 500 500 ANP ANP . 
D 4 HOH A 1 600 600 HOH HOH . 
D 4 HOH A 2 601 601 HOH HOH . 
D 4 HOH A 3 602 602 HOH HOH . 
D 4 HOH A 4 603 603 HOH HOH . 
D 4 HOH A 5 604 604 HOH HOH . 
D 4 HOH A 6 605 605 HOH HOH . 
D 4 HOH A 7 606 606 HOH HOH . 
D 4 HOH A 8 607 607 HOH HOH . 
D 4 HOH A 9 608 608 HOH HOH . 
D 4 HOH A 10 609 609 HOH HOH . 
D 4 HOH A 11 610 610 HOH HOH . 
D 4 HOH A 12 611 611 HOH HOH . 
D 4 HOH A 13 612 612 HOH HOH . 
D 4 HOH A 14 613 613 HOH HOH . 
D 4 HOH A 15 614 614 HOH HOH . 
D 4 HOH A 16 615 615 HOH HOH . 
D 4 HOH A 17 616 616 HOH HOH . 
D 4 HOH A 18 617 617 HOH HOH . 
D 4 HOH A 19 618 618 HOH HOH . 
D 4 HOH A 20 619 619 HOH HOH . 
D 4 HOH A 21 620 620 HOH HOH . 
D 4 HOH A 22 621 621 HOH HOH . 
D 4 HOH A 23 622 622 HOH HOH . 
D 4 HOH A 24 623 623 HOH HOH . 
D 4 HOH A 25 624 624 HOH HOH . 
D 4 HOH A 26 625 625 HOH HOH . 
D 4 HOH A 27 626 626 HOH HOH . 
D 4 HOH A 28 627 627 HOH HOH . 
D 4 HOH A 29 628 628 HOH HOH . 
D 4 HOH A 30 629 629 HOH HOH . 
D 4 HOH A 31 630 630 HOH HOH . 
D 4 HOH A 32 631 631 HOH HOH . 
D 4 HOH A 33 632 632 HOH HOH . 
D 4 HOH A 34 633 633 HOH HOH . 
D 4 HOH A 35 634 634 HOH HOH . 
D 4 HOH A 36 635 635 HOH HOH . 
D 4 HOH A 37 636 636 HOH HOH . 
D 4 HOH A 38 637 637 HOH HOH . 
D 4 HOH A 39 638 638 HOH HOH . 
D 4 HOH A 40 639 639 HOH HOH . 
D 4 HOH A 41 640 640 HOH HOH . 
D 4 HOH A 42 641 641 HOH HOH . 
D 4 HOH A 43 642 642 HOH HOH . 
D 4 HOH A 44 643 643 HOH HOH . 
D 4 HOH A 45 644 644 HOH HOH . 
D 4 HOH A 46 645 645 HOH HOH . 
D 4 HOH A 47 646 646 HOH HOH . 
D 4 HOH A 48 647 647 HOH HOH . 
D 4 HOH A 49 648 648 HOH HOH . 
D 4 HOH A 50 649 649 HOH HOH . 
D 4 HOH A 51 650 650 HOH HOH . 
D 4 HOH A 52 651 651 HOH HOH . 
D 4 HOH A 53 652 652 HOH HOH . 
D 4 HOH A 54 653 653 HOH HOH . 
D 4 HOH A 55 654 654 HOH HOH . 
D 4 HOH A 56 655 655 HOH HOH . 
D 4 HOH A 57 656 656 HOH HOH . 
D 4 HOH A 58 657 657 HOH HOH . 
D 4 HOH A 59 658 658 HOH HOH . 
D 4 HOH A 60 659 659 HOH HOH . 
D 4 HOH A 61 660 660 HOH HOH . 
D 4 HOH A 62 661 661 HOH HOH . 
D 4 HOH A 63 662 662 HOH HOH . 
D 4 HOH A 64 663 663 HOH HOH . 
D 4 HOH A 65 664 664 HOH HOH . 
D 4 HOH A 66 665 665 HOH HOH . 
D 4 HOH A 67 666 666 HOH HOH . 
D 4 HOH A 68 667 667 HOH HOH . 
D 4 HOH A 69 668 668 HOH HOH . 
D 4 HOH A 70 669 669 HOH HOH . 
D 4 HOH A 71 670 670 HOH HOH . 
D 4 HOH A 72 671 671 HOH HOH . 
D 4 HOH A 73 672 672 HOH HOH . 
D 4 HOH A 74 673 673 HOH HOH . 
D 4 HOH A 75 674 674 HOH HOH . 
D 4 HOH A 76 675 675 HOH HOH . 
D 4 HOH A 77 676 676 HOH HOH . 
D 4 HOH A 78 677 677 HOH HOH . 
D 4 HOH A 79 678 678 HOH HOH . 
D 4 HOH A 80 679 679 HOH HOH . 
D 4 HOH A 81 680 680 HOH HOH . 
D 4 HOH A 82 681 681 HOH HOH . 
D 4 HOH A 83 682 682 HOH HOH . 
D 4 HOH A 84 683 683 HOH HOH . 
D 4 HOH A 85 684 684 HOH HOH . 
D 4 HOH A 86 685 685 HOH HOH . 
D 4 HOH A 87 686 686 HOH HOH . 
D 4 HOH A 88 687 687 HOH HOH . 
D 4 HOH A 89 688 688 HOH HOH . 
D 4 HOH A 90 689 689 HOH HOH . 
D 4 HOH A 91 690 690 HOH HOH . 
D 4 HOH A 92 691 691 HOH HOH . 
D 4 HOH A 93 692 692 HOH HOH . 
D 4 HOH A 94 693 693 HOH HOH . 
D 4 HOH A 95 694 694 HOH HOH . 
D 4 HOH A 96 695 695 HOH HOH . 
D 4 HOH A 97 696 696 HOH HOH . 
D 4 HOH A 98 697 697 HOH HOH . 
D 4 HOH A 99 698 698 HOH HOH . 
D 4 HOH A 100 699 699 HOH HOH . 
D 4 HOH A 101 700 700 HOH HOH . 
D 4 HOH A 102 701 701 HOH HOH . 
D 4 HOH A 103 702 702 HOH HOH . 
D 4 HOH A 104 703 703 HOH HOH . 
D 4 HOH A 105 704 704 HOH HOH . 
D 4 HOH A 106 705 705 HOH HOH . 
D 4 HOH A 107 706 706 HOH HOH . 
D 4 HOH A 108 707 707 HOH HOH . 
D 4 HOH A 109 708 708 HOH HOH . 
D 4 HOH A 110 709 709 HOH HOH . 
D 4 HOH A 111 710 710 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 -39.683 78.419 -24.428 1 54.67 ? PG ANP 500 A 1 
HETATM 2 O O1G ANP . . . C 3 -38.9 79.123 -25.5 1 59.36 ? O1G ANP 500 A 1 
HETATM 3 O O2G ANP . . . C 3 -39.029 77.176 -23.867 1 48.14 ? O2G ANP 500 A 1 
HETATM 4 O O3G ANP . . . C 3 -41.173 78.063 -24.94 1 48.48 ? O3G ANP 500 A 1 
HETATM 5 P PB ANP . . . C 3 -40.826 79.268 -21.888 1 34.08 ? PB ANP 500 A 1 
HETATM 6 O O1B ANP . . . C 3 -40.356 78.148 -21.06 1 31.05 ? O1B ANP 500 A 1 
HETATM 7 O O2B ANP . . . C 3 -41.634 80.41 -21.474 1 43.12 ? O2B ANP 500 A 1 
HETATM 8 N N3B ANP . . . C 3 -39.915 79.478 -23.204 1 34.11 ? N3B ANP 500 A 1 
HETATM 9 P PA ANP . . . C 3 -38.955 79.683 -19.708 1 43.99 ? PA ANP 500 A 1 
HETATM 10 O O1A ANP . . . C 3 -37.507 79.38 -19.826 1 43.39 ? O1A ANP 500 A 1 
HETATM 11 O O2A ANP . . . C 3 -39.602 79.962 -18.412 1 35.36 ? O2A ANP 500 A 1 
HETATM 12 O O3A ANP . . . C 3 -39.724 80.133 -21.034 1 29.25 ? O3A ANP 500 A 1 
HETATM 13 O O5' ANP . . . C 3 -38.309 81.142 -19.403 1 29.87 ? O5' ANP 500 A 1 
HETATM 14 C C5' ANP . . . C 3 -38.467 82.38 -20.111 1 43.26 ? C5' ANP 500 A 1 
HETATM 15 C C4' ANP . . . C 3 -37.248 83.229 -19.594 1 38.21 ? C4' ANP 500 A 1 
HETATM 16 O O4' ANP . . . C 3 -37.7 84.338 -18.718 1 46.59 ? O4' ANP 500 A 1 
HETATM 17 C C3' ANP . . . C 3 -36.204 82.56 -18.673 1 42.67 ? C3' ANP 500 A 1 
HETATM 18 O O3' ANP . . . C 3 -34.928 83.155 -18.859 1 57.18 ? O3' ANP 500 A 1 
HETATM 19 C C2' ANP . . . C 3 -36.798 82.746 -17.272 1 49.05 ? C2' ANP 500 A 1 
HETATM 20 O O2' ANP . . . C 3 -35.772 82.67 -16.252 1 54.95 ? O2' ANP 500 A 1 
HETATM 21 C C1' ANP . . . C 3 -37.451 84.112 -17.346 1 40.77 ? C1' ANP 500 A 1 
HETATM 22 N N9 ANP . . . C 3 -38.738 84.182 -16.576 1 42.82 ? N9 ANP 500 A 1 
HETATM 23 C C8 ANP . . . C 3 -39.932 83.615 -16.889 1 34.29 ? C8 ANP 500 A 1 
HETATM 24 N N7 ANP . . . C 3 -40.874 83.877 -16.003 1 30.44 ? N7 ANP 500 A 1 
HETATM 25 C C5 ANP . . . C 3 -40.307 84.651 -15.052 1 36.5 ? C5 ANP 500 A 1 
HETATM 26 C C6 ANP . . . C 3 -40.855 85.23 -13.869 1 38.19 ? C6 ANP 500 A 1 
HETATM 27 N N6 ANP . . . C 3 -42.044 85.138 -13.445 1 36.09 ? N6 ANP 500 A 1 
HETATM 28 N N1 ANP . . . C 3 -39.917 85.965 -13.157 1 41.95 ? N1 ANP 500 A 1 
HETATM 29 C C2 ANP . . . C 3 -38.586 86.124 -13.549 1 41.36 ? C2 ANP 500 A 1 
HETATM 30 N N3 ANP . . . C 3 -38.086 85.588 -14.647 1 39.39 ? N3 ANP 500 A 1 
HETATM 31 C C4 ANP . . . C 3 -38.98 84.857 -15.376 1 34.41 ? C4 ANP 500 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#